Wall clock time and date at job start Tue Mar 31 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.47297 * 2 1 4 4 C 1.53002 * 109.46882 * 240.00266 * 2 1 3 5 5 C 1.50702 * 109.47080 * 65.00063 * 4 2 1 6 6 H 1.07987 * 120.00267 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99554 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00281 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99394 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47627 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47069 * 120.00553 * 9 7 5 12 12 H 1.48504 * 109.47000 * 239.99687 * 9 7 5 13 13 C 1.52994 * 109.47092 * 120.00368 * 2 1 3 14 14 N 1.46903 * 109.46971 * 295.77664 * 13 2 1 15 15 C 1.47911 * 110.99646 * 176.92684 * 14 13 2 16 16 C 1.53991 * 107.05242 * 145.84425 * 15 14 13 17 17 C 1.54602 * 105.14355 * 358.77327 * 16 15 14 18 18 H 1.08996 * 110.87342 * 96.47558 * 17 16 15 19 19 C 1.53002 * 110.72251 * 219.68513 * 17 16 15 20 20 C 1.53176 * 109.54123 * 293.32302 * 19 17 16 21 21 C 1.53114 * 109.15484 * 183.24274 * 20 19 17 22 22 O 1.42902 * 109.48523 * 57.47497 * 21 20 19 23 23 C 1.42903 * 114.10074 * 298.89070 * 22 21 20 24 24 C 1.53097 * 109.41648 * 61.15305 * 23 22 21 25 25 C 1.48530 * 111.00001 * 294.31987 * 14 13 2 26 26 H 1.08999 * 109.46677 * 304.83374 * 1 2 3 27 27 H 1.08997 * 109.46856 * 64.83156 * 1 2 3 28 28 H 1.09001 * 109.47307 * 184.83050 * 1 2 3 29 29 H 1.09000 * 109.46914 * 185.00201 * 4 2 1 30 30 H 1.09000 * 109.47339 * 305.00332 * 4 2 1 31 31 H 0.97003 * 120.00119 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47526 * 175.77593 * 13 2 1 33 33 H 1.09003 * 109.46941 * 55.77459 * 13 2 1 34 34 H 1.08999 * 109.91825 * 26.49292 * 15 14 13 35 35 H 1.09001 * 110.07983 * 265.28377 * 15 14 13 36 36 H 1.08999 * 110.30903 * 239.85350 * 16 15 14 37 37 H 1.09000 * 110.39220 * 117.73444 * 16 15 14 38 38 H 1.08997 * 109.54403 * 53.50500 * 19 17 16 39 39 H 1.08995 * 109.52956 * 303.05734 * 20 19 17 40 40 H 1.08998 * 109.52497 * 63.25475 * 20 19 17 41 41 H 1.09000 * 109.40535 * 297.49438 * 21 20 19 42 42 H 1.08999 * 109.49043 * 177.50710 * 21 20 19 43 43 H 1.09007 * 109.47733 * 301.18004 * 23 22 21 44 44 H 1.08994 * 109.49515 * 181.14548 * 23 22 21 45 45 H 1.08996 * 109.52562 * 182.48443 * 24 23 22 46 46 H 1.09003 * 109.51812 * 62.30133 * 24 23 22 47 47 H 1.09002 * 110.66091 * 81.84810 * 25 14 13 48 48 H 1.09000 * 110.66958 * 318.72107 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6763 -1.5186 -3.8512 9 14 1.4996 0.5637 -5.2496 10 1 0.7432 1.7752 -4.8433 11 1 2.7180 0.9684 -5.9959 12 1 0.6459 -0.2852 -6.1190 13 6 2.0400 -0.7213 1.2491 14 7 1.6354 0.0275 2.4465 15 6 2.0483 -0.6793 3.6784 16 6 2.4052 0.3981 4.7191 17 6 2.1994 1.7465 3.9914 18 1 1.2161 2.1614 4.2132 19 6 3.3012 2.7389 4.3685 20 6 3.1698 3.1124 5.8482 21 6 4.2250 4.1660 6.1959 22 8 4.0599 5.3041 5.3476 23 6 4.2200 5.0225 3.9558 24 6 3.1634 4.0050 3.5175 25 6 2.3041 1.3529 2.4966 26 1 -0.3632 0.5870 0.8435 27 1 -0.3633 0.4370 -0.9301 28 1 -0.3634 -1.0240 0.0865 29 1 3.1263 -0.7995 -1.2056 30 1 1.6053 -1.7197 -1.2953 31 1 2.9236 -1.8416 -4.7319 32 1 3.1274 -0.7874 1.2122 33 1 1.6162 -1.7248 1.2877 34 1 2.9195 -1.3020 3.4749 35 1 1.2293 -1.2962 4.0483 36 1 3.4437 0.2920 5.0327 37 1 1.7415 0.3282 5.5810 38 1 4.2764 2.2853 4.1920 39 1 2.1758 3.5189 6.0345 40 1 3.3227 2.2253 6.4628 41 1 5.2195 3.7447 6.0495 42 1 4.1079 4.4683 7.2366 43 1 5.2145 4.6123 3.7800 44 1 4.0993 5.9416 3.3825 45 1 3.3115 3.7556 2.4668 46 1 2.1692 4.4301 3.6552 47 1 1.7770 2.0735 1.8712 48 1 3.3475 1.2691 2.1930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602480809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:35 Heat of formation + Delta-G solvation = -77.285194 kcal Electronic energy + Delta-G solvation = -22946.359205 eV Core-core repulsion = 19806.599663 eV Total energy + Delta-G solvation = -3139.759542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.06594 -38.59166 -35.73867 -34.08550 -32.26306 -31.39424 -30.19771 -28.69723 -26.79824 -25.70883 -24.32512 -23.79291 -22.62764 -20.89759 -20.57020 -19.99847 -18.74663 -16.61520 -16.31210 -16.19239 -15.90697 -15.08846 -14.91912 -14.48552 -14.42807 -14.05154 -13.90531 -13.64914 -12.98698 -12.83866 -12.62439 -12.47861 -12.17750 -11.73938 -11.62622 -11.49190 -11.45478 -11.30227 -11.25433 -11.08442 -10.83207 -10.68874 -10.56635 -10.39136 -10.35033 -10.25543 -10.16004 -9.65095 -9.61588 -9.12310 -8.92614 -8.32355 -8.08458 -5.96997 -3.97902 3.32301 3.39959 3.44116 3.66585 4.17444 4.35929 4.48115 4.54926 4.64945 4.76725 4.83726 4.91027 5.04420 5.11755 5.17188 5.27428 5.38898 5.40622 5.45939 5.54836 5.56663 5.65487 5.69286 5.70606 5.76604 5.80623 5.87390 5.88726 5.96012 6.06852 6.10208 6.17012 6.22302 6.32961 6.43309 6.55476 6.71452 6.97470 7.04017 7.10385 7.22438 7.30094 7.45256 7.70917 7.86778 8.03526 8.47822 9.08750 9.65451 11.14616 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020498 B = 0.003503 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.627085 B = 7991.403475 C = 8923.755979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.053 3.947 14 N -0.514 5.514 15 C 0.034 3.966 16 C -0.123 4.123 17 C -0.084 4.084 18 H 0.082 0.918 19 C -0.079 4.079 20 C -0.149 4.149 21 C 0.060 3.940 22 O -0.386 6.386 23 C 0.060 3.940 24 C -0.153 4.153 25 C 0.044 3.956 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.038 0.962 29 H 0.011 0.989 30 H 0.016 0.984 31 H 0.259 0.741 32 H 0.028 0.972 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.240 8.153 20.640 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.099 4.099 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.075 4.075 14 N -0.237 5.237 15 C -0.095 4.095 16 C -0.162 4.162 17 C -0.104 4.104 18 H 0.100 0.900 19 C -0.098 4.098 20 C -0.187 4.187 21 C -0.017 4.017 22 O -0.305 6.305 23 C -0.017 4.017 24 C -0.190 4.190 25 C -0.084 4.084 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.067 0.933 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.703 8.252 20.543 22.204 hybrid contribution 0.783 -0.146 -1.104 1.361 sum 2.486 8.106 19.439 21.207 Atomic orbital electron populations 1.21580 0.95741 1.00307 1.00314 1.21187 0.95969 0.98954 0.93749 0.92769 1.19128 0.95828 0.95601 0.90523 1.21271 1.34404 1.08269 0.90960 0.92515 1.25025 0.95363 0.95101 0.99098 1.69977 1.39220 1.21275 1.23234 0.86584 0.78243 0.80162 0.83312 1.19727 1.21128 1.21082 1.22493 0.97332 0.97609 0.90058 1.64785 1.54546 1.02758 1.01637 1.22832 0.99198 0.96371 0.91062 1.22443 1.01090 0.94477 0.98147 1.22119 0.98758 0.94286 0.95189 0.90000 1.21219 0.98941 0.95204 0.94471 1.22242 1.00538 0.99282 0.96636 1.22572 0.97505 0.87029 0.94558 1.87919 1.92584 1.33119 1.16832 1.22608 0.97630 0.99444 0.81992 1.22270 1.00522 0.95633 1.00620 1.23241 0.97337 0.92377 0.95476 0.94117 0.92606 0.94281 0.97039 0.96609 0.93177 0.95343 0.91340 0.94177 0.90813 0.91815 0.91404 0.91187 0.90978 0.90872 0.93417 0.89123 0.93287 0.88855 0.90268 0.90837 0.89955 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.90 37.16 0.33 -2.09 16 2 C -0.08 -1.65 2.28 -90.62 -0.21 -1.86 16 3 H 0.05 1.14 6.90 -51.93 -0.36 0.78 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.38 8.34 -34.44 -0.29 -14.67 16 6 H 0.06 1.56 7.07 -52.49 -0.37 1.19 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.05 0.94 4.09 -3.83 -0.02 0.92 16 14 N -0.51 -7.76 4.80 -230.45 -1.11 -8.87 16 15 C 0.03 0.42 6.70 -2.75 -0.02 0.40 16 16 C -0.12 -1.25 5.74 -25.37 -0.15 -1.40 16 17 C -0.08 -0.90 2.61 -88.76 -0.23 -1.13 16 18 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 19 C -0.08 -0.74 1.68 -90.44 -0.15 -0.89 16 20 C -0.15 -1.22 5.23 -26.58 -0.14 -1.36 16 21 C 0.06 0.50 6.84 37.22 0.25 0.75 16 22 O -0.39 -4.09 10.77 -35.23 -0.38 -4.47 16 23 C 0.06 0.55 6.84 37.21 0.25 0.81 16 24 C -0.15 -1.46 5.14 -26.59 -0.14 -1.60 16 25 C 0.04 0.59 4.01 -1.90 -0.01 0.58 16 26 H 0.04 0.73 7.87 -51.93 -0.41 0.32 16 27 H 0.05 1.18 6.82 -51.93 -0.35 0.83 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.03 0.52 7.99 -51.93 -0.41 0.10 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.04 0.51 7.77 -51.93 -0.40 0.11 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.60 7.80 -51.93 -0.41 0.19 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.52 7.62 -51.93 -0.40 0.13 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 0.79 7.39 -51.93 -0.38 0.41 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.08 1.19 7.56 -51.93 -0.39 0.79 16 48 H 0.04 0.61 7.83 -51.93 -0.41 0.20 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -30.21 362.87 -10.37 -40.58 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -9.34 Total: -3.61 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -0.72 Total: -19.48 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.37 Total: -35.25 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.38 Total: -4.47 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.21 -10.37 -40.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602480809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.702 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds