Wall clock time and date at job start Tue Mar 31 2020 06:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.47242 * 2 1 4 4 C 1.42899 * 113.99911 * 180.02562 * 3 2 1 5 5 H 1.09005 * 112.88280 * 18.65948 * 4 3 2 6 6 C 1.53948 * 113.66250 * 247.19185 * 4 3 2 7 7 C 1.53956 * 87.29183 * 220.79608 * 6 4 3 8 8 H 1.09005 * 113.66118 * 270.26017 * 7 6 4 9 9 N 1.46898 * 113.66328 * 139.20979 * 7 6 4 10 10 C 1.46893 * 111.00442 * 107.80962 * 9 7 6 11 11 C 1.53001 * 109.47189 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47332 * 305.00360 * 11 10 9 13 13 C 1.53004 * 109.47060 * 64.99887 * 11 10 9 14 14 C 1.53001 * 109.47402 * 184.99682 * 11 10 9 15 15 C 1.50694 * 109.47199 * 174.99877 * 14 11 10 16 16 H 1.07992 * 120.00523 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99903 * 180.02562 * 15 14 11 18 18 N 1.31512 * 119.99853 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99919 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47255 * 89.99879 * 19 17 15 21 21 H 1.48503 * 109.46990 * 209.99605 * 19 17 15 22 22 H 1.48492 * 109.47165 * 329.99917 * 19 17 15 23 23 C 1.52907 * 86.78503 * 24.73059 * 7 6 4 24 24 C 1.52906 * 121.13720 * 209.38073 * 23 7 6 25 25 C 1.53954 * 86.88484 * 259.13292 * 24 23 7 26 26 C 1.52914 * 121.13343 * 100.81935 * 23 7 6 27 27 H 1.08997 * 109.47451 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47087 * 299.99465 * 1 2 3 29 29 H 1.08996 * 109.47376 * 59.99559 * 1 2 3 30 30 H 1.09001 * 109.46631 * 240.00562 * 2 1 3 31 31 H 1.08996 * 109.47376 * 120.00441 * 2 1 3 32 32 H 1.08994 * 113.57916 * 335.39473 * 6 4 3 33 33 H 1.08999 * 113.58397 * 106.19197 * 6 4 3 34 34 H 1.00904 * 110.99896 * 343.85148 * 9 7 6 35 35 H 1.09000 * 109.47175 * 299.99924 * 10 9 7 36 36 H 1.08997 * 109.47426 * 60.00057 * 10 9 7 37 37 H 1.08998 * 109.47059 * 180.02562 * 13 11 10 38 38 H 1.08998 * 109.47394 * 299.99965 * 13 11 10 39 39 H 1.08998 * 109.46934 * 60.00535 * 13 11 10 40 40 H 1.09002 * 109.47394 * 295.00882 * 14 11 10 41 41 H 1.09004 * 109.46463 * 55.00043 * 14 11 10 42 42 H 0.97004 * 119.99574 * 180.02562 * 18 17 15 43 43 H 1.09002 * 113.66405 * 13.65456 * 24 23 7 44 44 H 1.08998 * 113.66160 * 144.61606 * 24 23 7 45 45 H 1.08999 * 113.57483 * 89.91371 * 25 24 23 46 46 H 1.08992 * 113.58410 * 220.70827 * 25 24 23 47 47 H 1.08998 * 113.65700 * 215.29256 * 26 23 7 48 48 H 1.08999 * 113.66069 * 346.25550 * 26 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9284 0.5451 -0.3222 6 6 4.0042 2.0535 1.2991 7 6 4.9810 2.8525 0.4171 8 1 5.9153 2.3291 0.2141 9 7 5.1855 4.2357 0.8676 10 6 6.5195 4.4050 1.4589 11 6 6.6951 5.8550 1.9144 12 1 6.5029 6.5250 1.0765 13 6 5.7098 6.1572 3.0453 14 6 8.1258 6.0625 2.4156 15 6 8.3353 7.5171 2.7489 16 1 7.5287 8.2230 2.6169 17 6 9.5569 7.9469 3.2223 18 7 10.5390 7.0872 3.3836 19 14 9.8164 9.7499 3.6361 20 1 9.4609 9.9876 5.0583 21 1 11.2405 10.1084 3.4153 22 1 8.9542 10.5870 2.7639 23 6 3.9466 2.7177 -0.7009 24 6 4.3696 2.6876 -2.1700 25 6 3.9450 4.1660 -2.2355 26 6 3.0049 3.8708 -1.0500 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.2960 2.6790 1.8423 33 1 4.4943 1.3170 1.9358 34 1 4.4645 4.5153 1.5158 35 1 6.6243 3.7394 2.3156 36 1 7.2796 4.1635 0.7159 37 1 5.8346 7.1903 3.3695 38 1 4.6906 6.0095 2.6883 39 1 5.9020 5.4873 3.8833 40 1 8.2895 5.4580 3.3078 41 1 8.8297 5.7625 1.6393 42 1 11.3983 7.3895 3.7170 43 1 5.4389 2.5327 -2.3143 44 1 3.7588 2.0293 -2.7877 45 1 4.7482 4.8615 -1.9922 46 1 3.4206 4.4288 -3.1541 47 1 2.0096 3.5461 -1.3532 48 1 2.9828 4.6603 -0.2988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602546188.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:00 Heat of formation + Delta-G solvation = -41.109302 kcal Electronic energy + Delta-G solvation = -22706.802801 eV Core-core repulsion = 19568.611964 eV Total energy + Delta-G solvation = -3138.190837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.68688 -38.35615 -37.89409 -35.85451 -34.57539 -32.85907 -31.49193 -28.81190 -27.12647 -26.51814 -25.51939 -24.96285 -23.71057 -23.27581 -21.87349 -20.73656 -19.00520 -18.47724 -17.79557 -16.92610 -16.63047 -16.60038 -16.28123 -15.95142 -15.63809 -15.08100 -14.51813 -14.39534 -14.09012 -13.87127 -13.74514 -13.38117 -13.28369 -13.23613 -13.08032 -12.86827 -12.74359 -12.72473 -12.51232 -12.32865 -12.21956 -12.07262 -11.89722 -11.88922 -11.51533 -11.30553 -11.12217 -11.04134 -10.98593 -10.74970 -10.52826 -10.11462 -9.19303 -8.17023 -6.25823 1.40205 1.41147 1.52269 2.42303 2.70458 3.16437 3.32431 3.53065 3.61811 3.74685 3.87843 3.98633 4.10003 4.21487 4.22492 4.29848 4.31543 4.43129 4.45823 4.52754 4.54463 4.68679 4.74476 4.79814 4.87654 4.89164 4.91691 4.97847 5.05176 5.05744 5.07396 5.10598 5.17518 5.26182 5.30241 5.33462 5.41217 5.49194 5.56887 5.63143 5.69490 5.82380 5.90834 6.18062 6.33509 6.40361 6.53788 6.90289 7.42307 8.95049 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031907 B = 0.002994 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.347256 B = 9350.043344 C = 9599.229318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.385 6.385 4 C 0.082 3.918 5 H 0.099 0.901 6 C -0.176 4.176 7 C 0.087 3.913 8 H 0.097 0.903 9 N -0.668 5.668 10 C 0.080 3.920 11 C -0.074 4.074 12 H 0.055 0.945 13 C -0.126 4.126 14 C 0.033 3.967 15 C -0.528 4.528 16 H 0.060 0.940 17 C -0.003 4.003 18 N -0.936 5.936 19 Si 0.960 3.040 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.264 1.264 23 C -0.090 4.090 24 C -0.121 4.121 25 C -0.133 4.133 26 C -0.094 4.094 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.344 0.656 35 H 0.023 0.977 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.064 0.936 39 H 0.040 0.960 40 H -0.011 1.011 41 H -0.014 1.014 42 H 0.262 0.738 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.935 -14.977 -8.864 25.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.304 6.304 4 C 0.023 3.977 5 H 0.117 0.883 6 C -0.216 4.216 7 C -0.023 4.023 8 H 0.115 0.885 9 N -0.299 5.299 10 C -0.049 4.049 11 C -0.093 4.093 12 H 0.074 0.926 13 C -0.183 4.183 14 C -0.004 4.004 15 C -0.566 4.566 16 H 0.078 0.922 17 C -0.200 4.200 18 N -0.577 5.577 19 Si 0.785 3.215 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.188 1.188 23 C -0.091 4.091 24 C -0.158 4.158 25 C -0.170 4.170 26 C -0.132 4.132 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.165 0.835 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.008 0.992 41 H 0.005 0.995 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.099 0.901 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.696 -14.590 -9.424 25.519 hybrid contribution 0.849 0.199 1.317 1.580 sum -17.847 -14.391 -8.107 24.318 Atomic orbital electron populations 1.21749 0.93140 1.03169 1.02549 1.22680 0.96203 0.83418 1.00519 1.87934 1.20625 1.27297 1.94562 1.23302 0.81037 0.97653 0.95671 0.88301 1.24110 0.99030 1.00724 0.97702 1.22508 0.96491 0.88241 0.95096 0.88514 1.60334 1.03626 1.21401 1.44521 1.21846 0.90681 0.95879 0.96524 1.21001 0.95671 0.95119 0.97504 0.92632 1.21638 0.97982 1.01164 0.97516 1.18997 0.92005 0.95328 0.94087 1.21641 0.97376 0.95106 1.42463 0.92181 1.25948 0.95999 1.02227 0.95832 1.70102 1.03683 1.36273 1.47592 0.85517 0.77318 0.79873 0.78781 1.19855 1.20925 1.18847 1.22943 0.96555 0.95376 0.94269 1.22706 1.00931 0.97238 0.94968 1.22741 0.99410 0.96612 0.98252 1.22243 0.96833 0.96293 0.97790 0.89393 0.92597 0.92278 0.92574 0.93112 0.89828 0.90808 0.83520 0.95900 0.92489 0.93685 0.91732 0.94127 0.99232 0.99532 0.92967 0.91795 0.89317 0.91199 0.91337 0.90115 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 71.98 0.74 -1.10 16 2 C 0.05 0.71 6.50 71.98 0.47 1.18 16 3 O -0.39 -7.83 9.66 -148.98 -1.44 -9.27 16 4 C 0.08 1.58 4.19 30.88 0.13 1.71 16 5 H 0.10 1.61 7.87 -2.38 -0.02 1.59 16 6 C -0.18 -3.69 7.54 31.23 0.24 -3.46 16 7 C 0.09 2.06 4.06 45.21 0.18 2.25 16 8 H 0.10 2.31 7.87 -2.38 -0.02 2.29 16 9 N -0.67 -18.70 5.73 -490.08 -2.81 -21.51 16 10 C 0.08 2.73 4.99 86.30 0.43 3.16 16 11 C -0.07 -3.04 2.55 -10.79 -0.03 -3.07 16 12 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 13 C -0.13 -4.62 8.77 71.98 0.63 -3.99 16 14 C 0.03 1.77 4.45 29.85 0.13 1.90 16 15 C -0.53 -30.14 8.41 25.60 0.22 -29.93 16 16 H 0.06 3.31 7.05 -2.91 -0.02 3.29 16 17 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 18 N -0.94 -57.68 13.29 21.45 0.28 -57.39 16 19 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 22 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 23 C -0.09 -1.92 1.07 -52.31 -0.06 -1.98 16 24 C -0.12 -2.42 7.83 30.88 0.24 -2.18 16 25 C -0.13 -2.93 8.10 31.30 0.25 -2.68 16 26 C -0.09 -2.12 7.16 30.95 0.22 -1.90 16 27 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 1.88 7.82 -2.39 -0.02 1.87 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.34 9.28 6.35 -89.69 -0.57 8.71 16 35 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 2.05 8.13 -2.39 -0.02 2.03 16 37 H 0.04 1.80 6.95 -2.39 -0.02 1.78 16 38 H 0.06 1.94 6.68 -2.39 -0.02 1.92 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 40 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 41 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 42 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 43 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.08 1.78 7.84 -2.39 -0.02 1.76 16 48 H 0.06 1.52 7.49 -2.39 -0.02 1.50 16 Total: -1.00 -63.55 375.38 2.65 -60.90 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.32 Total: 20.10 kcal Atomic # 6 Polarization: -44.05 SS G_CDS: 4.26 Total: -39.79 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -2.52 Total: -78.91 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -1.44 Total: -9.27 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -63.55 2.65 -60.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602546188.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.787 kcal (2) G-P(sol) polarization free energy of solvation -63.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds