Wall clock time and date at job start Tue Mar 31 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47607 * 2 1 4 4 C 1.53005 * 109.47100 * 120.00289 * 2 1 3 5 5 C 1.50697 * 109.46953 * 294.99971 * 4 2 1 6 6 H 1.07999 * 120.00208 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00115 * 180.02562 * 5 4 2 8 8 N 1.31526 * 119.99594 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00303 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46922 * 59.99998 * 9 7 5 11 11 H 1.48504 * 109.47200 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46919 * 299.99876 * 9 7 5 13 13 C 1.53001 * 109.46963 * 239.99928 * 2 1 3 14 14 N 1.46901 * 109.46991 * 62.09081 * 13 2 1 15 15 C 1.47844 * 111.00087 * 176.44308 * 14 13 2 16 16 C 1.54911 * 104.89207 * 213.57807 * 15 14 13 17 17 C 1.55429 * 101.52153 * 37.06034 * 16 15 14 18 18 H 1.09002 * 110.84011 * 82.82754 * 17 16 15 19 19 C 1.52992 * 110.69348 * 205.97611 * 17 16 15 20 20 C 1.53178 * 109.54528 * 293.45037 * 19 17 16 21 21 C 1.53106 * 109.15805 * 183.24313 * 20 19 17 22 22 O 1.42897 * 109.49100 * 57.47420 * 21 20 19 23 23 C 1.42905 * 114.09718 * 298.88849 * 22 21 20 24 24 C 1.53102 * 109.41398 * 61.15502 * 23 22 21 25 25 C 1.47439 * 111.00223 * 55.59331 * 14 13 2 26 26 H 1.08994 * 109.47036 * 186.48346 * 1 2 3 27 27 H 1.09000 * 109.46945 * 306.47884 * 1 2 3 28 28 H 1.08997 * 109.46999 * 66.47611 * 1 2 3 29 29 H 1.08998 * 109.47101 * 54.99916 * 4 2 1 30 30 H 1.08999 * 109.47129 * 174.99480 * 4 2 1 31 31 H 0.96994 * 119.99706 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47641 * 302.08969 * 13 2 1 33 33 H 1.09005 * 109.47198 * 182.08315 * 13 2 1 34 34 H 1.08995 * 110.37347 * 332.45866 * 15 14 13 35 35 H 1.08995 * 110.37403 * 94.68960 * 15 14 13 36 36 H 1.08996 * 110.99119 * 155.21831 * 16 15 14 37 37 H 1.08999 * 110.98661 * 279.03023 * 16 15 14 38 38 H 1.09003 * 109.54885 * 53.62360 * 19 17 16 39 39 H 1.09006 * 109.52037 * 303.05725 * 20 19 17 40 40 H 1.08996 * 109.52383 * 63.24208 * 20 19 17 41 41 H 1.08999 * 109.40554 * 297.48832 * 21 20 19 42 42 H 1.09003 * 109.48733 * 177.50875 * 21 20 19 43 43 H 1.09004 * 109.48165 * 301.17823 * 23 22 21 44 44 H 1.09000 * 109.49465 * 181.14241 * 23 22 21 45 45 H 1.09001 * 109.52069 * 182.48533 * 24 23 22 46 46 H 1.08996 * 109.51776 * 62.30385 * 24 23 22 47 47 H 1.09001 * 109.89126 * 242.66625 * 25 14 13 48 48 H 1.08996 * 109.89049 * 3.85546 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0569 2.4766 6 1 1.0807 0.9745 2.3757 7 6 1.9932 -0.4018 3.7283 8 7 2.6765 -1.5190 3.8511 9 14 1.4997 0.5632 5.2496 10 1 0.0197 0.6698 5.3096 11 1 1.9957 -0.1363 6.4620 12 1 2.0919 1.9235 5.1865 13 6 2.0400 -0.7213 -1.2492 14 7 1.5920 -0.0002 -2.4481 15 6 2.1373 -0.6207 -3.6743 16 6 2.3649 0.5603 -4.6507 17 6 2.8458 1.6761 -3.6815 18 1 3.9119 1.5785 -3.4762 19 6 2.5313 3.0604 -4.2521 20 6 3.3690 3.2976 -5.5124 21 6 3.1081 4.7148 -6.0297 22 8 3.4173 5.6611 -5.0046 23 6 2.6301 5.5168 -3.8207 24 6 2.8735 4.1327 -3.2132 25 6 2.0182 1.4106 -2.4063 26 1 -0.3633 -1.0210 0.1160 27 1 -0.3633 0.6110 0.8263 28 1 -0.3633 0.4102 -0.9422 29 1 1.6054 -1.7199 1.2951 30 1 3.1263 -0.7996 1.2055 31 1 2.9243 -1.8415 4.7316 32 1 1.6464 -1.7375 -1.2682 33 1 3.1294 -0.7538 -1.2308 34 1 3.0808 -1.1219 -3.4586 35 1 1.4204 -1.3268 -4.0933 36 1 3.1346 0.3182 -5.3835 37 1 1.4349 0.8446 -5.1430 38 1 1.4720 3.1198 -4.5020 39 1 4.4267 3.1877 -5.2727 40 1 3.0906 2.5722 -6.2767 41 1 2.0588 4.8110 -6.3088 42 1 3.7348 4.9049 -6.9011 43 1 1.5745 5.6235 -4.0708 44 1 2.9124 6.2847 -3.1004 45 1 2.2410 4.0041 -2.3349 46 1 3.9208 4.0403 -2.9256 47 1 1.1441 2.0617 -2.3894 48 1 2.6316 1.5867 -1.5228 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602480806.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:30 Heat of formation + Delta-G solvation = -74.675640 kcal Electronic energy + Delta-G solvation = -23035.794687 eV Core-core repulsion = 19896.148304 eV Total energy + Delta-G solvation = -3139.646383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08202 -38.64286 -35.71718 -34.05524 -32.25991 -31.38150 -30.10876 -28.72325 -26.76519 -25.72517 -24.33895 -23.77918 -22.61835 -20.91496 -20.67543 -20.08522 -18.47777 -16.65430 -16.47669 -16.18269 -15.78555 -15.21289 -14.93658 -14.45874 -14.29280 -14.06210 -13.96891 -13.32058 -13.21546 -12.70129 -12.63778 -12.46849 -12.18503 -11.79055 -11.62069 -11.51522 -11.44053 -11.34449 -11.13927 -11.03110 -10.84204 -10.71493 -10.63163 -10.37525 -10.36204 -10.28021 -10.15586 -9.65821 -9.58941 -9.10698 -8.93584 -8.31405 -7.96233 -5.96505 -3.97719 3.34852 3.39218 3.41641 3.67658 4.26172 4.35875 4.44026 4.49040 4.61441 4.78222 4.86418 4.93363 5.07320 5.13638 5.19079 5.30217 5.39150 5.43570 5.47007 5.53571 5.55818 5.66938 5.67988 5.72792 5.76501 5.84058 5.86192 5.89142 5.96980 6.07093 6.13169 6.17735 6.22323 6.35190 6.45539 6.57329 6.70125 6.98537 7.04846 7.14407 7.21710 7.35131 7.48679 7.70248 7.86484 8.03710 8.47784 9.08467 9.65559 11.15054 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019932 B = 0.003625 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.463874 B = 7722.876803 C = 8712.514554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.085 4.085 3 H 0.056 0.944 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.055 3.945 14 N -0.526 5.526 15 C 0.040 3.960 16 C -0.121 4.121 17 C -0.104 4.104 18 H 0.073 0.927 19 C -0.075 4.075 20 C -0.150 4.150 21 C 0.061 3.939 22 O -0.386 6.386 23 C 0.061 3.939 24 C -0.154 4.154 25 C 0.047 3.953 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.016 0.984 30 H 0.011 0.989 31 H 0.260 0.740 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 8.992 -20.499 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.103 4.103 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.072 4.072 14 N -0.250 5.250 15 C -0.088 4.088 16 C -0.159 4.159 17 C -0.123 4.123 18 H 0.092 0.908 19 C -0.094 4.094 20 C -0.188 4.188 21 C -0.016 4.016 22 O -0.305 6.305 23 C -0.016 4.016 24 C -0.192 4.192 25 C -0.081 4.081 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.220 8.968 -20.374 22.262 hybrid contribution 0.518 0.110 1.093 1.214 sum 0.298 9.078 -19.282 21.314 Atomic orbital electron populations 1.21573 0.95714 1.00850 0.99793 1.21313 0.96056 0.98964 0.93996 0.92574 1.19120 0.95835 0.95555 0.90446 1.21193 1.34628 1.08256 0.91002 0.92683 1.25022 0.95340 0.95099 0.99075 1.69961 1.39054 1.21235 1.23468 0.86694 0.78914 0.80098 0.82510 1.20250 1.21368 1.20325 1.22462 0.96873 0.98074 0.89798 1.63647 1.57438 1.01779 1.02104 1.23023 0.98246 0.96729 0.90812 1.22786 1.01046 0.94931 0.97182 1.22508 1.00011 0.93938 0.95889 0.90831 1.21152 0.99748 0.93923 0.94568 1.22252 1.01162 0.97295 0.98068 1.22564 1.00180 0.88348 0.90530 1.87921 1.62111 1.54925 1.25523 1.22604 0.94829 0.97249 0.86928 1.22289 1.03141 0.94710 0.99042 1.22912 0.98165 0.90519 0.96518 0.94018 0.93149 0.93791 0.96582 0.97045 0.93052 0.91285 0.95482 0.93941 0.90701 0.91385 0.90873 0.90858 0.91140 0.90849 0.93368 0.89164 0.93253 0.88886 0.90201 0.90982 0.90868 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.84 37.16 0.33 -2.08 16 2 C -0.08 -1.75 2.07 -90.62 -0.19 -1.93 16 3 H 0.06 1.17 6.18 -51.93 -0.32 0.85 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.45 8.49 -34.44 -0.29 -14.74 16 6 H 0.05 1.51 7.07 -52.49 -0.37 1.14 16 7 C 0.06 1.60 5.46 -17.81 -0.10 1.50 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.06 0.99 4.22 -3.82 -0.02 0.97 16 14 N -0.53 -7.90 4.49 -231.25 -1.04 -8.94 16 15 C 0.04 0.50 6.72 -2.30 -0.02 0.48 16 16 C -0.12 -1.23 5.77 -24.43 -0.14 -1.37 16 17 C -0.10 -1.13 2.50 -88.64 -0.22 -1.35 16 18 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 19 C -0.08 -0.71 1.65 -90.44 -0.15 -0.86 16 20 C -0.15 -1.25 5.23 -26.58 -0.14 -1.39 16 21 C 0.06 0.51 6.84 37.21 0.25 0.76 16 22 O -0.39 -4.15 10.77 -35.23 -0.38 -4.53 16 23 C 0.06 0.56 6.84 37.21 0.25 0.82 16 24 C -0.15 -1.52 5.13 -26.59 -0.14 -1.65 16 25 C 0.05 0.64 4.77 -2.84 -0.01 0.62 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 1.04 7.15 -51.93 -0.37 0.67 16 28 H 0.04 0.78 7.48 -51.93 -0.39 0.39 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.03 0.49 8.00 -51.93 -0.42 0.08 16 34 H 0.04 0.54 7.72 -51.93 -0.40 0.14 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 38 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.53 7.61 -51.93 -0.40 0.14 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.08 0.81 7.19 -51.93 -0.37 0.43 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 1.00 7.48 -51.93 -0.39 0.61 16 48 H 0.06 0.97 6.05 -51.93 -0.31 0.66 16 LS Contribution 360.59 15.07 5.43 5.43 Total: -1.00 -30.20 360.59 -10.17 -40.37 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -9.21 Total: -3.06 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -0.70 Total: -19.63 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: -0.30 Total: -35.38 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.38 Total: -4.53 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.20 -10.17 -40.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602480806.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.301 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds