Wall clock time and date at job start Tue Mar 31 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47004 * 2 1 4 4 C 1.52998 * 109.47060 * 120.00237 * 2 1 3 5 5 C 1.50700 * 109.47180 * 297.94317 * 4 2 1 6 6 H 1.08005 * 119.99816 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00304 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00220 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99990 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47014 * 90.00064 * 9 7 5 11 11 H 1.48494 * 109.47293 * 210.00116 * 9 7 5 12 12 H 1.48501 * 109.46773 * 330.00129 * 9 7 5 13 13 C 1.53001 * 109.46791 * 240.00086 * 2 1 3 14 14 N 1.46905 * 109.46837 * 178.07849 * 13 2 1 15 15 C 1.47898 * 110.99901 * 85.75819 * 14 13 2 16 16 C 1.53996 * 107.05611 * 214.15426 * 15 14 13 17 17 C 1.54597 * 105.13883 * 1.22779 * 16 15 14 18 18 H 1.09002 * 110.72082 * 263.41613 * 17 16 15 19 19 C 1.53006 * 110.72119 * 140.31577 * 17 16 15 20 20 C 1.53183 * 109.54032 * 181.27691 * 19 17 16 21 21 C 1.53102 * 109.15488 * 183.24067 * 20 19 17 22 22 O 1.42908 * 109.48659 * 57.47356 * 21 20 19 23 23 C 1.42906 * 114.09719 * 298.88880 * 22 21 20 24 24 C 1.53085 * 109.41574 * 61.15764 * 23 22 21 25 25 C 1.48539 * 110.99878 * 328.36179 * 14 13 2 26 26 H 1.09005 * 109.46699 * 295.32798 * 1 2 3 27 27 H 1.08995 * 109.47393 * 55.32749 * 1 2 3 28 28 H 1.09003 * 109.46992 * 175.33394 * 1 2 3 29 29 H 1.08993 * 109.47377 * 57.94635 * 4 2 1 30 30 H 1.08997 * 109.47106 * 177.94905 * 4 2 1 31 31 H 0.97001 * 119.99456 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47224 * 298.07494 * 13 2 1 33 33 H 1.08999 * 109.46949 * 58.07780 * 13 2 1 34 34 H 1.09001 * 109.91636 * 333.50634 * 15 14 13 35 35 H 1.09006 * 109.91715 * 94.80479 * 15 14 13 36 36 H 1.09000 * 110.30848 * 120.14509 * 16 15 14 37 37 H 1.08998 * 110.30619 * 242.31028 * 16 15 14 38 38 H 1.08998 * 109.54304 * 301.44857 * 19 17 16 39 39 H 1.09004 * 109.51928 * 303.05383 * 20 19 17 40 40 H 1.08990 * 109.52452 * 63.24414 * 20 19 17 41 41 H 1.08993 * 109.40787 * 297.49276 * 21 20 19 42 42 H 1.09003 * 109.48158 * 177.49723 * 21 20 19 43 43 H 1.08997 * 109.47461 * 301.17307 * 23 22 21 44 44 H 1.09002 * 109.49055 * 181.14981 * 23 22 21 45 45 H 1.09004 * 109.52335 * 182.48407 * 24 23 22 46 46 H 1.08999 * 109.52129 * 62.29627 * 24 23 22 47 47 H 1.09001 * 110.66681 * 278.15603 * 25 14 13 48 48 H 1.08997 * 110.66509 * 41.28543 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5798 0.0179 2.4792 6 1 0.9828 0.9125 2.3798 7 6 1.9207 -0.4478 3.7313 8 7 1.5186 0.1971 4.8047 9 14 2.9538 -1.9946 3.9032 10 1 4.3930 -1.6292 3.9197 11 1 2.6039 -2.6853 5.1703 12 1 2.6857 -2.8988 2.7562 13 6 2.0400 -0.7213 -1.2493 14 7 3.5083 -0.6812 -1.2727 15 6 4.0815 -1.7988 -0.4919 16 6 5.3776 -1.2785 0.1569 17 6 5.4812 0.2013 -0.2784 18 1 6.1297 0.3029 -1.1486 19 6 5.9859 1.0709 0.8749 20 6 6.0478 2.5337 0.4247 21 6 6.6297 3.3837 1.5573 22 8 7.9213 2.8855 1.9120 23 6 7.9166 1.5374 2.3862 24 6 7.3885 0.6129 1.2862 25 6 4.0171 0.5606 -0.6360 26 1 -0.3633 0.4397 0.9289 27 1 -0.3634 0.5846 -0.8451 28 1 -0.3633 -1.0243 -0.0836 29 1 1.6470 -1.7377 1.2678 30 1 3.1294 -0.7533 1.2310 31 1 1.7582 -0.1308 5.6856 32 1 1.7051 -1.7584 -1.2322 33 1 1.6487 -0.2277 -2.1389 34 1 3.3788 -2.1108 0.2807 35 1 4.3072 -2.6360 -1.1525 36 1 5.3123 -1.3498 1.2426 37 1 6.2362 -1.8415 -0.2090 38 1 5.3087 0.9792 1.7241 39 1 6.6848 2.6171 -0.4559 40 1 5.0441 2.8835 0.1837 41 1 5.9702 3.3333 2.4235 42 1 6.7176 4.4187 1.2267 43 1 7.2739 1.4630 3.2633 44 1 8.9314 1.2422 2.6530 45 1 7.3426 -0.4097 1.6608 46 1 8.0534 0.6563 0.4236 47 1 3.9859 1.3937 -1.3382 48 1 3.4473 0.7929 0.2637 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602480811.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:37 Heat of formation + Delta-G solvation = -54.895401 kcal Electronic energy + Delta-G solvation = -24480.782640 eV Core-core repulsion = 21341.993993 eV Total energy + Delta-G solvation = -3138.788647 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.07621 -38.75745 -35.58537 -33.63232 -32.28206 -31.09709 -30.19618 -28.54547 -27.75566 -25.36462 -23.98763 -23.53486 -22.84985 -20.64466 -20.22010 -19.71578 -18.74451 -16.92564 -16.35019 -15.86481 -15.60901 -15.19620 -14.66434 -14.44219 -14.28360 -13.72038 -13.65504 -13.33572 -13.07013 -12.90147 -12.43343 -12.31724 -12.21369 -11.82452 -11.39584 -11.32159 -11.21045 -11.15331 -11.07240 -11.01123 -10.83695 -10.72783 -10.50140 -10.17193 -10.09264 -10.04456 -9.91598 -9.69266 -9.51968 -9.34125 -9.15763 -8.58490 -7.72922 -6.09725 -4.06469 3.20730 3.30843 3.32565 3.96228 4.37841 4.43414 4.67881 4.87783 4.94166 5.08612 5.14616 5.21812 5.23714 5.37461 5.43985 5.48215 5.54508 5.66113 5.73050 5.74182 5.78881 5.87970 5.92778 5.97470 5.98339 6.00715 6.08250 6.11878 6.15651 6.21796 6.25588 6.31446 6.35145 6.40100 6.48288 6.50911 6.68636 6.72261 6.90164 7.02959 7.19407 7.27106 7.28462 7.35454 7.51928 7.75146 8.49458 8.95803 9.53259 11.03577 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.007387 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.148189 B = 3789.703134 C = 4680.754478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.070 0.930 4 C -0.020 4.020 5 C -0.513 4.513 6 H 0.073 0.927 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.869 3.131 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.045 3.955 14 N -0.515 5.515 15 C 0.020 3.980 16 C -0.126 4.126 17 C -0.078 4.078 18 H 0.074 0.926 19 C -0.085 4.085 20 C -0.147 4.147 21 C 0.058 3.942 22 O -0.388 6.388 23 C 0.059 3.941 24 C -0.148 4.148 25 C 0.019 3.981 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.042 0.958 29 H 0.012 0.988 30 H 0.027 0.973 31 H 0.262 0.738 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.503 0.685 -9.477 13.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.088 0.912 4 C -0.057 4.057 5 C -0.551 4.551 6 H 0.091 0.909 7 C -0.132 4.132 8 N -0.542 5.542 9 Si 0.696 3.304 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.191 1.191 13 C -0.083 4.083 14 N -0.238 5.238 15 C -0.108 4.108 16 C -0.164 4.164 17 C -0.098 4.098 18 H 0.093 0.907 19 C -0.104 4.104 20 C -0.184 4.184 21 C -0.018 4.018 22 O -0.307 6.307 23 C -0.018 4.018 24 C -0.186 4.186 25 C -0.109 4.109 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.107 0.893 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.818 0.738 -9.861 13.935 hybrid contribution -0.099 -1.086 1.142 1.580 sum 9.719 -0.348 -8.719 13.061 Atomic orbital electron populations 1.21681 0.95640 1.00484 1.01263 1.21695 0.96109 1.00227 0.95361 0.91193 1.19978 0.96409 0.95794 0.93510 1.21135 1.33320 1.11681 0.88942 0.90891 1.24985 0.95726 0.96518 0.95991 1.69909 1.46418 1.39941 0.97886 0.86952 0.81116 0.84596 0.77708 1.20175 1.21444 1.19066 1.22441 0.87567 1.00534 0.97780 1.65023 1.07462 1.02321 1.48966 1.23160 0.96210 0.94783 0.96661 1.22450 0.97430 0.95880 1.00645 1.22018 0.96633 0.93998 0.97104 0.90740 1.21262 0.96375 0.94154 0.98570 1.22202 1.01898 0.95432 0.98889 1.22606 0.84684 0.97514 0.97022 1.87873 1.29412 1.28300 1.85072 1.22578 1.01462 0.82012 0.95710 1.22219 0.97005 0.99810 0.99535 1.23693 0.94312 0.93028 0.99831 0.91215 0.94751 0.93905 0.96998 0.95540 0.92819 0.91919 0.91638 0.91434 0.91611 0.91424 0.91785 0.90026 0.91426 0.90495 0.92800 0.89163 0.93013 0.89290 0.90941 0.91337 0.91157 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.05 37.16 0.34 -2.09 16 2 C -0.11 -2.17 1.84 -90.62 -0.17 -2.33 16 3 H 0.07 1.36 6.08 -51.93 -0.32 1.04 16 4 C -0.02 -0.45 1.51 -27.88 -0.04 -0.49 16 5 C -0.51 -13.81 8.88 -34.44 -0.31 -14.11 16 6 H 0.07 2.13 7.11 -52.48 -0.37 1.76 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 9 Si 0.87 21.08 27.47 -169.99 -4.67 16.41 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 C 0.05 0.75 5.36 -3.82 -0.02 0.73 16 14 N -0.52 -8.39 5.54 -230.45 -1.28 -9.66 16 15 C 0.02 0.32 5.66 -2.75 -0.02 0.30 16 16 C -0.13 -1.90 5.05 -25.37 -0.13 -2.03 16 17 C -0.08 -1.12 2.60 -88.76 -0.23 -1.35 16 18 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 19 C -0.08 -1.20 1.66 -90.43 -0.15 -1.35 16 20 C -0.15 -1.88 5.21 -26.58 -0.14 -2.02 16 21 C 0.06 0.76 6.84 37.21 0.25 1.01 16 22 O -0.39 -5.49 10.77 -35.23 -0.38 -5.87 16 23 C 0.06 0.76 6.84 37.20 0.25 1.02 16 24 C -0.15 -1.88 5.16 -26.60 -0.14 -2.02 16 25 C 0.02 0.30 4.01 -1.90 -0.01 0.29 16 26 H 0.07 1.44 6.62 -51.93 -0.34 1.09 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.01 0.28 6.88 -51.93 -0.36 -0.08 16 30 H 0.03 0.58 3.16 -51.93 -0.16 0.42 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.06 1.03 7.82 -51.93 -0.41 0.63 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.25 4.83 -51.93 -0.25 1.00 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.13 7.42 -51.93 -0.39 0.74 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.39 8.13 -51.93 -0.42 0.97 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.98 7.55 -51.93 -0.39 0.59 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.91 7.29 -51.93 -0.38 0.53 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 48 H 0.09 1.64 3.91 -51.93 -0.20 1.44 16 LS Contribution 344.55 15.07 5.19 5.19 Total: -1.00 -28.89 344.55 -9.61 -38.50 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -8.65 Total: 4.34 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -0.60 Total: -22.62 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.50 Total: -35.96 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.38 Total: -5.87 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.89 -9.61 -38.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602480811.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.396 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds