Wall clock time and date at job start Tue Mar 31 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47777 * 2 1 4 4 C 1.52996 * 109.47571 * 239.99296 * 2 1 3 5 5 C 1.50707 * 109.46740 * 65.00444 * 4 2 1 6 6 H 1.08006 * 119.99613 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00054 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00223 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 120.00003 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47068 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46965 * 119.99424 * 9 7 5 12 12 H 1.48494 * 109.47140 * 239.99552 * 9 7 5 13 13 C 1.53011 * 109.46913 * 119.99867 * 2 1 3 14 14 N 1.46897 * 109.46706 * 295.00012 * 13 2 1 15 15 C 1.46848 * 110.99714 * 169.99900 * 14 13 2 16 16 C 1.53039 * 109.52430 * 185.83502 * 15 14 13 17 17 C 1.53119 * 109.28226 * 300.82292 * 16 15 14 18 18 O 1.42899 * 109.52340 * 177.55613 * 17 16 15 19 19 C 1.42903 * 113.99629 * 150.00173 * 18 17 16 20 20 C 1.53000 * 109.46726 * 180.02562 * 19 18 17 21 21 C 1.53003 * 117.49371 * 243.61887 * 20 19 18 22 22 C 1.53001 * 117.49608 * 174.99962 * 20 19 18 23 23 C 1.53123 * 109.15643 * 57.65115 * 17 16 15 24 24 C 1.46848 * 111.00050 * 294.20626 * 14 13 2 25 25 H 1.08997 * 109.47137 * 300.00405 * 1 2 3 26 26 H 1.09004 * 109.46453 * 59.99892 * 1 2 3 27 27 H 1.08998 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47876 * 185.00036 * 4 2 1 29 29 H 1.09004 * 109.47473 * 305.00999 * 4 2 1 30 30 H 0.96998 * 120.00224 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.46898 * 175.00186 * 13 2 1 32 32 H 1.08998 * 109.47067 * 54.99933 * 13 2 1 33 33 H 1.09005 * 109.45944 * 65.82318 * 15 14 13 34 34 H 1.08997 * 109.45632 * 305.84820 * 15 14 13 35 35 H 1.08997 * 109.50283 * 180.88243 * 16 15 14 36 36 H 1.09004 * 109.53389 * 60.78197 * 16 15 14 37 37 H 1.08999 * 109.52053 * 297.68808 * 17 16 15 38 38 H 1.09002 * 109.47382 * 59.99956 * 19 18 17 39 39 H 1.09001 * 109.46938 * 299.99942 * 19 18 17 40 40 H 1.08995 * 115.55630 * 29.32572 * 20 19 18 41 41 H 1.08998 * 117.50656 * 0.02562 * 21 20 19 42 42 H 1.09001 * 117.49674 * 145.02590 * 21 20 19 43 43 H 1.09003 * 117.49710 * 214.97494 * 22 20 19 44 44 H 1.08998 * 117.50185 * 359.97438 * 22 20 19 45 45 H 1.08998 * 109.50654 * 62.29436 * 23 17 16 46 46 H 1.09004 * 109.49850 * 182.40345 * 23 17 16 47 47 H 1.08995 * 109.46606 * 294.17938 * 24 14 13 48 48 H 1.09000 * 109.46048 * 54.15128 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.6415 0.0569 -2.4765 6 1 1.0801 0.9741 -2.3757 7 6 1.9926 -0.4024 -3.7282 8 7 2.6757 -1.5195 -3.8510 9 14 1.4979 0.5620 -5.2497 10 1 0.7406 1.7730 -4.8436 11 1 2.7158 0.9666 -5.9969 12 1 0.6437 -0.2874 -6.1181 13 6 2.0400 -0.7213 1.2494 14 7 1.6513 0.0375 2.4456 15 6 1.9122 -0.7354 3.6667 16 6 1.3638 0.0219 4.8783 17 6 2.0394 1.3932 4.9657 18 8 1.4901 2.1272 6.0618 19 6 2.4055 3.0445 6.6640 20 6 1.7141 3.7702 7.8199 21 6 1.5332 5.2845 7.6960 22 6 2.5652 4.7145 8.6712 23 6 1.7931 2.1587 3.6626 24 6 2.3292 1.3395 2.4863 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1264 -0.7996 -1.2055 29 1 1.6054 -1.7199 -1.2951 30 1 2.9231 -1.8424 -4.7316 31 1 3.1263 -0.7995 1.2057 32 1 1.6054 -1.7198 1.2953 33 1 2.9865 -0.8781 3.7836 34 1 1.4226 -1.7064 3.5933 35 1 1.5714 -0.5446 5.7860 36 1 0.2871 0.1530 4.7694 37 1 3.1111 1.2623 5.1154 38 1 2.7322 3.7722 5.9211 39 1 3.2699 2.4991 7.0429 40 1 0.9277 3.2088 8.3243 41 1 1.9065 5.7636 6.7909 42 1 0.6277 5.7194 8.1189 43 1 2.3385 4.7745 9.7358 44 1 3.6179 4.8184 8.4081 45 1 0.7234 2.3234 3.5339 46 1 2.3076 3.1189 3.7019 47 1 3.4015 1.1870 2.6087 48 1 2.1426 1.8753 1.5556 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602477553.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:19 Heat of formation + Delta-G solvation = -59.373218 kcal Electronic energy + Delta-G solvation = -22319.604630 eV Core-core repulsion = 19180.621810 eV Total energy + Delta-G solvation = -3138.982820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57276 -39.08504 -37.68707 -36.46019 -34.43250 -32.48037 -31.85611 -28.92085 -28.12841 -26.91020 -25.10580 -24.21236 -23.33840 -23.18571 -21.72476 -20.73701 -20.41711 -18.53330 -17.97565 -17.18704 -16.60417 -16.30375 -16.06832 -16.01278 -15.71697 -15.27198 -15.06029 -14.57901 -14.39265 -14.24767 -14.05033 -13.62487 -13.32122 -13.22266 -12.99151 -12.76957 -12.58157 -12.44030 -12.37608 -12.26114 -12.15762 -12.09661 -11.94699 -11.83832 -11.52528 -11.38570 -11.25614 -11.09661 -10.98738 -10.83723 -10.53183 -10.30121 -9.21236 -8.17151 -6.25843 1.39573 1.40295 1.53201 2.42008 2.49974 2.93057 2.98103 3.16277 3.75893 3.80506 3.88647 3.96925 4.05198 4.09181 4.17511 4.25636 4.31881 4.34488 4.41782 4.49912 4.54028 4.54941 4.61606 4.68506 4.76107 4.77767 4.86269 4.88004 4.94321 4.99259 5.01356 5.02985 5.10199 5.20125 5.23523 5.25552 5.29818 5.33858 5.48596 5.51615 5.57251 5.81938 5.90079 6.12369 6.24416 6.31716 6.33307 6.90204 7.42268 8.95058 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030542 B = 0.002723 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.563180 B =10280.299086 C =10813.376748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.072 4.072 3 H 0.053 0.947 4 C 0.032 3.968 5 C -0.525 4.525 6 H 0.059 0.941 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.073 3.927 14 N -0.539 5.539 15 C 0.058 3.942 16 C -0.104 4.104 17 C 0.093 3.907 18 O -0.393 6.393 19 C 0.089 3.911 20 C -0.168 4.168 21 C -0.182 4.182 22 C -0.163 4.163 23 C -0.127 4.127 24 C 0.055 3.945 25 H 0.063 0.937 26 H 0.036 0.964 27 H 0.036 0.964 28 H -0.015 1.015 29 H -0.009 1.009 30 H 0.262 0.738 31 H 0.021 0.979 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.032 0.968 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.021 9.460 24.688 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 H 0.072 0.928 4 C -0.005 4.005 5 C -0.564 4.564 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.055 4.055 14 N -0.264 5.264 15 C -0.070 4.070 16 C -0.142 4.142 17 C 0.036 3.964 18 O -0.313 6.313 19 C 0.013 3.987 20 C -0.186 4.186 21 C -0.218 4.218 22 C -0.200 4.200 23 C -0.165 4.165 24 C -0.073 4.073 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.004 0.996 29 H 0.009 0.991 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.127 0.873 44 H 0.121 0.879 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.050 0.950 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.641 9.415 24.619 26.366 hybrid contribution 1.078 -0.049 -1.339 1.720 sum 0.437 9.366 23.280 25.097 Atomic orbital electron populations 1.21461 0.94784 1.00388 1.00268 1.21035 0.96619 0.98440 0.92979 0.92834 1.19020 0.94049 0.94737 0.92709 1.21651 1.34176 1.08471 0.92063 0.92248 1.25946 0.95346 0.96127 1.02624 1.70104 1.40402 1.22929 1.24180 0.85468 0.78064 0.78898 0.79059 1.18659 1.20520 1.20541 1.22026 0.96907 0.97085 0.89450 1.61926 1.58612 1.03893 1.01957 1.22099 0.98891 0.97235 0.88792 1.21570 1.01242 0.93864 0.97483 1.22140 0.97173 0.91620 0.85486 1.87894 1.39940 1.55682 1.47757 1.22146 0.91535 0.91533 0.93481 1.22145 1.03787 0.92730 0.99983 1.23149 1.01740 0.94910 1.02043 1.23067 0.97341 1.01794 0.97813 1.21991 1.02389 0.98464 0.93654 1.22071 0.95463 0.90590 0.99129 0.91834 0.94492 0.94433 0.99616 0.99068 0.92970 0.96105 0.91154 0.94618 0.89697 0.89635 0.91175 0.91766 0.92997 0.92304 0.87615 0.88589 0.88099 0.87327 0.87915 0.91359 0.90731 0.94996 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.36 8.89 71.98 0.64 -3.72 16 2 C -0.07 -2.98 2.26 -10.79 -0.02 -3.00 16 3 H 0.05 2.24 6.22 -2.39 -0.01 2.23 16 4 C 0.03 1.72 4.45 29.85 0.13 1.85 16 5 C -0.53 -29.96 8.41 25.60 0.22 -29.75 16 6 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 8 N -0.94 -57.47 13.29 21.45 0.28 -57.19 16 9 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 10 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 C 0.07 2.53 4.35 86.31 0.38 2.91 16 14 N -0.54 -15.52 4.11 -896.34 -3.68 -19.21 16 15 C 0.06 1.34 5.46 86.33 0.47 1.81 16 16 C -0.10 -2.16 5.75 30.65 0.18 -1.98 16 17 C 0.09 1.95 2.68 30.68 0.08 2.03 16 18 O -0.39 -8.58 9.99 -148.98 -1.49 -10.07 16 19 C 0.09 1.52 6.03 71.98 0.43 1.95 16 20 C -0.17 -2.57 6.06 -10.79 -0.07 -2.64 16 21 C -0.18 -2.38 10.18 30.60 0.31 -2.07 16 22 C -0.16 -1.82 10.25 30.60 0.31 -1.51 16 23 C -0.13 -2.91 5.72 30.65 0.18 -2.73 16 24 C 0.06 1.49 5.30 86.33 0.46 1.95 16 25 H 0.06 2.20 7.75 -2.39 -0.02 2.19 16 26 H 0.04 1.53 6.95 -2.39 -0.02 1.52 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H -0.01 -0.84 8.14 -2.39 -0.02 -0.85 16 29 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.02 0.75 8.12 -2.39 -0.02 0.73 16 32 H 0.07 2.42 7.99 -2.39 -0.02 2.40 16 33 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.08 1.90 8.01 -2.39 -0.02 1.88 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.06 1.22 7.79 -2.39 -0.02 1.20 16 38 H 0.05 0.84 7.70 -2.39 -0.02 0.82 16 39 H 0.06 0.88 8.09 -2.39 -0.02 0.86 16 40 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.10 1.24 8.03 -2.39 -0.02 1.22 16 42 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.07 1.52 7.96 -2.39 -0.02 1.50 16 47 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.07 2.15 6.12 -2.39 -0.01 2.14 16 Total: -1.00 -63.95 373.28 2.17 -61.78 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.88 Total: 12.41 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 4.16 Total: -34.62 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -3.40 Total: -76.40 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -1.49 Total: -10.07 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -63.95 2.17 -61.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602477553.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.407 kcal (2) G-P(sol) polarization free energy of solvation -63.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds