Wall clock time and date at job start Tue Mar 31 2020 06:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.47242 * 2 1 4 4 C 1.42899 * 113.99911 * 180.02562 * 3 2 1 5 5 H 1.08999 * 112.94814 * 18.59721 * 4 3 2 6 6 C 1.53948 * 113.66250 * 247.19185 * 4 3 2 7 7 C 1.53956 * 87.29183 * 220.79608 * 6 4 3 8 8 H 1.09005 * 113.66118 * 270.26017 * 7 6 4 9 9 N 1.46898 * 113.66328 * 139.20979 * 7 6 4 10 10 C 1.46893 * 111.00442 * 107.80962 * 9 7 6 11 11 C 1.53001 * 109.47189 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46907 * 55.00237 * 11 10 9 13 13 C 1.52995 * 109.47336 * 294.99980 * 11 10 9 14 14 C 1.53004 * 109.47071 * 174.99905 * 11 10 9 15 15 C 1.50701 * 109.46956 * 184.99992 * 14 11 10 16 16 H 1.08004 * 120.00270 * 0.02562 * 15 14 11 17 17 C 1.37874 * 120.00281 * 179.97438 * 15 14 11 18 18 N 1.31521 * 119.99844 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00561 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47305 * 59.99941 * 19 17 15 21 21 H 1.48494 * 109.47218 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47056 * 300.00179 * 19 17 15 23 23 C 1.52907 * 86.78503 * 24.73059 * 7 6 4 24 24 C 1.52906 * 121.13720 * 209.38073 * 23 7 6 25 25 C 1.53954 * 86.88484 * 259.13292 * 24 23 7 26 26 C 1.52914 * 121.13343 * 100.81935 * 23 7 6 27 27 H 1.08997 * 109.47451 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47087 * 299.99465 * 1 2 3 29 29 H 1.08996 * 109.47376 * 59.99559 * 1 2 3 30 30 H 1.09001 * 109.46631 * 240.00562 * 2 1 3 31 31 H 1.08996 * 109.47376 * 120.00441 * 2 1 3 32 32 H 1.08994 * 113.57916 * 335.39473 * 6 4 3 33 33 H 1.08998 * 113.58166 * 106.11506 * 6 4 3 34 34 H 1.00904 * 110.99896 * 343.85148 * 9 7 6 35 35 H 1.09000 * 109.47175 * 299.99924 * 10 9 7 36 36 H 1.08997 * 109.47426 * 60.00057 * 10 9 7 37 37 H 1.09005 * 109.47351 * 60.00108 * 13 11 10 38 38 H 1.08998 * 109.47382 * 179.97438 * 13 11 10 39 39 H 1.08999 * 109.47333 * 299.99997 * 13 11 10 40 40 H 1.08993 * 109.47379 * 304.99801 * 14 11 10 41 41 H 1.08997 * 109.47174 * 65.00111 * 14 11 10 42 42 H 0.97001 * 120.00168 * 179.97438 * 18 17 15 43 43 H 1.09002 * 113.66405 * 13.65456 * 24 23 7 44 44 H 1.08998 * 113.66160 * 144.61606 * 24 23 7 45 45 H 1.08999 * 113.57483 * 89.91371 * 25 24 23 46 46 H 1.08992 * 113.58410 * 220.70827 * 25 24 23 47 47 H 1.08998 * 113.65700 * 215.29256 * 26 23 7 48 48 H 1.08999 * 113.66069 * 346.25550 * 26 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9295 0.5453 -0.3210 6 6 4.0042 2.0535 1.2991 7 6 4.9810 2.8525 0.4171 8 1 5.9153 2.3291 0.2141 9 7 5.1855 4.2357 0.8676 10 6 6.5195 4.4050 1.4589 11 6 6.6951 5.8550 1.9144 12 1 5.8830 6.1246 2.5897 13 6 6.6726 6.7790 0.6952 14 6 8.0332 6.0026 2.6416 15 6 8.1518 7.3986 3.1969 16 1 7.3526 8.1093 3.0467 17 6 9.2802 7.7682 3.8977 18 7 10.2533 6.9027 4.0812 19 14 9.4269 9.4983 4.5867 20 1 8.3153 9.7477 5.5393 21 1 10.7256 9.6415 5.2923 22 1 9.3566 10.4811 3.4757 23 6 3.9466 2.7177 -0.7009 24 6 4.3696 2.6876 -2.1700 25 6 3.9450 4.1660 -2.2355 26 6 3.0049 3.8708 -1.0500 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.2960 2.6790 1.8423 33 1 4.4931 1.3167 1.9363 34 1 4.4645 4.5153 1.5158 35 1 6.6243 3.7394 2.3156 36 1 7.2796 4.1635 0.7159 37 1 5.7193 6.6739 0.1772 38 1 6.7973 7.8121 1.0198 39 1 7.4847 6.5095 0.0200 40 1 8.0850 5.2816 3.4572 41 1 8.8489 5.8193 1.9422 42 1 11.0473 7.1628 4.5739 43 1 5.4389 2.5327 -2.3143 44 1 3.7588 2.0293 -2.7877 45 1 4.7482 4.8615 -1.9922 46 1 3.4206 4.4288 -3.1541 47 1 2.0096 3.5461 -1.3532 48 1 2.9828 4.6603 -0.2988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602546187.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:58 Heat of formation + Delta-G solvation = -25.432465 kcal Electronic energy + Delta-G solvation = -22716.596354 eV Core-core repulsion = 19579.085316 eV Total energy + Delta-G solvation = -3137.511039 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76404 -37.44511 -36.43346 -34.62147 -32.81246 -31.55428 -30.59037 -26.80783 -25.78740 -25.33899 -24.61610 -23.44295 -22.90162 -21.97753 -20.98346 -19.23719 -17.86735 -16.99163 -16.30058 -16.04191 -15.77891 -15.26132 -14.78508 -14.57628 -14.36065 -13.76080 -13.42589 -13.29475 -12.78879 -12.64947 -12.52749 -12.23040 -12.15691 -12.00920 -11.88562 -11.55975 -11.46793 -11.35043 -11.14320 -11.06195 -10.83370 -10.77431 -10.45468 -10.29110 -10.26313 -10.12402 -9.98969 -9.66654 -9.28908 -9.10141 -8.92232 -8.30500 -7.99761 -5.95532 -3.96529 3.35926 3.40134 3.42771 3.48300 4.36731 4.44304 4.49573 4.51930 4.60409 4.79537 4.85956 4.90684 4.98658 5.00487 5.10773 5.21508 5.40174 5.40880 5.43706 5.59849 5.62533 5.69781 5.71969 5.77586 5.82512 5.87339 5.94026 5.96662 6.04042 6.07032 6.19520 6.29605 6.44459 6.53684 6.59280 6.63497 6.72848 7.05804 7.15296 7.22033 7.24143 7.43494 7.68876 7.73194 7.88358 8.04905 8.49049 9.09740 9.66686 11.16000 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030153 B = 0.003022 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.366052 B = 9264.021675 C = 9624.096257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.368 6.368 4 C 0.074 3.926 5 H 0.083 0.917 6 C -0.181 4.181 7 C 0.095 3.905 8 H 0.096 0.904 9 N -0.668 5.668 10 C 0.064 3.936 11 C -0.082 4.082 12 H 0.052 0.948 13 C -0.122 4.122 14 C 0.028 3.972 15 C -0.512 4.512 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.090 4.090 24 C -0.127 4.127 25 C -0.132 4.132 26 C -0.096 4.096 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.340 0.660 35 H 0.024 0.976 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.052 0.948 39 H 0.038 0.962 40 H 0.012 0.988 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.056 0.944 47 H 0.077 0.923 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.461 -13.967 -10.831 24.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.287 6.287 4 C 0.016 3.984 5 H 0.101 0.899 6 C -0.220 4.220 7 C -0.017 4.017 8 H 0.114 0.886 9 N -0.297 5.297 10 C -0.064 4.064 11 C -0.101 4.101 12 H 0.071 0.929 13 C -0.179 4.179 14 C -0.010 4.010 15 C -0.550 4.550 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.091 4.091 24 C -0.165 4.165 25 C -0.169 4.169 26 C -0.133 4.133 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.159 0.841 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.030 0.970 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.197 -13.580 -11.363 23.997 hybrid contribution 0.319 0.061 1.381 1.419 sum -15.879 -13.519 -9.981 23.120 Atomic orbital electron populations 1.21736 0.93965 1.02017 1.03101 1.22476 0.95470 0.84488 0.99717 1.87955 1.20636 1.25549 1.94541 1.23363 0.80819 0.97536 0.96689 0.89881 1.24184 0.99598 1.00896 0.97370 1.22413 0.95855 0.89369 0.94017 0.88557 1.60363 1.04975 1.19476 1.44869 1.22184 0.89210 0.98272 0.96764 1.21190 1.00595 0.91524 0.96782 0.92911 1.21577 0.99571 0.99742 0.97019 1.19113 0.90465 0.96728 0.94686 1.21207 1.02654 0.97606 1.33573 0.92638 1.25022 0.95999 0.97114 0.96440 1.69959 1.07520 1.34531 1.41757 0.86692 0.77131 0.85154 0.79222 1.20327 1.21400 1.20266 1.22981 0.97056 0.94953 0.94107 1.22714 1.00747 0.97687 0.95309 1.22789 0.99938 0.96352 0.97842 1.22283 0.96565 0.96467 0.97998 0.91366 0.91877 0.91921 0.93686 0.93654 0.89106 0.91552 0.84082 0.95803 0.91643 0.93900 0.92889 0.94244 0.96998 0.96613 0.93074 0.91657 0.90736 0.89283 0.92475 0.90425 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.47 6.50 37.16 0.24 0.71 16 3 O -0.37 -4.11 9.66 -35.23 -0.34 -4.45 16 4 C 0.07 0.79 4.19 -26.28 -0.11 0.68 16 5 H 0.08 0.79 7.87 -51.93 -0.41 0.38 16 6 C -0.18 -2.04 7.54 -25.75 -0.19 -2.23 16 7 C 0.09 1.16 4.06 -67.26 -0.27 0.88 16 8 H 0.10 1.19 7.87 -51.93 -0.41 0.78 16 9 N -0.67 -9.38 5.18 -106.25 -0.55 -9.93 16 10 C 0.06 1.09 4.92 -3.83 -0.02 1.07 16 11 C -0.08 -1.66 2.48 -90.62 -0.22 -1.89 16 12 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 13 C -0.12 -2.36 8.89 37.15 0.33 -2.03 16 14 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 15 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 16 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 17 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 19 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.09 -1.01 1.07 -154.71 -0.17 -1.17 16 24 C -0.13 -1.36 7.83 -26.28 -0.21 -1.56 16 25 C -0.13 -1.49 8.10 -25.64 -0.21 -1.70 16 26 C -0.10 -1.12 7.16 -26.18 -0.19 -1.30 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 1.09 7.82 -51.93 -0.41 0.68 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.34 4.73 8.09 -39.29 -0.32 4.41 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 37 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 38 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.08 0.91 7.84 -51.93 -0.41 0.50 16 48 H 0.07 0.93 7.49 -51.93 -0.39 0.54 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -29.48 377.64 -10.00 -39.48 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -9.37 Total: 0.72 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -1.14 Total: -21.90 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.19 Total: -36.38 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.34 Total: -4.45 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.48 -10.00 -39.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602546187.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.045 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds