Wall clock time and date at job start Tue Mar 31 2020 06:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.46747 * 2 1 4 4 C 1.42901 * 114.00084 * 179.97438 * 3 2 1 5 5 H 1.09004 * 112.94434 * 21.90466 * 4 3 2 6 6 C 1.53950 * 113.66713 * 250.49933 * 4 3 2 7 7 C 1.53952 * 87.37851 * 270.29797 * 6 4 3 8 8 H 1.08995 * 113.66287 * 89.69643 * 7 6 4 9 9 N 1.46894 * 113.66199 * 220.66336 * 7 6 4 10 10 C 1.46900 * 110.99897 * 255.49464 * 9 7 6 11 11 C 1.53007 * 109.47149 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47006 * 304.99704 * 11 10 9 13 13 C 1.52998 * 109.47190 * 64.99617 * 11 10 9 14 14 C 1.52997 * 109.46974 * 184.99961 * 11 10 9 15 15 C 1.50699 * 109.47080 * 174.99738 * 14 11 10 16 16 H 1.08007 * 119.99980 * 0.02562 * 15 14 11 17 17 C 1.37880 * 120.00262 * 180.02562 * 15 14 11 18 18 N 1.31522 * 119.99843 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00183 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47224 * 59.99714 * 19 17 15 21 21 H 1.48495 * 109.47307 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47201 * 299.99697 * 19 17 15 23 23 C 1.52914 * 86.78196 * 335.22484 * 7 6 4 24 24 C 1.52906 * 121.13872 * 259.18122 * 23 7 6 25 25 C 1.53949 * 86.78398 * 209.38011 * 24 23 7 26 26 C 1.52908 * 121.13734 * 150.61924 * 23 7 6 27 27 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47233 * 300.00054 * 1 2 3 29 29 H 1.08998 * 109.47232 * 60.00125 * 1 2 3 30 30 H 1.09000 * 109.47233 * 239.99946 * 2 1 3 31 31 H 1.08998 * 109.47232 * 119.99875 * 2 1 3 32 32 H 1.09002 * 113.58302 * 155.65398 * 6 4 3 33 33 H 1.09004 * 113.57731 * 24.93571 * 6 4 3 34 34 H 1.00897 * 111.00670 * 131.53990 * 9 7 6 35 35 H 1.08997 * 109.47208 * 299.99915 * 10 9 7 36 36 H 1.09003 * 109.47504 * 60.00266 * 10 9 7 37 37 H 1.08993 * 109.47632 * 300.00421 * 13 11 10 38 38 H 1.09006 * 109.46532 * 60.00665 * 13 11 10 39 39 H 1.08997 * 109.47078 * 179.97438 * 13 11 10 40 40 H 1.09003 * 109.47432 * 294.99829 * 14 11 10 41 41 H 1.08997 * 109.47510 * 55.00048 * 14 11 10 42 42 H 0.96995 * 119.99445 * 179.97438 * 18 17 15 43 43 H 1.08998 * 113.66290 * 323.85341 * 24 23 7 44 44 H 1.08999 * 113.66439 * 94.90552 * 24 23 7 45 45 H 1.09000 * 113.57955 * 270.13047 * 25 24 23 46 46 H 1.08999 * 113.65113 * 139.34661 * 25 24 23 47 47 H 1.09002 * 113.66204 * 265.09202 * 26 23 7 48 48 H 1.09003 * 113.66133 * 36.14223 * 26 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9281 0.5653 -0.3736 6 6 4.0091 1.9785 1.3299 7 6 3.8608 3.4003 0.7585 8 1 2.8950 3.8586 0.9707 9 7 4.9929 4.2825 1.0716 10 6 4.6380 5.2395 2.1280 11 6 5.8392 6.1394 2.4255 12 1 6.7036 5.5223 2.6706 13 6 6.1541 6.9928 1.1953 14 6 5.5120 7.0519 3.6092 15 6 6.7347 7.8508 3.9806 16 1 7.6532 7.7209 3.4274 17 6 6.6808 8.7474 5.0266 18 7 5.5622 8.9060 5.7000 19 14 8.1962 9.7381 5.4866 20 1 8.6181 10.5644 4.3270 21 1 7.8787 10.6237 6.6355 22 1 9.2963 8.8142 5.8624 23 6 3.9447 2.7592 -0.6273 24 6 5.2431 2.7877 -1.4344 25 6 4.3587 2.7674 -2.6943 26 6 3.2433 3.3866 -1.8325 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.0443 1.6826 1.5000 33 1 3.3673 1.7850 2.1895 34 1 5.3182 4.7608 0.2448 35 1 3.7991 5.8516 1.7970 36 1 4.3578 4.6968 3.0309 37 1 6.3872 6.3428 0.3521 38 1 5.2897 7.6100 0.9504 39 1 7.0095 7.6342 1.4074 40 1 4.7049 7.7304 3.3327 41 1 5.2017 6.4459 4.4603 42 1 5.5245 9.5365 6.4360 43 1 5.8126 3.7093 -1.3145 44 1 5.8531 1.8925 -1.3135 45 1 4.1285 1.7629 -3.0493 46 1 4.7127 3.4255 -3.4877 47 1 2.2557 2.9697 -2.0297 48 1 3.2507 4.4766 -1.8244 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602546186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:52 Heat of formation + Delta-G solvation = -22.925415 kcal Electronic energy + Delta-G solvation = -22694.978735 eV Core-core repulsion = 19557.576410 eV Total energy + Delta-G solvation = -3137.402325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86223 -37.49742 -36.51400 -34.57169 -32.82244 -31.51730 -30.51841 -26.84188 -25.88090 -25.70689 -24.57362 -23.53749 -23.01019 -21.99151 -20.77293 -19.02055 -18.19644 -16.76549 -16.46453 -16.05386 -15.78389 -15.46331 -14.95841 -14.63856 -14.31866 -13.81250 -13.27624 -13.13817 -12.98448 -12.90127 -12.48535 -12.41799 -12.21217 -11.93995 -11.86183 -11.70876 -11.59912 -11.36981 -11.31061 -11.04125 -10.85231 -10.70979 -10.49828 -10.33035 -10.23358 -10.06602 -9.93545 -9.66037 -9.43465 -9.07663 -8.90272 -8.29164 -8.04452 -5.94007 -3.95121 3.29130 3.36650 3.40903 3.43425 4.34107 4.37503 4.48905 4.52347 4.67015 4.72363 4.80755 4.88288 4.90586 4.97141 5.10135 5.15534 5.31965 5.41534 5.43715 5.56550 5.62034 5.64298 5.69589 5.79792 5.82870 5.84526 5.89119 5.93560 5.96212 6.03032 6.09683 6.18721 6.27940 6.35166 6.44866 6.53772 6.62589 7.01820 7.12456 7.15255 7.22797 7.51019 7.73220 7.76304 7.91408 8.06681 8.50464 9.11166 9.67943 11.17538 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026590 B = 0.003111 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.792365 B = 8999.456618 C = 9662.481337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.363 6.363 4 C 0.089 3.911 5 H 0.072 0.928 6 C -0.142 4.142 7 C 0.080 3.920 8 H 0.072 0.928 9 N -0.676 5.676 10 C 0.064 3.936 11 C -0.084 4.084 12 H 0.064 0.936 13 C -0.133 4.133 14 C 0.028 3.972 15 C -0.513 4.513 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.104 4.104 24 C -0.103 4.103 25 C -0.142 4.142 26 C -0.125 4.125 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.336 0.664 35 H 0.022 0.978 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.014 0.986 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.731 -17.821 -15.861 24.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.282 6.282 4 C 0.030 3.970 5 H 0.090 0.910 6 C -0.181 4.181 7 C -0.030 4.030 8 H 0.090 0.910 9 N -0.308 5.308 10 C -0.064 4.064 11 C -0.103 4.103 12 H 0.083 0.917 13 C -0.190 4.190 14 C -0.009 4.009 15 C -0.551 4.551 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.104 4.104 24 C -0.141 4.141 25 C -0.180 4.180 26 C -0.162 4.162 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.157 0.843 35 H 0.040 0.960 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.649 -17.992 -15.278 24.521 hybrid contribution 0.292 1.012 -0.015 1.054 sum -6.357 -16.979 -15.292 23.718 Atomic orbital electron populations 1.21741 0.93787 1.02123 1.03211 1.22497 0.95490 0.83988 0.99928 1.87881 1.19746 1.26005 1.94567 1.22677 0.81244 0.96180 0.96902 0.90995 1.23552 1.01588 0.96371 0.96557 1.22689 0.93522 0.93070 0.93747 0.90978 1.60735 1.33295 1.24004 1.12753 1.22171 0.97496 0.92703 0.94080 1.21215 0.96192 0.95858 0.96999 0.91714 1.21733 1.01682 0.99103 0.96531 1.19100 0.96775 0.93547 0.91503 1.21212 0.97292 1.21709 1.14884 0.92644 1.25025 0.95862 0.97223 0.96461 1.69963 1.25832 1.36461 1.21456 0.86692 0.83497 0.80095 0.77910 1.20333 1.21395 1.20283 1.22994 0.97827 0.96030 0.93588 1.22504 0.94672 1.02827 0.94049 1.22866 0.97420 1.00933 0.96744 1.22646 0.98401 1.00066 0.95122 0.91210 0.91734 0.91930 0.93587 0.93358 0.88594 0.91326 0.84295 0.95962 0.91584 0.95078 0.94084 0.91915 0.96811 0.96697 0.93070 0.89015 0.91306 0.90647 0.91507 0.90951 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.50 6.51 37.16 0.24 0.74 16 3 O -0.36 -4.18 9.85 -35.23 -0.35 -4.52 16 4 C 0.09 0.97 4.16 -26.15 -0.11 0.86 16 5 H 0.07 0.69 7.90 -51.93 -0.41 0.28 16 6 C -0.14 -1.76 7.71 -25.75 -0.20 -1.96 16 7 C 0.08 1.08 3.94 -67.26 -0.26 0.82 16 8 H 0.07 1.09 7.90 -51.93 -0.41 0.68 16 9 N -0.68 -10.20 6.28 -106.25 -0.67 -10.87 16 10 C 0.06 1.16 5.01 -3.82 -0.02 1.14 16 11 C -0.08 -1.75 2.55 -90.62 -0.23 -1.98 16 12 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.13 -2.53 8.77 37.16 0.33 -2.20 16 14 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 15 C -0.51 -14.55 8.41 -34.44 -0.29 -14.84 16 16 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 19 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.10 -1.16 0.92 -154.58 -0.14 -1.30 16 24 C -0.10 -1.03 7.38 -26.28 -0.19 -1.22 16 25 C -0.14 -1.28 8.08 -25.75 -0.21 -1.49 16 26 C -0.12 -1.32 7.72 -26.28 -0.20 -1.52 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.34 4.82 5.30 -39.29 -0.21 4.61 16 35 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.09 0.96 6.76 -51.93 -0.35 0.61 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.79 7.84 -51.93 -0.41 0.38 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -30.07 374.70 -9.97 -40.04 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -9.19 Total: 1.00 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -1.13 Total: -21.59 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.07 Total: -37.51 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.35 Total: -4.52 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.07 -9.97 -40.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602546186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.113 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds