Wall clock time and date at job start Tue Mar 31 2020 06:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.46876 * 2 1 4 4 C 1.42894 * 114.00069 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.88616 * 18.65349 * 4 3 2 6 6 C 1.53953 * 113.74649 * 247.23005 * 4 3 2 7 7 C 1.53953 * 87.29448 * 270.24762 * 6 4 3 8 8 H 1.09002 * 113.66268 * 89.73775 * 7 6 4 9 9 N 1.46899 * 113.74540 * 220.78127 * 7 6 4 10 10 C 1.46896 * 111.00185 * 253.90564 * 9 7 6 11 11 C 1.53003 * 109.47418 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46925 * 54.99750 * 11 10 9 13 13 C 1.53002 * 109.46838 * 295.00497 * 11 10 9 14 14 C 1.52997 * 109.47280 * 175.00212 * 11 10 9 15 15 C 1.50701 * 109.46682 * 185.00157 * 14 11 10 16 16 H 1.07997 * 120.00523 * 359.97438 * 15 14 11 17 17 C 1.37885 * 119.99643 * 180.02562 * 15 14 11 18 18 N 1.31512 * 119.99585 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99903 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47175 * 60.00092 * 19 17 15 21 21 H 1.48502 * 109.46730 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47215 * 300.00078 * 19 17 15 23 23 C 1.52907 * 86.78237 * 335.26648 * 7 6 4 24 24 C 1.52907 * 121.13663 * 259.17829 * 23 7 6 25 25 C 1.53948 * 86.78136 * 209.37974 * 24 23 7 26 26 C 1.52910 * 121.13865 * 150.61789 * 23 7 6 27 27 H 1.08999 * 109.47585 * 300.00207 * 1 2 3 28 28 H 1.09005 * 109.46673 * 60.00528 * 1 2 3 29 29 H 1.08997 * 109.46755 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47585 * 239.99793 * 2 1 3 31 31 H 1.08998 * 109.46972 * 119.99188 * 2 1 3 32 32 H 1.08998 * 113.58135 * 155.64737 * 6 4 3 33 33 H 1.09004 * 113.58267 * 24.84951 * 6 4 3 34 34 H 1.00903 * 110.99775 * 129.95635 * 9 7 6 35 35 H 1.08998 * 109.47503 * 300.00502 * 10 9 7 36 36 H 1.09004 * 109.46998 * 60.00283 * 10 9 7 37 37 H 1.08994 * 109.46807 * 179.97438 * 13 11 10 38 38 H 1.09001 * 109.46752 * 299.99359 * 13 11 10 39 39 H 1.08998 * 109.47207 * 59.99772 * 13 11 10 40 40 H 1.08998 * 109.46933 * 305.00038 * 14 11 10 41 41 H 1.08999 * 109.47047 * 64.99758 * 14 11 10 42 42 H 0.97006 * 119.99511 * 180.02562 * 18 17 15 43 43 H 1.08991 * 113.66565 * 323.85437 * 24 23 7 44 44 H 1.09002 * 113.66061 * 94.91304 * 24 23 7 45 45 H 1.09003 * 113.58351 * 270.12580 * 25 24 23 46 46 H 1.09006 * 113.64746 * 139.34839 * 25 24 23 47 47 H 1.08999 * 113.66294 * 265.09021 * 26 23 7 48 48 H 1.09001 * 113.66126 * 36.14420 * 26 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4603 0.0006 5 1 3.9287 0.5452 -0.3203 6 6 4.0052 2.0531 1.3001 7 6 3.8601 3.4391 0.6458 8 1 2.8941 3.9100 0.8281 9 7 4.9922 4.3380 0.9071 10 6 4.6250 5.3791 1.8762 11 6 5.8265 6.2940 2.1218 12 1 6.1812 6.6912 1.1706 13 6 6.9473 5.4955 2.7906 14 6 5.4096 7.4498 3.0335 15 6 6.5572 8.4161 3.1761 16 1 7.4907 8.2248 2.6678 17 6 6.4158 9.5439 3.9566 18 7 5.2793 9.7765 4.5760 19 14 7.8385 10.7413 4.1340 20 1 8.2070 11.2738 2.7976 21 1 7.4337 11.8632 5.0189 22 1 9.0054 10.0394 4.7262 23 6 3.9471 2.7178 -0.6996 24 6 5.2477 2.6977 -1.5034 25 6 4.3667 2.6042 -2.7623 26 6 3.2497 3.2739 -1.9416 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 5.0396 1.7668 1.4901 33 1 3.3599 1.9105 2.1670 34 1 5.3350 4.7463 0.0504 35 1 3.7960 5.9667 1.4817 36 1 4.3254 4.9125 2.8147 37 1 7.8034 6.1471 2.9651 38 1 6.5927 5.0983 3.7417 39 1 7.2443 4.6721 2.1410 40 1 4.5530 7.9647 2.5987 41 1 5.1392 7.0593 4.0146 42 1 5.1796 10.5702 5.1248 43 1 5.8179 3.6241 -1.4362 44 1 5.8563 1.8104 -1.3285 45 1 4.1364 1.5808 -3.0585 46 1 4.7237 3.2143 -3.5921 47 1 2.2621 2.8471 -2.1168 48 1 3.2582 4.3625 -1.9975 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602546189.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:07 Heat of formation + Delta-G solvation = -23.015830 kcal Electronic energy + Delta-G solvation = -22681.371201 eV Core-core repulsion = 19543.964956 eV Total energy + Delta-G solvation = -3137.406245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.87540 -37.49022 -36.43776 -34.57102 -32.82371 -31.53890 -30.55097 -26.80639 -25.87969 -25.52481 -24.59833 -23.47368 -23.02350 -22.02549 -20.79331 -19.14168 -18.20885 -16.67305 -16.35453 -16.07901 -15.79466 -15.43414 -14.99646 -14.51723 -14.25799 -13.94754 -13.39962 -13.13504 -12.92760 -12.80934 -12.53161 -12.37817 -12.12241 -11.94058 -11.84417 -11.68655 -11.45960 -11.36573 -11.28769 -11.04346 -10.81600 -10.73184 -10.50623 -10.29549 -10.24789 -10.06993 -9.91676 -9.64233 -9.43615 -9.07170 -8.88850 -8.29042 -8.02029 -5.93911 -3.94945 3.29168 3.36655 3.40856 3.43427 4.34122 4.37208 4.49096 4.52615 4.66943 4.72686 4.80841 4.87330 4.90014 4.97185 5.09322 5.15080 5.32103 5.41667 5.43081 5.56758 5.62320 5.63747 5.70129 5.77272 5.82662 5.84184 5.89890 5.95988 5.98591 6.03145 6.19184 6.23474 6.28485 6.44033 6.51378 6.63387 6.74814 7.07757 7.12283 7.23311 7.26565 7.50551 7.72277 7.76672 7.90997 8.06769 8.50811 9.11379 9.68069 11.17645 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026959 B = 0.003073 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.355892 B = 9110.465920 C = 9569.062062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.363 6.363 4 C 0.089 3.911 5 H 0.072 0.928 6 C -0.140 4.140 7 C 0.081 3.919 8 H 0.073 0.927 9 N -0.673 5.673 10 C 0.064 3.936 11 C -0.082 4.082 12 H 0.052 0.948 13 C -0.121 4.121 14 C 0.027 3.973 15 C -0.512 4.512 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.106 4.106 24 C -0.103 4.103 25 C -0.142 4.142 26 C -0.125 4.125 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.335 0.665 35 H 0.023 0.977 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.039 0.961 39 H 0.041 0.959 40 H 0.012 0.988 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.823 -20.583 -12.791 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.282 6.282 4 C 0.030 3.970 5 H 0.090 0.910 6 C -0.179 4.179 7 C -0.030 4.030 8 H 0.091 0.909 9 N -0.304 5.304 10 C -0.065 4.065 11 C -0.101 4.101 12 H 0.070 0.930 13 C -0.179 4.179 14 C -0.010 4.010 15 C -0.551 4.551 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.107 4.107 24 C -0.140 4.140 25 C -0.180 4.180 26 C -0.162 4.162 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.155 0.845 35 H 0.041 0.959 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.030 0.970 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.759 -20.695 -12.190 24.699 hybrid contribution 0.226 1.127 -0.258 1.178 sum -5.533 -19.568 -12.448 23.843 Atomic orbital electron populations 1.21743 0.93785 1.02118 1.03228 1.22506 0.95505 0.83993 0.99897 1.87887 1.19755 1.25987 1.94540 1.22634 0.81247 0.96296 0.96832 0.91020 1.23535 1.01507 0.96250 0.96575 1.22695 0.93564 0.92777 0.93932 0.90914 1.60691 1.32414 1.21891 1.15399 1.22187 0.97466 0.91567 0.95283 1.21193 0.93743 0.95567 0.99580 0.92987 1.21574 0.98699 0.98521 0.99078 1.19113 0.96423 0.91382 0.94087 1.21211 0.99120 1.06074 1.28660 0.92649 1.25025 0.95638 0.98038 0.95880 1.69962 1.24485 1.27469 1.31804 0.86693 0.82843 0.80723 0.77942 1.20338 1.21393 1.20276 1.22986 0.97842 0.96338 0.93506 1.22504 0.94653 1.02787 0.94099 1.22863 0.97451 1.00741 0.96920 1.22642 0.98362 1.00201 0.95012 0.91737 0.91910 0.91216 0.93586 0.93387 0.88609 0.91343 0.84520 0.95901 0.91656 0.92904 0.94230 0.93974 0.96992 0.96602 0.93074 0.88957 0.91351 0.90696 0.91506 0.91000 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 2 C 0.06 0.49 6.50 37.16 0.24 0.73 16 3 O -0.36 -4.15 9.84 -35.23 -0.35 -4.50 16 4 C 0.09 0.95 4.16 -26.28 -0.11 0.85 16 5 H 0.07 0.67 7.87 -51.93 -0.41 0.27 16 6 C -0.14 -1.70 7.72 -25.75 -0.20 -1.90 16 7 C 0.08 1.08 3.96 -67.26 -0.27 0.81 16 8 H 0.07 1.10 7.88 -51.93 -0.41 0.69 16 9 N -0.67 -9.95 5.76 -106.25 -0.61 -10.56 16 10 C 0.06 1.14 4.93 -3.82 -0.02 1.12 16 11 C -0.08 -1.71 2.48 -90.62 -0.22 -1.93 16 12 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 13 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 14 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 15 C -0.51 -14.58 8.41 -34.44 -0.29 -14.87 16 16 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 19 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.11 -1.17 0.91 -154.71 -0.14 -1.31 16 24 C -0.10 -1.01 7.37 -26.28 -0.19 -1.21 16 25 C -0.14 -1.28 8.08 -25.75 -0.21 -1.49 16 26 C -0.12 -1.32 7.71 -26.29 -0.20 -1.52 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.34 4.74 6.96 -39.29 -0.27 4.47 16 35 H 0.02 0.42 8.13 -51.93 -0.42 0.00 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.09 0.95 6.71 -51.93 -0.35 0.60 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.79 7.83 -51.93 -0.41 0.38 16 48 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -30.11 376.79 -9.99 -40.09 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -9.30 Total: 0.43 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -1.12 Total: -21.43 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.12 Total: -37.24 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.35 Total: -4.50 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.11 -9.99 -40.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602546189.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.077 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds