Wall clock time and date at job start Tue Mar 31 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.50699 * 109.47337 * 64.99823 * 4 2 1 6 6 H 1.08000 * 120.00234 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00226 * 180.02562 * 5 4 2 8 8 N 1.31505 * 119.99493 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99901 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47444 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47390 * 120.00072 * 9 7 5 12 12 H 1.48511 * 109.46724 * 239.99360 * 9 7 5 13 13 C 1.52997 * 109.47164 * 120.00262 * 2 1 3 14 14 N 1.46895 * 109.47089 * 294.99991 * 13 2 1 15 15 C 1.46899 * 111.00239 * 180.02562 * 14 13 2 16 16 H 1.09004 * 113.17449 * 25.33469 * 15 14 13 17 17 C 1.50574 * 114.06130 * 252.73376 * 15 14 13 18 18 H 1.09007 * 113.16142 * 168.09965 * 17 15 14 19 19 C 1.51848 * 124.09472 * 25.29693 * 17 15 14 20 20 C 1.54387 * 105.22302 * 203.40823 * 19 17 15 21 21 C 1.52403 * 112.06968 * 53.98416 * 20 19 17 22 22 O 1.44161 * 112.90813 * 309.96824 * 21 20 19 23 23 C 1.40855 * 109.95200 * 56.65019 * 22 21 20 24 24 H 1.09004 * 111.47669 * 53.35977 * 23 22 21 25 25 C 1.50004 * 127.43283 * 197.24378 * 23 22 21 26 26 C 1.53000 * 114.06767 * 27.51621 * 25 23 22 27 27 C 1.53006 * 114.21635 * 255.17559 * 25 23 22 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 31 31 H 1.09004 * 109.47346 * 184.99897 * 4 2 1 32 32 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 33 33 H 0.97006 * 120.00132 * 180.02562 * 8 7 5 34 34 H 1.08994 * 109.47065 * 55.00225 * 13 2 1 35 35 H 1.09000 * 109.46818 * 175.00170 * 13 2 1 36 36 H 1.00905 * 111.00235 * 303.95635 * 14 13 2 37 37 H 1.09004 * 110.12301 * 84.53858 * 19 17 15 38 38 H 1.09003 * 110.37722 * 322.40930 * 19 17 15 39 39 H 1.08994 * 108.96493 * 293.31315 * 20 19 17 40 40 H 1.09007 * 108.89086 * 174.59720 * 20 19 17 41 41 H 1.08998 * 108.79514 * 189.09161 * 21 20 19 42 42 H 1.08998 * 108.70948 * 70.79603 * 21 20 19 43 43 H 1.09000 * 109.47071 * 154.55264 * 26 25 23 44 44 H 1.09000 * 109.46781 * 274.55365 * 26 25 23 45 45 H 1.09002 * 109.46472 * 34.55117 * 26 25 23 46 46 H 1.08998 * 109.46853 * 325.37286 * 27 25 23 47 47 H 1.08993 * 109.47193 * 85.37700 * 27 25 23 48 48 H 1.08999 * 109.46517 * 205.37439 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9924 -0.4020 -3.7284 8 7 2.6755 -1.5190 -3.8512 9 14 1.4988 0.5631 -5.2496 10 1 0.7423 1.7747 -4.8433 11 1 2.7170 0.9670 -5.9965 12 1 0.6441 -0.2855 -6.1185 13 6 2.0401 -0.7213 1.2492 14 7 1.6515 0.0373 2.4456 15 6 2.1258 -0.6266 3.6671 16 1 2.9996 -1.2568 3.5011 17 6 1.0362 -1.2868 4.4697 18 1 1.4177 -1.9433 5.2518 19 6 -0.2764 -1.7752 3.8829 20 6 -1.2651 -1.8026 5.0683 21 6 -1.3331 -0.4611 5.7884 22 8 -0.0326 0.0589 6.1301 23 6 0.7595 0.1721 4.9709 24 1 0.2531 0.7477 4.1961 25 6 2.2504 0.3198 4.8963 26 6 2.9983 -0.2929 6.0821 27 6 2.7245 1.7328 4.5503 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.1264 -0.7994 -1.2057 32 1 1.6055 -1.7197 -1.2952 33 1 2.9229 -1.8420 -4.7319 34 1 1.6055 -1.7198 1.2950 35 1 3.1264 -0.7994 1.2055 36 1 1.9882 0.9872 2.3966 37 1 -0.1530 -2.7764 3.4699 38 1 -0.6273 -1.0876 3.1133 39 1 -0.9485 -2.5688 5.7759 40 1 -2.2575 -2.0545 4.6944 41 1 -1.9140 -0.5824 6.7026 42 1 -1.8400 0.2566 5.1434 43 1 4.0106 -0.5566 5.7762 44 1 3.0416 0.4299 6.8969 45 1 2.4752 -1.1883 6.4180 46 1 2.0182 2.1941 3.8601 47 1 2.7850 2.3289 5.4607 48 1 3.7082 1.6817 4.0834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602562655.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:08 Heat of formation + Delta-G solvation = -23.407118 kcal Electronic energy + Delta-G solvation = -23545.446662 eV Core-core repulsion = 20408.023449 eV Total energy + Delta-G solvation = -3137.423213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.55755 -37.42151 -35.96660 -33.57860 -32.99519 -31.45091 -30.17122 -27.66485 -26.93962 -26.31232 -24.90886 -23.89569 -22.47467 -21.76086 -20.10723 -19.33133 -18.39726 -16.51455 -16.20054 -16.01384 -15.43534 -14.91687 -14.68973 -14.43189 -14.15563 -13.95224 -13.74847 -13.22474 -13.11279 -12.66253 -12.39411 -12.34169 -12.19179 -12.13869 -11.92654 -11.58702 -11.55519 -11.39997 -11.07032 -10.92090 -10.82405 -10.75226 -10.51620 -10.31896 -10.26107 -10.14040 -10.05945 -9.70421 -9.15421 -8.97706 -8.83904 -8.33403 -8.10788 -5.97927 -3.98936 3.31678 3.39421 3.43346 3.49539 4.04140 4.38105 4.48344 4.52542 4.74768 4.86072 4.94384 4.98366 5.12629 5.24131 5.38110 5.38354 5.44869 5.54426 5.56593 5.59840 5.69762 5.70152 5.79846 5.84042 5.85295 5.89081 5.92930 5.97156 6.01275 6.08222 6.15214 6.25862 6.37504 6.42707 6.51544 6.57196 6.66807 7.01181 7.16414 7.17331 7.19996 7.36570 7.61731 7.69926 7.85273 8.02441 8.46393 9.07747 9.64564 11.13649 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.003640 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.594850 B = 7691.163743 C = 8112.179654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.066 3.934 14 N -0.667 5.667 15 C 0.084 3.916 16 H 0.062 0.938 17 C -0.155 4.155 18 H 0.094 0.906 19 C -0.099 4.099 20 C -0.152 4.152 21 C 0.065 3.935 22 O -0.368 6.368 23 C 0.059 3.941 24 H 0.093 0.907 25 C -0.063 4.063 26 C -0.125 4.125 27 C -0.144 4.144 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.016 0.984 33 H 0.259 0.741 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.341 0.659 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.513 1.878 20.640 21.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.062 4.062 14 N -0.299 5.299 15 C -0.027 4.027 16 H 0.080 0.920 17 C -0.175 4.175 18 H 0.112 0.888 19 C -0.136 4.136 20 C -0.190 4.190 21 C -0.011 4.011 22 O -0.287 6.287 23 C 0.001 3.999 24 H 0.111 0.889 25 C -0.064 4.064 26 C -0.183 4.183 27 C -0.201 4.201 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.161 0.839 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.028 1.539 20.731 21.174 hybrid contribution 0.625 0.417 -1.241 1.451 sum -3.403 1.956 19.489 19.881 Atomic orbital electron populations 1.21583 0.95768 1.00514 1.00026 1.21195 0.95943 0.98871 0.94052 0.92897 1.19118 0.95898 0.95568 0.90434 1.21273 1.34487 1.08266 0.90976 0.92538 1.25019 0.95351 0.95083 0.99100 1.69975 1.39168 1.21266 1.23252 0.86585 0.78243 0.80148 0.83323 1.19752 1.21122 1.21095 1.22191 0.97203 0.97749 0.89064 1.60512 1.62972 1.05780 1.00643 1.22199 0.95996 0.95390 0.89075 0.92010 1.23356 0.96187 0.98164 0.99758 0.88772 1.21365 0.93627 1.01764 0.96857 1.22138 1.00492 0.97923 0.98400 1.22464 0.84424 0.94410 0.99840 1.87859 1.25239 1.84377 1.31241 1.23565 0.92305 0.97040 0.86947 0.88917 1.21963 0.92685 0.95858 0.95856 1.21588 0.99516 1.01026 0.96146 1.21771 1.01425 0.95063 1.01860 0.94173 0.94089 0.92826 0.96956 0.96581 0.93167 0.91481 0.95643 0.83891 0.92273 0.89943 0.91976 0.91104 0.89555 0.93351 0.92400 0.92062 0.91703 0.91663 0.92154 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 8.89 37.16 0.33 -1.97 16 2 C -0.08 -1.62 2.48 -90.62 -0.22 -1.85 16 3 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.03 0.69 4.45 -27.89 -0.12 0.57 16 5 C -0.51 -14.24 8.41 -34.44 -0.29 -14.53 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.94 13.28 55.43 0.74 -26.20 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.07 1.11 4.93 -3.83 -0.02 1.09 16 14 N -0.67 -9.08 4.47 -110.45 -0.49 -9.58 16 15 C 0.08 1.03 3.84 -71.18 -0.27 0.76 16 16 H 0.06 0.80 7.90 -51.93 -0.41 0.39 16 17 C -0.16 -1.85 3.19 -93.05 -0.30 -2.14 16 18 H 0.09 1.11 6.23 -51.92 -0.32 0.78 16 19 C -0.10 -1.18 5.98 -26.59 -0.16 -1.34 16 20 C -0.15 -1.52 5.95 -26.31 -0.16 -1.68 16 21 C 0.07 0.67 6.67 36.85 0.25 0.91 16 22 O -0.37 -4.61 10.93 -34.62 -0.38 -4.99 16 23 C 0.06 0.71 3.06 -29.86 -0.09 0.62 16 24 H 0.09 1.21 6.90 -51.93 -0.36 0.86 16 25 C -0.06 -0.68 1.45 -157.23 -0.23 -0.91 16 26 C -0.13 -1.23 9.02 37.16 0.34 -0.89 16 27 C -0.14 -1.43 8.44 37.16 0.31 -1.12 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.68 7.75 -51.93 -0.40 0.28 16 30 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.03 0.44 8.13 -51.93 -0.42 0.01 16 36 H 0.34 4.46 6.47 -39.29 -0.25 4.21 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.11 7.68 -51.93 -0.40 0.71 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.65 6.19 -51.93 -0.32 0.33 16 46 H 0.06 0.66 6.76 -51.93 -0.35 0.31 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -29.27 362.04 -9.46 -38.73 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -9.03 Total: 0.95 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -0.73 Total: -21.00 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.24 Total: -35.78 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.38 Total: -4.99 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.27 -9.46 -38.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602562655.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.322 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds