Wall clock time and date at job start Tue Mar 31 2020 06:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47239 * 2 1 4 4 C 1.53002 * 109.47327 * 239.99813 * 2 1 3 5 5 C 1.50696 * 109.46919 * 64.99798 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 89.99934 * 9 7 5 11 11 H 1.48499 * 109.47026 * 209.99782 * 9 7 5 12 12 H 1.48496 * 109.47474 * 329.99818 * 9 7 5 13 13 C 1.52999 * 109.47107 * 119.99444 * 2 1 3 14 14 N 1.46903 * 109.47368 * 295.00343 * 13 2 1 15 15 C 1.46898 * 111.00043 * 179.97438 * 14 13 2 16 16 H 1.09004 * 112.89788 * 23.60227 * 15 14 13 17 17 C 1.53557 * 113.67709 * 252.08809 * 15 14 13 18 18 H 1.08992 * 112.54738 * 333.44987 * 17 15 14 19 19 C 1.51476 * 114.25421 * 101.57045 * 17 15 14 20 20 C 1.52778 * 110.66502 * 63.75654 * 19 17 15 21 21 C 1.53181 * 108.71161 * 54.29309 * 20 19 17 22 22 O 1.42425 * 108.90273 * 294.52813 * 21 20 19 23 23 C 1.41866 * 116.24898 * 58.19496 * 22 21 20 24 24 H 1.09009 * 112.41506 * 93.44631 * 23 22 21 25 25 C 1.53851 * 113.67870 * 154.99792 * 15 14 13 26 26 C 1.53000 * 113.64268 * 254.27719 * 25 15 14 27 27 C 1.53000 * 113.63884 * 25.17697 * 25 15 14 28 28 H 1.08997 * 109.46686 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47004 * 300.00313 * 1 2 3 30 30 H 1.08997 * 109.47105 * 60.00166 * 1 2 3 31 31 H 1.09000 * 109.46497 * 305.00064 * 4 2 1 32 32 H 1.08999 * 109.46623 * 185.00128 * 4 2 1 33 33 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 34 34 H 1.09008 * 109.47057 * 55.00147 * 13 2 1 35 35 H 1.09005 * 109.47222 * 174.99830 * 13 2 1 36 36 H 1.00898 * 110.99650 * 303.95303 * 14 13 2 37 37 H 1.08999 * 109.18641 * 303.52197 * 19 17 15 38 38 H 1.09009 * 109.39505 * 184.12064 * 19 17 15 39 39 H 1.08997 * 109.60346 * 294.51862 * 20 19 17 40 40 H 1.09008 * 109.59686 * 174.05477 * 20 19 17 41 41 H 1.08991 * 109.56586 * 174.69732 * 21 20 19 42 42 H 1.09004 * 109.65669 * 54.40437 * 21 20 19 43 43 H 1.08994 * 109.47193 * 59.99544 * 26 25 15 44 44 H 1.09000 * 109.47194 * 180.02562 * 26 25 15 45 45 H 1.09005 * 109.47002 * 300.00018 * 26 25 15 46 46 H 1.08999 * 109.47255 * 60.00174 * 27 25 15 47 47 H 1.09001 * 109.47090 * 180.02562 * 27 25 15 48 48 H 1.09002 * 109.47241 * 299.99698 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9740 -2.3757 7 6 1.9925 -0.4024 -3.7283 8 7 2.6705 -1.5225 -3.8513 9 14 1.4976 0.5619 -5.2497 10 1 2.5628 1.5414 -5.5830 11 1 1.3103 -0.3724 -6.3887 12 1 0.2265 1.2832 -4.9870 13 6 2.0400 -0.7211 1.2493 14 7 1.6514 0.0376 2.4457 15 6 2.1247 -0.6269 3.6673 16 1 2.9796 -1.2798 3.4909 17 6 1.0037 -1.2830 4.4863 18 1 0.0375 -0.8028 4.3321 19 6 0.9041 -2.7846 4.3137 20 6 2.1680 -3.4715 4.8282 21 6 2.4135 -3.0297 6.2742 22 8 2.7042 -1.6355 6.2877 23 6 1.7125 -0.7824 5.7387 24 1 1.0254 -0.4032 6.4952 25 6 2.3129 0.3295 4.8576 26 6 3.7784 0.6373 5.1717 27 6 1.4453 1.5872 4.7772 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -1.7198 -1.2950 32 1 3.1264 -0.7995 -1.2054 33 1 2.9272 -2.0234 -3.0613 34 1 1.6054 -1.7197 1.2953 35 1 3.1264 -0.7994 1.2057 36 1 1.9881 0.9874 2.3966 37 1 0.7753 -3.0158 3.2563 38 1 0.0427 -3.1564 4.8687 39 1 3.0179 -3.1847 4.2090 40 1 2.0362 -4.5530 4.7938 41 1 3.2574 -3.5826 6.6865 42 1 1.5231 -3.2227 6.8727 43 1 4.2461 1.1023 4.3040 44 1 3.8327 1.3169 6.0222 45 1 4.3004 -0.2887 5.4131 46 1 0.3935 1.3020 4.7526 47 1 1.6319 2.2137 5.6495 48 1 1.6926 2.1420 3.8722 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602562648.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:00 Heat of formation + Delta-G solvation = -55.069816 kcal Electronic energy + Delta-G solvation = -23515.099058 eV Core-core repulsion = 20376.302848 eV Total energy + Delta-G solvation = -3138.796211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.31279 -37.27171 -35.96529 -33.95859 -33.20118 -31.33981 -30.36344 -27.57035 -26.54687 -26.17671 -25.26841 -23.79998 -23.02575 -22.06089 -19.73354 -19.42060 -18.15222 -16.82226 -16.61299 -15.99018 -15.60712 -15.22751 -14.80357 -14.44153 -14.12067 -13.79826 -13.67548 -13.32369 -13.25819 -13.01567 -12.80911 -12.43200 -12.17659 -11.87445 -11.73019 -11.69111 -11.39114 -11.31349 -11.26056 -11.14667 -10.97631 -10.70997 -10.62561 -10.36708 -10.19671 -10.08318 -9.87203 -9.77919 -9.47514 -9.26260 -8.43845 -8.27700 -8.11271 -6.30737 -3.98624 3.45560 3.45808 3.49393 3.65001 4.25108 4.35955 4.43460 4.54809 4.59722 4.74832 4.77617 4.90575 5.02837 5.15702 5.27607 5.36807 5.43052 5.45646 5.54304 5.57016 5.61284 5.63280 5.70135 5.77122 5.84282 5.86606 5.90164 5.96132 6.00637 6.03886 6.09191 6.16482 6.32482 6.33100 6.43959 6.48726 6.61269 6.91920 7.08472 7.13996 7.22468 7.37151 7.43990 7.58909 7.66604 8.29280 8.52745 8.94598 9.72866 11.09681 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026839 B = 0.003579 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.008788 B = 7822.162977 C = 8238.056035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.075 4.075 3 H 0.053 0.947 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 1.070 2.930 10 H -0.289 1.289 11 H -0.285 1.285 12 H -0.289 1.289 13 C 0.064 3.936 14 N -0.672 5.672 15 C 0.077 3.923 16 H 0.073 0.927 17 C -0.120 4.120 18 H 0.103 0.897 19 C -0.111 4.111 20 C -0.158 4.158 21 C 0.066 3.934 22 O -0.366 6.366 23 C 0.082 3.918 24 H 0.070 0.930 25 C -0.089 4.089 26 C -0.133 4.133 27 C -0.121 4.121 28 H 0.037 0.963 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.006 0.994 32 H 0.002 0.998 33 H 0.268 0.732 34 H 0.063 0.937 35 H 0.021 0.979 36 H 0.338 0.662 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 0.355 22.130 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.023 4.023 5 C -0.631 4.631 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.898 3.102 10 H -0.216 1.216 11 H -0.211 1.211 12 H -0.215 1.215 13 C -0.065 4.065 14 N -0.303 5.303 15 C -0.033 4.033 16 H 0.091 0.909 17 C -0.139 4.139 18 H 0.121 0.879 19 C -0.148 4.148 20 C -0.196 4.196 21 C -0.010 4.010 22 O -0.285 6.285 23 C 0.024 3.976 24 H 0.088 0.912 25 C -0.089 4.089 26 C -0.190 4.190 27 C -0.178 4.178 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.024 0.976 32 H 0.020 0.980 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.158 0.842 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.234 0.163 20.559 20.681 hybrid contribution 0.646 -0.078 1.434 1.575 sum -1.588 0.085 21.993 22.050 Atomic orbital electron populations 1.21561 0.95529 1.00442 1.00238 1.21055 0.96100 0.98766 0.93479 0.92804 1.19245 0.95056 0.95592 0.92425 1.22062 1.38547 1.10258 0.92268 0.93193 1.25822 0.94771 0.97128 1.01374 1.70748 1.36422 1.14699 1.33480 0.83536 0.75970 0.75244 0.75417 1.21573 1.21079 1.21497 1.22193 0.96836 0.97688 0.89762 1.60671 1.63046 1.05565 1.01027 1.23111 0.95717 0.95593 0.88919 0.90898 1.22532 1.00133 0.95836 0.95429 0.87898 1.21025 0.97252 0.94422 1.02114 1.22162 0.99282 1.00701 0.97459 1.22476 1.01011 0.81731 0.95790 1.87406 1.43528 1.16371 1.81167 1.22609 0.90257 0.91321 0.93462 0.91179 1.22345 0.96573 0.94420 0.95610 1.21599 0.94557 1.02017 1.00807 1.21458 0.99335 0.95252 1.01754 0.94372 0.93797 0.92741 0.97571 0.97972 0.92190 0.91828 0.96069 0.84186 0.90983 0.92078 0.90985 0.90886 0.88992 0.93395 0.93031 0.92757 0.91431 0.91833 0.92627 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.08 -1.55 2.48 -90.62 -0.22 -1.78 16 3 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.01 0.37 3.76 -27.88 -0.10 0.26 16 5 C -0.59 -16.95 8.41 -34.44 -0.29 -17.24 16 6 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 7 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 8 N -0.92 -28.52 13.65 55.43 0.76 -27.76 16 9 Si 1.07 25.73 29.90 -169.99 -5.08 20.64 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.06 1.11 4.92 -3.82 -0.02 1.09 16 14 N -0.67 -9.54 5.53 -105.94 -0.59 -10.13 16 15 C 0.08 0.97 2.99 -66.98 -0.20 0.76 16 16 H 0.07 1.03 6.52 -51.93 -0.34 0.69 16 17 C -0.12 -1.36 3.40 -91.43 -0.31 -1.67 16 18 H 0.10 1.21 7.54 -51.93 -0.39 0.82 16 19 C -0.11 -1.19 5.71 -27.62 -0.16 -1.35 16 20 C -0.16 -1.55 5.90 -26.75 -0.16 -1.71 16 21 C 0.07 0.61 6.86 37.25 0.26 0.87 16 22 O -0.37 -4.15 8.82 -35.22 -0.31 -4.46 16 23 C 0.08 0.89 4.19 -26.50 -0.11 0.78 16 24 H 0.07 0.72 8.09 -51.92 -0.42 0.30 16 25 C -0.09 -0.96 1.27 -153.52 -0.20 -1.16 16 26 C -0.13 -1.44 9.00 37.16 0.33 -1.10 16 27 C -0.12 -1.19 8.45 37.16 0.31 -0.87 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 30 H 0.05 1.16 6.95 -51.93 -0.36 0.80 16 31 H 0.01 0.16 8.00 -51.93 -0.42 -0.25 16 32 H 0.00 0.06 8.01 -51.93 -0.42 -0.36 16 33 H 0.27 8.31 7.22 -40.82 -0.29 8.02 16 34 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 35 H 0.02 0.38 8.13 -51.93 -0.42 -0.04 16 36 H 0.34 4.67 6.93 -39.29 -0.27 4.40 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.07 0.81 6.96 -51.93 -0.36 0.44 16 40 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.79 6.90 -51.93 -0.36 0.43 16 46 H 0.06 0.63 7.27 -51.93 -0.38 0.25 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.67 6.72 -51.93 -0.35 0.32 16 LS Contribution 360.53 15.07 5.43 5.43 Total: -1.00 -30.29 360.53 -9.42 -39.71 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -9.00 Total: 1.46 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -0.63 Total: -24.90 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.17 Total: -37.89 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.31 Total: -4.46 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.29 -9.42 -39.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602562648.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.355 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds