Wall clock time and date at job start Tue Mar 31 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47100 * 2 1 4 4 C 1.52999 * 109.47248 * 119.99420 * 2 1 3 5 5 C 1.50704 * 109.47312 * 295.00565 * 4 2 1 6 6 H 1.08000 * 119.99619 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00235 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99874 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00059 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46902 * 89.99985 * 9 7 5 11 11 H 1.48505 * 109.47374 * 209.99701 * 9 7 5 12 12 H 1.48497 * 109.47376 * 330.00204 * 9 7 5 13 13 C 1.52998 * 109.47602 * 239.99712 * 2 1 3 14 14 N 1.46899 * 109.47139 * 64.99673 * 13 2 1 15 15 C 1.46841 * 111.00281 * 190.00435 * 14 13 2 16 16 C 1.53042 * 109.52629 * 174.16212 * 15 14 13 17 17 C 1.53117 * 109.27613 * 59.17734 * 16 15 14 18 18 O 1.42903 * 109.52232 * 182.37726 * 17 16 15 19 19 C 1.42890 * 114.00352 * 209.87432 * 18 17 16 20 20 C 1.53002 * 109.47227 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.49634 * 243.61970 * 20 19 18 22 22 C 1.53003 * 60.00274 * 252.51094 * 21 20 19 23 23 C 1.53120 * 109.16267 * 302.34396 * 17 16 15 24 24 C 1.46850 * 110.99956 * 65.79123 * 14 13 2 25 25 H 1.09003 * 109.47374 * 300.00226 * 1 2 3 26 26 H 1.08998 * 109.47245 * 60.00652 * 1 2 3 27 27 H 1.08996 * 109.47149 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47298 * 55.00281 * 4 2 1 29 29 H 1.08999 * 109.47381 * 175.00507 * 4 2 1 30 30 H 0.96997 * 119.99754 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46794 * 305.00482 * 13 2 1 32 32 H 1.08997 * 109.47256 * 184.99901 * 13 2 1 33 33 H 1.08998 * 109.46320 * 54.14149 * 15 14 13 34 34 H 1.08998 * 109.45620 * 294.17285 * 15 14 13 35 35 H 1.09003 * 109.49792 * 299.23877 * 16 15 14 36 36 H 1.08994 * 109.50340 * 179.12119 * 16 15 14 37 37 H 1.09002 * 109.52261 * 62.25263 * 17 16 15 38 38 H 1.09004 * 109.47024 * 300.00477 * 19 18 17 39 39 H 1.09000 * 109.47250 * 59.99900 * 19 18 17 40 40 H 1.08999 * 115.54723 * 29.33229 * 20 19 18 41 41 H 1.08989 * 117.50067 * 0.02562 * 21 20 19 42 42 H 1.09003 * 117.49305 * 145.02290 * 21 20 19 43 43 H 1.08999 * 117.50253 * 252.51281 * 22 21 20 44 44 H 1.08999 * 117.49648 * 107.48794 * 22 21 20 45 45 H 1.09002 * 109.50326 * 177.59202 * 23 17 16 46 46 H 1.08999 * 109.50267 * 297.71858 * 23 17 16 47 47 H 1.09002 * 109.46123 * 305.85896 * 24 14 13 48 48 H 1.08998 * 109.45942 * 65.83350 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0804 0.9747 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6764 -1.5184 3.8513 9 14 1.4994 0.5638 5.2495 10 1 0.1723 0.0955 5.7237 11 1 2.5091 0.3541 6.3182 12 1 1.4243 2.0089 4.9162 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 1.9124 -0.7356 -3.6666 16 6 1.3639 0.0215 -4.8782 17 6 2.0395 1.3927 -4.9657 18 8 1.4913 2.1261 -6.0629 19 6 2.4063 3.0451 -6.6628 20 6 1.7160 3.7699 -7.8201 21 6 2.2740 3.5461 -9.2270 22 6 2.4952 4.8850 -8.5204 23 6 1.7931 2.1584 -3.6627 24 6 2.3292 1.3394 -2.4864 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -1.7197 1.2953 29 1 3.1263 -0.7993 1.2057 30 1 2.9236 -1.8412 4.7319 31 1 1.6054 -1.7198 -1.2950 32 1 3.1263 -0.7994 -1.2054 33 1 1.4231 -1.7068 -3.5932 34 1 2.9867 -0.8782 -3.7833 35 1 0.2873 0.1524 -4.7686 36 1 1.5716 -0.5451 -5.7859 37 1 3.1114 1.2619 -5.1142 38 1 2.7301 3.7732 -5.9190 39 1 3.2725 2.5015 -7.0400 40 1 0.6380 3.8955 -7.7198 41 1 3.1325 2.8822 -9.3282 42 1 1.5629 3.5243 -10.0528 43 1 1.9296 5.7441 -8.8813 44 1 3.4995 5.1023 -8.1567 45 1 2.3076 3.1186 -3.7020 46 1 0.7233 2.3230 -3.5341 47 1 2.1425 1.8752 -1.5557 48 1 3.4015 1.1869 -2.6088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602477554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:22 Heat of formation + Delta-G solvation = -43.594784 kcal Electronic energy + Delta-G solvation = -22292.037759 eV Core-core repulsion = 19153.739143 eV Total energy + Delta-G solvation = -3138.298616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.56951 -38.19725 -36.78724 -34.94961 -32.54751 -31.12510 -30.81083 -27.48559 -26.75875 -25.53121 -23.50561 -23.08947 -22.74790 -21.87807 -21.07373 -19.73355 -18.76921 -17.15447 -16.48602 -16.11301 -15.71077 -15.10983 -14.77425 -14.65423 -14.48735 -14.24928 -13.78856 -13.55681 -13.24343 -12.92338 -12.44989 -12.27213 -12.10693 -11.93797 -11.67541 -11.56767 -11.37023 -11.15421 -11.07528 -10.93986 -10.83544 -10.79857 -10.70068 -10.51205 -10.38267 -10.25471 -10.19796 -9.63794 -9.40771 -9.10002 -8.92637 -8.30991 -7.99587 -5.96000 -3.96872 3.21657 3.34137 3.40335 3.43644 3.56302 4.13297 4.44581 4.49882 4.53011 4.65798 4.76888 4.79618 4.98108 5.03609 5.18227 5.23219 5.26154 5.33848 5.38396 5.39816 5.45912 5.50844 5.57482 5.65155 5.72384 5.73300 5.85740 5.87688 5.89067 6.01481 6.09497 6.15692 6.21691 6.30237 6.43671 6.58700 6.73914 7.04592 7.12186 7.18435 7.24107 7.42126 7.46384 7.71643 7.87829 8.04519 8.48768 9.09539 9.66363 11.15550 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034863 B = 0.002650 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.946415 B =10565.002790 C =10992.849019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.061 3.939 14 N -0.535 5.535 15 C 0.058 3.942 16 C -0.110 4.110 17 C 0.091 3.909 18 O -0.379 6.379 19 C 0.093 3.907 20 C -0.152 4.152 21 C -0.179 4.179 22 C -0.176 4.176 23 C -0.135 4.135 24 C 0.055 3.945 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.079 0.921 34 H 0.029 0.971 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 7.850 -23.746 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.066 4.066 14 N -0.259 5.259 15 C -0.071 4.071 16 C -0.148 4.148 17 C 0.034 3.966 18 O -0.298 6.298 19 C 0.016 3.984 20 C -0.170 4.170 21 C -0.215 4.215 22 C -0.213 4.213 23 C -0.174 4.174 24 C -0.073 4.073 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.132 0.868 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.081 0.919 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.303 7.789 -23.654 24.905 hybrid contribution 1.000 0.332 0.990 1.446 sum 0.698 8.121 -22.664 24.085 Atomic orbital electron populations 1.21576 0.95724 1.00513 1.00154 1.21231 0.96009 0.99014 0.93733 0.92611 1.19131 0.95858 0.95595 0.90501 1.21233 1.34447 1.08256 0.90970 0.92591 1.25025 0.95369 0.95137 0.99099 1.69968 1.39138 1.21293 1.23316 0.86632 0.78215 0.80424 0.82952 1.20715 1.21353 1.19937 1.22309 0.97556 0.97239 0.89488 1.61972 1.58400 1.03553 1.02002 1.22029 0.98254 0.97120 0.89654 1.21628 1.02034 0.93654 0.97463 1.22185 0.96650 0.91889 0.85896 1.87905 1.38984 1.55212 1.47713 1.22001 0.91371 0.91482 0.93518 1.22156 1.00354 1.01824 0.92641 1.23066 1.03362 0.99603 0.95514 1.22977 1.01622 0.92664 1.04006 1.22081 1.03233 0.98125 0.93912 1.22079 0.95183 0.91013 0.99010 0.92847 0.93878 0.94224 0.96586 0.97002 0.93138 0.91215 0.95393 0.90258 0.95326 0.90138 0.91354 0.92814 0.92965 0.93475 0.86811 0.88741 0.88639 0.88403 0.88689 0.91869 0.90125 0.89423 0.95380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.15 0.33 -2.07 16 2 C -0.08 -1.66 2.26 -90.62 -0.20 -1.87 16 3 H 0.06 1.16 6.22 -51.93 -0.32 0.84 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.35 8.41 -34.44 -0.29 -14.64 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.06 1.06 4.35 -3.83 -0.02 1.05 16 14 N -0.53 -7.98 4.11 -234.67 -0.96 -8.94 16 15 C 0.06 0.72 5.46 -3.83 -0.02 0.70 16 16 C -0.11 -1.25 5.75 -26.65 -0.15 -1.41 16 17 C 0.09 1.04 2.67 -26.61 -0.07 0.97 16 18 O -0.38 -4.45 10.00 -35.23 -0.35 -4.80 16 19 C 0.09 0.87 6.03 37.16 0.22 1.10 16 20 C -0.15 -1.27 6.06 -90.61 -0.55 -1.82 16 21 C -0.18 -1.25 10.18 -26.73 -0.27 -1.52 16 22 C -0.18 -1.17 10.25 -26.73 -0.27 -1.44 16 23 C -0.14 -1.64 5.72 -26.65 -0.15 -1.79 16 24 C 0.06 0.77 5.30 -3.83 -0.02 0.75 16 25 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 26 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.07 1.21 7.99 -51.93 -0.41 0.79 16 32 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 33 H 0.08 0.96 8.01 -51.93 -0.42 0.54 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.58 7.79 -51.93 -0.40 0.18 16 38 H 0.05 0.47 7.95 -51.93 -0.41 0.06 16 39 H 0.05 0.41 7.82 -51.93 -0.41 0.00 16 40 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.09 0.62 8.03 -51.94 -0.42 0.21 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.69 7.95 -51.93 -0.41 0.28 16 46 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.09 1.33 6.12 -51.93 -0.32 1.02 16 48 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -29.87 373.26 -10.96 -40.83 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -9.29 Total: -3.17 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -1.69 Total: -19.98 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: -0.23 Total: -35.30 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.35 Total: -4.80 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.87 -10.96 -40.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602477554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.770 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds