Wall clock time and date at job start Tue Mar 31 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47777 * 2 1 4 4 C 1.52996 * 109.47571 * 239.99296 * 2 1 3 5 5 C 1.50707 * 109.46740 * 65.00444 * 4 2 1 6 6 H 1.08006 * 119.99613 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00054 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00223 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 120.00003 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47068 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46965 * 119.99424 * 9 7 5 12 12 H 1.48494 * 109.47140 * 239.99552 * 9 7 5 13 13 C 1.53011 * 109.46913 * 119.99867 * 2 1 3 14 14 N 1.46897 * 109.46706 * 295.00012 * 13 2 1 15 15 C 1.46848 * 110.99714 * 169.99900 * 14 13 2 16 16 C 1.53039 * 109.52430 * 185.83502 * 15 14 13 17 17 C 1.53119 * 109.28226 * 300.82292 * 16 15 14 18 18 O 1.42899 * 109.52340 * 177.55613 * 17 16 15 19 19 C 1.42903 * 113.99629 * 150.00173 * 18 17 16 20 20 C 1.53000 * 109.46726 * 180.02562 * 19 18 17 21 21 C 1.53003 * 117.49371 * 243.61887 * 20 19 18 22 22 C 1.53001 * 117.49608 * 174.99962 * 20 19 18 23 23 C 1.53123 * 109.15643 * 57.65115 * 17 16 15 24 24 C 1.46848 * 111.00050 * 294.20626 * 14 13 2 25 25 H 1.08997 * 109.47137 * 300.00405 * 1 2 3 26 26 H 1.09004 * 109.46453 * 59.99892 * 1 2 3 27 27 H 1.08998 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47876 * 185.00036 * 4 2 1 29 29 H 1.09004 * 109.47473 * 305.00999 * 4 2 1 30 30 H 0.96998 * 120.00224 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.46898 * 175.00186 * 13 2 1 32 32 H 1.08998 * 109.47067 * 54.99933 * 13 2 1 33 33 H 1.09005 * 109.45944 * 65.82318 * 15 14 13 34 34 H 1.08997 * 109.45632 * 305.84820 * 15 14 13 35 35 H 1.08997 * 109.50283 * 180.88243 * 16 15 14 36 36 H 1.09004 * 109.53389 * 60.78197 * 16 15 14 37 37 H 1.08999 * 109.52053 * 297.68808 * 17 16 15 38 38 H 1.09002 * 109.47382 * 59.99956 * 19 18 17 39 39 H 1.09001 * 109.46938 * 299.99942 * 19 18 17 40 40 H 1.08995 * 115.55630 * 29.32572 * 20 19 18 41 41 H 1.08998 * 117.50656 * 0.02562 * 21 20 19 42 42 H 1.09001 * 117.49674 * 145.02590 * 21 20 19 43 43 H 1.09003 * 117.49710 * 214.97494 * 22 20 19 44 44 H 1.08998 * 117.50185 * 359.97438 * 22 20 19 45 45 H 1.08998 * 109.50654 * 62.29436 * 23 17 16 46 46 H 1.09004 * 109.49850 * 182.40345 * 23 17 16 47 47 H 1.08995 * 109.46606 * 294.17938 * 24 14 13 48 48 H 1.09000 * 109.46048 * 54.15128 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.6415 0.0569 -2.4765 6 1 1.0801 0.9741 -2.3757 7 6 1.9926 -0.4024 -3.7282 8 7 2.6757 -1.5195 -3.8510 9 14 1.4979 0.5620 -5.2497 10 1 0.7406 1.7730 -4.8436 11 1 2.7158 0.9666 -5.9969 12 1 0.6437 -0.2874 -6.1181 13 6 2.0400 -0.7213 1.2494 14 7 1.6513 0.0375 2.4456 15 6 1.9122 -0.7354 3.6667 16 6 1.3638 0.0219 4.8783 17 6 2.0394 1.3932 4.9657 18 8 1.4901 2.1272 6.0618 19 6 2.4055 3.0445 6.6640 20 6 1.7141 3.7702 7.8199 21 6 1.5332 5.2845 7.6960 22 6 2.5652 4.7145 8.6712 23 6 1.7931 2.1587 3.6626 24 6 2.3292 1.3395 2.4863 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1264 -0.7996 -1.2055 29 1 1.6054 -1.7199 -1.2951 30 1 2.9231 -1.8424 -4.7316 31 1 3.1263 -0.7995 1.2057 32 1 1.6054 -1.7198 1.2953 33 1 2.9865 -0.8781 3.7836 34 1 1.4226 -1.7064 3.5933 35 1 1.5714 -0.5446 5.7860 36 1 0.2871 0.1530 4.7694 37 1 3.1111 1.2623 5.1154 38 1 2.7322 3.7722 5.9211 39 1 3.2699 2.4991 7.0429 40 1 0.9277 3.2088 8.3243 41 1 1.9065 5.7636 6.7909 42 1 0.6277 5.7194 8.1189 43 1 2.3385 4.7745 9.7358 44 1 3.6179 4.8184 8.4081 45 1 0.7234 2.3234 3.5339 46 1 2.3076 3.1189 3.7019 47 1 3.4015 1.1870 2.6087 48 1 2.1426 1.8753 1.5556 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602477553.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:19 Heat of formation + Delta-G solvation = -43.630260 kcal Electronic energy + Delta-G solvation = -22318.921965 eV Core-core repulsion = 19180.621810 eV Total energy + Delta-G solvation = -3138.300154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.56935 -38.19166 -36.78206 -34.94949 -32.54875 -31.12717 -30.80971 -27.48253 -26.75939 -25.52978 -23.50363 -23.11282 -22.72742 -21.87430 -21.04374 -19.75281 -18.77013 -17.19119 -16.49400 -16.11828 -15.45278 -15.24478 -14.93524 -14.60813 -14.48522 -14.21218 -13.74618 -13.58196 -13.23936 -12.91119 -12.45123 -12.28519 -12.11306 -11.92500 -11.73966 -11.46118 -11.37572 -11.14708 -11.10928 -10.95138 -10.85493 -10.81246 -10.68840 -10.46212 -10.39171 -10.25361 -10.17643 -9.64530 -9.41547 -9.10278 -8.91615 -8.31505 -7.99610 -5.96257 -3.97081 3.21462 3.32906 3.40521 3.44743 3.57713 4.13335 4.45274 4.49768 4.53834 4.66313 4.77057 4.79704 4.99405 5.03488 5.18883 5.22642 5.26836 5.33704 5.38533 5.39661 5.45150 5.52797 5.57381 5.65020 5.73062 5.74010 5.86206 5.87463 5.89193 6.01515 6.09351 6.15724 6.21642 6.30239 6.43680 6.58677 6.73935 7.04595 7.12233 7.18472 7.24111 7.42082 7.46370 7.71704 7.87745 8.04343 8.48645 9.09588 9.66274 11.15328 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030542 B = 0.002723 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.563180 B =10280.299086 C =10813.376748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.056 0.944 4 C 0.026 3.974 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.061 3.939 14 N -0.535 5.535 15 C 0.058 3.942 16 C -0.110 4.110 17 C 0.091 3.909 18 O -0.379 6.379 19 C 0.093 3.907 20 C -0.152 4.152 21 C -0.177 4.177 22 C -0.176 4.176 23 C -0.135 4.135 24 C 0.055 3.945 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.258 0.742 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.028 0.972 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 8.232 23.436 24.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.066 4.066 14 N -0.259 5.259 15 C -0.071 4.071 16 C -0.148 4.148 17 C 0.034 3.966 18 O -0.298 6.298 19 C 0.016 3.984 20 C -0.170 4.170 21 C -0.214 4.214 22 C -0.213 4.213 23 C -0.173 4.173 24 C -0.073 4.073 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.046 0.954 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.477 8.174 23.344 24.739 hybrid contribution 1.010 0.332 -1.001 1.460 sum 0.533 8.506 22.344 23.914 Atomic orbital electron populations 1.21577 0.95721 1.00509 1.00161 1.21233 0.96011 0.99007 0.93728 0.92615 1.19137 0.95864 0.95605 0.90521 1.21273 1.34364 1.08237 0.90954 0.92534 1.25026 0.95396 0.95111 0.99106 1.69976 1.39247 1.21272 1.23225 0.86581 0.78228 0.80151 0.83325 1.19752 1.21146 1.21093 1.22313 0.97555 0.97238 0.89493 1.61975 1.58390 1.03550 1.02003 1.22031 0.98261 0.97117 0.89651 1.21631 1.02038 0.93653 0.97473 1.22187 0.96646 0.91868 0.85933 1.87907 1.38917 1.55200 1.47794 1.22004 0.91480 0.91691 0.93205 1.22150 1.03033 0.92293 0.99549 1.23071 1.01057 0.95700 1.01588 1.22974 0.97175 1.03765 0.97415 1.22075 1.03231 0.98087 0.93915 1.22078 0.95180 0.91019 0.99009 0.93884 0.92837 0.94223 0.96998 0.96574 0.93190 0.95394 0.91212 0.95311 0.90257 0.91354 0.90138 0.92783 0.93258 0.93185 0.86887 0.88617 0.88612 0.88453 0.88713 0.90121 0.91931 0.95381 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.08 -1.66 2.26 -90.62 -0.20 -1.87 16 3 H 0.06 1.16 6.22 -51.93 -0.32 0.84 16 4 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -14.33 8.41 -34.44 -0.29 -14.62 16 6 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.06 1.06 4.35 -3.82 -0.02 1.05 16 14 N -0.53 -7.98 4.11 -234.66 -0.96 -8.94 16 15 C 0.06 0.72 5.46 -3.83 -0.02 0.70 16 16 C -0.11 -1.25 5.75 -26.65 -0.15 -1.41 16 17 C 0.09 1.04 2.68 -26.61 -0.07 0.97 16 18 O -0.38 -4.45 9.99 -35.23 -0.35 -4.80 16 19 C 0.09 0.87 6.03 37.16 0.22 1.09 16 20 C -0.15 -1.27 6.06 -90.62 -0.55 -1.82 16 21 C -0.18 -1.30 10.18 -26.73 -0.27 -1.57 16 22 C -0.18 -1.17 10.25 -26.73 -0.27 -1.44 16 23 C -0.13 -1.64 5.72 -26.65 -0.15 -1.79 16 24 C 0.06 0.77 5.30 -3.83 -0.02 0.75 16 25 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 26 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 31 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.07 1.21 7.99 -51.93 -0.41 0.79 16 33 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.96 8.01 -51.93 -0.42 0.54 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.58 7.79 -51.93 -0.40 0.18 16 38 H 0.05 0.44 7.70 -51.93 -0.40 0.04 16 39 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 40 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.10 0.69 8.03 -51.93 -0.42 0.27 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.06 0.69 7.96 -51.93 -0.41 0.28 16 47 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 1.33 6.12 -51.93 -0.32 1.02 16 LS Contribution 373.28 15.07 5.63 5.63 Total: -1.00 -29.90 373.28 -10.96 -40.86 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -9.29 Total: -3.15 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -1.69 Total: -20.02 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: -0.23 Total: -35.30 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.35 Total: -4.80 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.90 -10.96 -40.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602477553.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.770 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds