Wall clock time and date at job start Tue Mar 31 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 C 1.50701 * 109.47248 * 64.99284 * 4 2 1 6 6 H 1.07997 * 120.00120 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99825 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00260 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99910 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46938 * 60.00454 * 9 7 5 11 11 H 1.48501 * 109.47358 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47398 * 300.00402 * 9 7 5 13 13 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 14 14 N 1.46899 * 109.47254 * 295.00236 * 13 2 1 15 15 C 1.46904 * 111.00029 * 179.97438 * 14 13 2 16 16 H 1.08999 * 113.17521 * 22.40695 * 15 14 13 17 17 C 1.50568 * 114.06072 * 249.57724 * 15 14 13 18 18 H 1.08997 * 113.16620 * 324.23698 * 17 15 14 19 19 C 1.52040 * 123.96078 * 106.60819 * 17 15 14 20 20 C 1.54388 * 105.10407 * 156.90530 * 19 17 15 21 21 C 1.52403 * 112.06676 * 306.17167 * 20 19 17 22 22 O 1.44150 * 112.91535 * 50.02321 * 21 20 19 23 23 C 1.40850 * 109.95383 * 303.35638 * 22 21 20 24 24 H 1.09001 * 111.07281 * 305.86661 * 23 22 21 25 25 C 1.50017 * 127.42343 * 162.74435 * 23 22 21 26 26 C 1.52996 * 114.06702 * 104.84368 * 25 23 22 27 27 C 1.53006 * 114.21583 * 332.50096 * 25 23 22 28 28 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 29 29 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 30 30 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 32 32 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 33 33 H 0.97000 * 120.00592 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47153 * 175.00232 * 13 2 1 35 35 H 1.09001 * 109.46832 * 55.00423 * 13 2 1 36 36 H 1.00902 * 111.00582 * 303.95797 * 14 13 2 37 37 H 1.09004 * 110.30418 * 275.80122 * 19 17 15 38 38 H 1.09003 * 110.30976 * 38.00965 * 19 17 15 39 39 H 1.09002 * 108.96515 * 66.83945 * 20 19 17 40 40 H 1.09007 * 108.96265 * 185.50049 * 20 19 17 41 41 H 1.09001 * 108.79176 * 170.91135 * 21 20 19 42 42 H 1.08996 * 108.79189 * 289.13693 * 21 20 19 43 43 H 1.09003 * 109.47057 * 154.54589 * 26 25 23 44 44 H 1.08994 * 109.47182 * 274.55527 * 26 25 23 45 45 H 1.09001 * 109.47094 * 34.55427 * 26 25 23 46 46 H 1.08999 * 109.47136 * 325.37209 * 27 25 23 47 47 H 1.08992 * 109.46970 * 85.37613 * 27 25 23 48 48 H 1.09003 * 109.46942 * 205.37548 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 2.6765 -1.5186 -3.8511 9 14 1.4996 0.5633 -5.2496 10 1 2.0917 1.9237 -5.1865 11 1 1.9945 -0.1367 -6.4621 12 1 0.0196 0.6699 -5.3096 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0375 2.4456 15 6 2.1248 -0.6270 3.6672 16 1 2.9666 -1.2970 3.4924 17 6 1.0262 -1.2219 4.5076 18 1 0.1126 -0.6273 4.5024 19 6 0.7517 -2.7134 4.6148 20 6 0.0059 -2.8900 5.9550 21 6 0.7728 -2.2790 7.1218 22 8 1.1956 -0.9245 6.8677 23 6 1.9777 -0.8766 5.6973 24 1 2.8089 -1.5796 5.7523 25 6 2.3183 0.3325 4.8772 26 6 3.7552 0.8253 5.0592 27 6 1.2820 1.4556 4.9547 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 3.1264 -0.7993 -1.2056 32 1 1.6055 -1.7198 -1.2951 33 1 2.9239 -1.8416 -4.7317 34 1 3.1264 -0.7993 1.2056 35 1 1.6054 -1.7197 1.2951 36 1 1.9880 0.9874 2.3967 37 1 0.1245 -3.0431 3.7865 38 1 1.6885 -3.2706 4.6269 39 1 -0.9704 -2.4106 5.8830 40 1 -0.1369 -3.9541 6.1434 41 1 0.1339 -2.2877 8.0049 42 1 1.6529 -2.8900 7.3219 43 1 4.0695 1.3665 4.1667 44 1 3.8053 1.4883 5.9228 45 1 4.4146 -0.0280 5.2175 46 1 0.2848 1.0244 5.0430 47 1 1.4866 2.0792 5.8248 48 1 1.3365 2.0631 4.0513 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602562653.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:05 Heat of formation + Delta-G solvation = -27.699728 kcal Electronic energy + Delta-G solvation = -23242.389677 eV Core-core repulsion = 20104.780322 eV Total energy + Delta-G solvation = -3137.609354 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.56375 -37.51712 -35.96728 -33.68117 -33.04328 -31.41870 -30.29423 -27.65948 -26.93512 -26.38780 -25.20329 -23.60854 -22.52797 -21.37697 -20.41261 -19.43116 -18.56086 -16.52549 -16.34565 -15.92163 -15.21762 -15.04894 -14.77102 -14.55427 -14.25796 -14.04837 -13.65543 -13.36188 -13.06079 -12.82551 -12.42117 -12.27509 -12.16310 -12.05203 -11.94719 -11.70191 -11.47530 -11.36260 -11.16273 -10.91382 -10.83909 -10.78540 -10.61654 -10.41260 -10.26978 -10.24105 -10.07860 -9.67455 -9.17632 -9.03600 -8.86408 -8.31189 -8.07071 -5.96123 -3.97209 3.34414 3.35364 3.39636 3.42264 4.14409 4.34726 4.46522 4.51073 4.69190 4.72374 4.85173 4.89586 4.98962 5.15657 5.24750 5.33855 5.38730 5.39632 5.46230 5.58742 5.64038 5.68023 5.73536 5.77075 5.83335 5.85560 5.91586 5.93566 5.97682 6.02138 6.18812 6.21266 6.33963 6.40712 6.48671 6.60104 6.72076 7.01010 7.05652 7.21044 7.23438 7.43670 7.67550 7.72171 7.87651 8.04217 8.48398 9.09067 9.66037 11.15394 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028939 B = 0.003336 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.323544 B = 8391.344773 C = 8762.240660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.052 0.948 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.668 5.668 15 C 0.083 3.917 16 H 0.075 0.925 17 C -0.141 4.141 18 H 0.109 0.891 19 C -0.109 4.109 20 C -0.151 4.151 21 C 0.063 3.937 22 O -0.360 6.360 23 C 0.047 3.953 24 H 0.072 0.928 25 C -0.060 4.060 26 C -0.141 4.141 27 C -0.119 4.119 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.038 0.962 31 H 0.012 0.988 32 H 0.015 0.985 33 H 0.260 0.740 34 H 0.023 0.977 35 H 0.065 0.935 36 H 0.338 0.662 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.603 0.032 22.110 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.299 5.299 15 C -0.028 4.028 16 H 0.093 0.907 17 C -0.160 4.160 18 H 0.127 0.873 19 C -0.146 4.146 20 C -0.189 4.189 21 C -0.014 4.014 22 O -0.278 6.278 23 C -0.012 4.012 24 H 0.090 0.910 25 C -0.060 4.060 26 C -0.198 4.198 27 C -0.176 4.176 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.157 0.843 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.208 -0.217 22.137 22.248 hybrid contribution 0.833 0.209 -1.125 1.415 sum -1.375 -0.008 21.012 21.057 Atomic orbital electron populations 1.21575 0.95733 1.00502 1.00079 1.21193 0.95986 0.98851 0.94065 0.92904 1.19110 0.95840 0.95549 0.90465 1.21210 1.34603 1.08280 0.91019 0.92628 1.25018 0.95343 0.95098 0.99077 1.69953 1.39083 1.21249 1.23455 0.86695 0.78914 0.80104 0.82502 1.20316 1.21394 1.20265 1.22195 0.96974 0.97768 0.89506 1.60658 1.62859 1.05513 1.00854 1.22681 0.95859 0.95567 0.88667 0.90691 1.23456 0.99213 0.96234 0.97101 0.87279 1.21556 1.00360 0.96086 0.96631 1.22125 1.00235 1.01096 0.95439 1.22506 0.98179 0.83158 0.97536 1.87907 1.68536 1.26956 1.44428 1.23252 0.94553 0.98885 0.84483 0.91039 1.21931 0.96185 0.94108 0.93821 1.21797 0.94612 1.01323 1.02058 1.21475 0.97946 0.96588 1.01573 0.93917 0.92892 0.94258 0.97006 0.96628 0.93065 0.95857 0.91643 0.84261 0.91159 0.92034 0.91300 0.91028 0.89205 0.93586 0.92003 0.92206 0.92581 0.91486 0.92641 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.08 -1.67 2.48 -90.62 -0.22 -1.89 16 3 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 4 C 0.03 0.72 4.45 -27.89 -0.12 0.59 16 5 C -0.51 -14.42 8.41 -34.44 -0.29 -14.71 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.06 1.10 4.92 -3.83 -0.02 1.08 16 14 N -0.67 -9.37 5.58 -110.44 -0.62 -9.99 16 15 C 0.08 1.01 3.39 -71.17 -0.24 0.77 16 16 H 0.08 0.95 7.84 -51.93 -0.41 0.54 16 17 C -0.14 -1.65 3.02 -93.70 -0.28 -1.93 16 18 H 0.11 1.42 6.23 -51.93 -0.32 1.10 16 19 C -0.11 -1.16 6.20 -26.49 -0.16 -1.33 16 20 C -0.15 -1.35 5.95 -26.31 -0.16 -1.51 16 21 C 0.06 0.57 6.67 36.85 0.25 0.81 16 22 O -0.36 -4.22 10.93 -34.61 -0.38 -4.60 16 23 C 0.05 0.52 3.08 -30.14 -0.09 0.43 16 24 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 25 C -0.06 -0.64 1.28 -157.68 -0.20 -0.84 16 26 C -0.14 -1.36 9.30 37.16 0.35 -1.01 16 27 C -0.12 -1.27 8.61 37.16 0.32 -0.95 16 28 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 29 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 30 H 0.04 0.77 8.14 -51.92 -0.42 0.34 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.34 4.55 7.54 -39.29 -0.30 4.26 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.63 8.03 -51.93 -0.42 0.22 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.38 8.12 -51.93 -0.42 -0.04 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.52 7.91 -51.93 -0.41 0.11 16 46 H 0.07 0.77 6.20 -51.93 -0.32 0.45 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.67 7.12 -51.93 -0.37 0.31 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -29.67 365.29 -9.56 -39.22 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -9.13 Total: 0.49 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -0.65 Total: -21.03 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.12 Total: -36.36 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.38 Total: -4.60 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.67 -9.56 -39.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602562653.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.525 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds