Wall clock time and date at job start Tue Mar 31 2020 06:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.47242 * 2 1 4 4 C 1.42899 * 113.99911 * 180.02562 * 3 2 1 5 5 H 1.09005 * 112.88280 * 18.65948 * 4 3 2 6 6 C 1.53948 * 113.66250 * 247.19185 * 4 3 2 7 7 C 1.53956 * 87.29183 * 220.79608 * 6 4 3 8 8 H 1.09005 * 113.66118 * 270.26017 * 7 6 4 9 9 N 1.46898 * 113.66328 * 139.20979 * 7 6 4 10 10 C 1.46893 * 111.00442 * 107.80962 * 9 7 6 11 11 C 1.53001 * 109.47189 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47332 * 305.00360 * 11 10 9 13 13 C 1.53004 * 109.47060 * 64.99887 * 11 10 9 14 14 C 1.53001 * 109.47402 * 184.99682 * 11 10 9 15 15 C 1.50694 * 109.47199 * 174.99877 * 14 11 10 16 16 H 1.07992 * 120.00523 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99903 * 180.02562 * 15 14 11 18 18 N 1.31512 * 119.99853 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99919 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47255 * 89.99879 * 19 17 15 21 21 H 1.48503 * 109.46990 * 209.99605 * 19 17 15 22 22 H 1.48492 * 109.47165 * 329.99917 * 19 17 15 23 23 C 1.52907 * 86.78503 * 24.73059 * 7 6 4 24 24 C 1.52906 * 121.13720 * 209.38073 * 23 7 6 25 25 C 1.53954 * 86.88484 * 259.13292 * 24 23 7 26 26 C 1.52914 * 121.13343 * 100.81935 * 23 7 6 27 27 H 1.08997 * 109.47451 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47087 * 299.99465 * 1 2 3 29 29 H 1.08996 * 109.47376 * 59.99559 * 1 2 3 30 30 H 1.09001 * 109.46631 * 240.00562 * 2 1 3 31 31 H 1.08996 * 109.47376 * 120.00441 * 2 1 3 32 32 H 1.08994 * 113.57916 * 335.39473 * 6 4 3 33 33 H 1.08999 * 113.58397 * 106.19197 * 6 4 3 34 34 H 1.00904 * 110.99896 * 343.85148 * 9 7 6 35 35 H 1.09000 * 109.47175 * 299.99924 * 10 9 7 36 36 H 1.08997 * 109.47426 * 60.00057 * 10 9 7 37 37 H 1.08998 * 109.47059 * 180.02562 * 13 11 10 38 38 H 1.08998 * 109.47394 * 299.99965 * 13 11 10 39 39 H 1.08998 * 109.46934 * 60.00535 * 13 11 10 40 40 H 1.09002 * 109.47394 * 295.00882 * 14 11 10 41 41 H 1.09004 * 109.46463 * 55.00043 * 14 11 10 42 42 H 0.97004 * 119.99574 * 180.02562 * 18 17 15 43 43 H 1.09002 * 113.66405 * 13.65456 * 24 23 7 44 44 H 1.08998 * 113.66160 * 144.61606 * 24 23 7 45 45 H 1.08999 * 113.57483 * 89.91371 * 25 24 23 46 46 H 1.08992 * 113.58410 * 220.70827 * 25 24 23 47 47 H 1.08998 * 113.65700 * 215.29256 * 26 23 7 48 48 H 1.08999 * 113.66069 * 346.25550 * 26 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9284 0.5451 -0.3222 6 6 4.0042 2.0535 1.2991 7 6 4.9810 2.8525 0.4171 8 1 5.9153 2.3291 0.2141 9 7 5.1855 4.2357 0.8676 10 6 6.5195 4.4050 1.4589 11 6 6.6951 5.8550 1.9144 12 1 6.5029 6.5250 1.0765 13 6 5.7098 6.1572 3.0453 14 6 8.1258 6.0625 2.4156 15 6 8.3353 7.5171 2.7489 16 1 7.5287 8.2230 2.6169 17 6 9.5569 7.9469 3.2223 18 7 10.5390 7.0872 3.3836 19 14 9.8164 9.7499 3.6361 20 1 9.4609 9.9876 5.0583 21 1 11.2405 10.1084 3.4153 22 1 8.9542 10.5870 2.7639 23 6 3.9466 2.7177 -0.7009 24 6 4.3696 2.6876 -2.1700 25 6 3.9450 4.1660 -2.2355 26 6 3.0049 3.8708 -1.0500 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.2960 2.6790 1.8423 33 1 4.4943 1.3170 1.9358 34 1 4.4645 4.5153 1.5158 35 1 6.6243 3.7394 2.3156 36 1 7.2796 4.1635 0.7159 37 1 5.8346 7.1903 3.3695 38 1 4.6906 6.0095 2.6883 39 1 5.9020 5.4873 3.8833 40 1 8.2895 5.4580 3.3078 41 1 8.8297 5.7625 1.6393 42 1 11.3983 7.3895 3.7170 43 1 5.4389 2.5327 -2.3143 44 1 3.7588 2.0293 -2.7877 45 1 4.7482 4.8615 -1.9922 46 1 3.4206 4.4288 -3.1541 47 1 2.0096 3.5461 -1.3532 48 1 2.9828 4.6603 -0.2988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602546188.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:02 Heat of formation + Delta-G solvation = -25.178715 kcal Electronic energy + Delta-G solvation = -22706.111999 eV Core-core repulsion = 19568.611964 eV Total energy + Delta-G solvation = -3137.500035 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.76521 -37.45154 -36.51598 -34.60389 -32.81781 -31.54239 -30.57331 -26.85841 -25.84690 -25.41697 -24.61401 -23.50193 -22.90821 -21.92969 -20.95641 -19.11240 -17.94117 -16.99051 -16.38599 -16.03566 -15.78446 -15.27733 -14.84673 -14.65946 -14.36019 -13.63617 -13.38221 -13.22432 -12.86875 -12.75635 -12.40872 -12.31870 -12.22003 -12.01128 -11.94031 -11.64852 -11.53576 -11.36486 -11.16555 -11.06005 -10.84028 -10.76443 -10.42510 -10.32804 -10.26672 -10.12584 -9.98502 -9.68508 -9.28916 -9.11144 -8.92658 -8.31086 -8.01711 -5.95865 -3.96769 3.34287 3.40631 3.44228 3.48154 4.37204 4.44320 4.49538 4.51871 4.60185 4.79602 4.86163 4.90690 4.98653 5.01165 5.10572 5.21560 5.40032 5.40631 5.43723 5.60500 5.62281 5.69731 5.74998 5.80058 5.82439 5.84815 5.88318 5.97049 6.01308 6.08046 6.10789 6.29835 6.30655 6.48076 6.55116 6.59191 6.63768 6.99796 7.13598 7.15242 7.20467 7.44027 7.69885 7.72887 7.88767 8.04742 8.48763 9.09716 9.66543 11.15689 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031907 B = 0.002994 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.347256 B = 9350.043344 C = 9599.229318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.368 6.368 4 C 0.075 3.925 5 H 0.084 0.916 6 C -0.181 4.181 7 C 0.094 3.906 8 H 0.097 0.903 9 N -0.670 5.670 10 C 0.064 3.936 11 C -0.084 4.084 12 H 0.065 0.935 13 C -0.134 4.134 14 C 0.028 3.972 15 C -0.512 4.512 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.090 4.090 24 C -0.127 4.127 25 C -0.132 4.132 26 C -0.096 4.096 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.341 0.659 35 H 0.023 0.977 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.031 0.969 39 H 0.040 0.960 40 H 0.013 0.987 41 H 0.015 0.985 42 H 0.259 0.741 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.057 0.943 47 H 0.078 0.922 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.352 -14.546 -8.457 24.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.287 6.287 4 C 0.016 3.984 5 H 0.102 0.898 6 C -0.220 4.220 7 C -0.017 4.017 8 H 0.115 0.885 9 N -0.301 5.301 10 C -0.064 4.064 11 C -0.103 4.103 12 H 0.083 0.917 13 C -0.191 4.191 14 C -0.009 4.009 15 C -0.550 4.550 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.091 4.091 24 C -0.165 4.165 25 C -0.169 4.169 26 C -0.133 4.133 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.161 0.839 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.088 -14.151 -9.012 23.947 hybrid contribution 0.382 0.113 1.213 1.277 sum -16.706 -14.038 -7.798 23.173 Atomic orbital electron populations 1.21736 0.93966 1.02017 1.03101 1.22477 0.95470 0.84488 0.99721 1.87954 1.20642 1.25551 1.94540 1.23364 0.80817 0.97548 0.96654 0.89847 1.24182 0.99592 1.00880 0.97385 1.22423 0.95891 0.89383 0.94027 0.88504 1.60404 1.05164 1.19551 1.44958 1.22172 0.89175 0.98278 0.96770 1.21214 0.98608 0.93056 0.97375 0.91661 1.21737 0.96717 1.02397 0.98244 1.19106 0.89147 0.96706 0.95990 1.21242 0.97112 0.93911 1.42737 0.92578 1.25023 0.96240 0.97372 0.95956 1.69968 1.03140 1.33973 1.46645 0.86634 0.77276 0.85668 0.78673 1.20778 1.21318 1.19882 1.22985 0.97058 0.94955 0.94147 1.22715 1.00789 0.97685 0.95262 1.22791 0.99941 0.96370 0.97839 1.22287 0.96588 0.96455 0.98019 0.91364 0.91885 0.91915 0.93673 0.93660 0.89153 0.91545 0.83855 0.95861 0.91562 0.91926 0.94993 0.94081 0.96818 0.96704 0.93132 0.91611 0.90715 0.89269 0.92435 0.90392 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.47 6.50 37.16 0.24 0.71 16 3 O -0.37 -4.12 9.66 -35.23 -0.34 -4.46 16 4 C 0.07 0.80 4.19 -26.28 -0.11 0.69 16 5 H 0.08 0.79 7.87 -51.93 -0.41 0.38 16 6 C -0.18 -2.05 7.54 -25.75 -0.19 -2.24 16 7 C 0.09 1.17 4.06 -67.26 -0.27 0.89 16 8 H 0.10 1.21 7.87 -51.93 -0.41 0.80 16 9 N -0.67 -9.63 5.73 -106.25 -0.61 -10.24 16 10 C 0.06 1.10 4.99 -3.83 -0.02 1.08 16 11 C -0.08 -1.70 2.55 -90.62 -0.23 -1.93 16 12 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 13 C -0.13 -2.50 8.77 37.16 0.33 -2.17 16 14 C 0.03 0.72 4.45 -27.89 -0.12 0.59 16 15 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 16 H 0.06 1.54 7.05 -52.49 -0.37 1.17 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 19 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.09 -1.03 1.07 -154.71 -0.17 -1.20 16 24 C -0.13 -1.38 7.83 -26.28 -0.21 -1.59 16 25 C -0.13 -1.53 8.10 -25.64 -0.21 -1.74 16 26 C -0.10 -1.14 7.16 -26.18 -0.19 -1.33 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 1.09 7.82 -51.93 -0.41 0.68 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.34 4.82 6.35 -39.29 -0.25 4.57 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 37 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 38 H 0.03 0.50 6.68 -51.93 -0.35 0.16 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.08 0.92 7.84 -51.93 -0.41 0.51 16 48 H 0.07 0.94 7.49 -51.93 -0.39 0.55 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -29.47 375.38 -9.98 -39.45 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -9.25 Total: 1.29 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -1.16 Total: -22.11 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.13 Total: -36.63 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.34 Total: -4.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.47 -9.98 -39.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602546188.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.267 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds