Wall clock time and date at job start Tue Mar 31 2020 06:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 H 1.07991 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00104 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00175 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47556 * 90.00047 * 9 7 5 11 11 H 1.48504 * 109.47118 * 210.00306 * 9 7 5 12 12 H 1.48508 * 109.46863 * 330.00026 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 N 1.46904 * 109.47486 * 295.00613 * 13 2 1 15 15 C 1.46894 * 111.00353 * 179.97438 * 14 13 2 16 16 H 1.08999 * 109.55027 * 324.80693 * 15 14 13 17 17 C 1.53175 * 109.55058 * 84.99577 * 15 14 13 18 18 C 1.53090 * 109.24411 * 177.14282 * 17 15 14 19 19 O 1.42969 * 109.39370 * 302.08372 * 18 17 15 20 20 C 1.42541 * 114.13251 * 60.47854 * 19 18 17 21 21 C 1.53582 * 110.07360 * 178.30205 * 20 19 18 22 22 C 1.54342 * 106.49575 * 240.73034 * 21 20 19 23 23 C 1.54911 * 104.20299 * 23.57068 * 22 21 20 24 24 C 1.54009 * 109.80004 * 60.90106 * 20 19 18 25 25 C 1.52774 * 110.35093 * 299.85114 * 20 19 18 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 30 30 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 31 31 H 0.97004 * 120.00016 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47194 * 55.00274 * 13 2 1 33 33 H 1.08997 * 109.47756 * 174.99755 * 13 2 1 34 34 H 1.00906 * 110.99364 * 303.95285 * 14 13 2 35 35 H 1.09000 * 109.51226 * 297.07353 * 17 15 14 36 36 H 1.09003 * 109.51456 * 57.16652 * 17 15 14 37 37 H 1.08998 * 109.48277 * 62.05849 * 18 17 15 38 38 H 1.08996 * 109.48462 * 182.08931 * 18 17 15 39 39 H 1.08998 * 110.05571 * 359.97438 * 21 20 19 40 40 H 1.09005 * 110.05332 * 121.47132 * 21 20 19 41 41 H 1.09009 * 110.48533 * 264.89198 * 22 21 20 42 42 H 1.08995 * 110.60215 * 142.30799 * 22 21 20 43 43 H 1.08996 * 110.75438 * 203.88097 * 23 22 21 44 44 H 1.09008 * 110.74577 * 80.52758 * 23 22 21 45 45 H 1.09000 * 110.49896 * 214.59195 * 24 20 19 46 46 H 1.08996 * 110.50130 * 337.27642 * 24 20 19 47 47 H 1.09003 * 109.52048 * 296.78790 * 25 20 19 48 48 H 1.09004 * 109.51945 * 176.60152 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6748 -1.5198 -3.8512 9 14 1.4989 0.5628 -5.2496 10 1 2.5649 1.5416 -5.5825 11 1 1.3111 -0.3711 -6.3889 12 1 0.2282 1.2851 -4.9869 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.1247 -0.6270 3.6673 16 1 2.0781 -1.7080 3.5359 17 6 3.5700 -0.2072 3.9519 18 6 4.0323 -0.8469 5.2637 19 8 3.1570 -0.4471 6.3211 20 6 1.7985 -0.8346 6.1311 21 6 0.9522 -0.3973 7.3357 22 6 0.3631 -1.6856 7.9483 23 6 1.3343 -2.8025 7.4910 24 6 1.7003 -2.3693 6.0489 25 6 1.2431 -0.2136 4.8505 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 3.1263 -0.7994 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 2.9221 -1.8428 -4.7318 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2057 34 1 1.9881 0.9874 2.3967 35 1 4.2132 -0.5411 3.1377 36 1 3.6240 0.8782 4.0367 37 1 4.0120 -1.9323 5.1658 38 1 5.0477 -0.5211 5.4891 39 1 1.5791 0.1116 8.0680 40 1 0.1485 0.2623 7.0082 41 1 -0.6390 -1.8690 7.5601 42 1 0.3434 -1.6190 9.0360 43 1 0.8350 -3.7713 7.4882 44 1 2.2214 -2.8258 8.1241 45 1 0.9168 -2.6649 5.3512 46 1 2.6579 -2.7978 5.7531 47 1 1.2430 0.8726 4.9427 48 1 0.2247 -0.5662 4.6867 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602571344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:46 Heat of formation + Delta-G solvation = -81.609020 kcal Electronic energy + Delta-G solvation = -22937.900229 eV Core-core repulsion = 19797.953192 eV Total energy + Delta-G solvation = -3139.947037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58540 -37.26615 -36.08686 -34.55325 -32.34832 -30.81159 -30.41010 -28.96231 -26.85800 -26.06365 -24.64796 -23.64977 -22.37733 -21.58645 -20.48159 -19.40336 -18.84893 -16.68545 -16.34828 -16.13350 -15.73181 -14.97078 -14.86217 -14.55445 -14.30914 -14.12220 -13.78711 -13.35055 -13.23120 -13.08733 -12.48521 -12.13753 -11.94921 -11.81870 -11.57932 -11.54454 -11.40702 -11.37266 -11.15449 -11.07492 -10.92877 -10.85131 -10.77912 -10.68892 -10.30940 -10.28730 -10.10651 -9.70114 -9.55835 -9.11428 -8.93545 -8.32793 -8.08209 -5.97626 -3.98676 3.32885 3.39224 3.42733 3.60631 4.19617 4.37733 4.43850 4.50013 4.68395 4.72185 4.90788 4.93581 5.06003 5.21346 5.25203 5.28928 5.36418 5.38215 5.44732 5.52986 5.55542 5.61580 5.67363 5.72186 5.75667 5.82552 5.86083 5.89822 5.93046 6.06172 6.10606 6.11968 6.16608 6.22220 6.41960 6.56778 6.69110 7.02150 7.18750 7.20613 7.20774 7.37823 7.64984 7.70245 7.85560 8.02656 8.46814 9.07741 9.64699 11.13945 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.036266 B = 0.002927 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.879129 B = 9564.479692 C = 9745.651431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.681 5.681 15 C 0.087 3.913 16 H 0.076 0.924 17 C -0.187 4.187 18 C 0.062 3.938 19 O -0.373 6.373 20 C 0.116 3.884 21 C -0.111 4.111 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.153 4.153 25 C -0.125 4.125 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.259 0.741 32 H 0.065 0.935 33 H 0.024 0.976 34 H 0.338 0.662 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 -0.337 23.521 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.310 5.310 15 C -0.024 4.024 16 H 0.094 0.906 17 C -0.226 4.226 18 C -0.015 4.015 19 O -0.292 6.292 20 C 0.076 3.924 21 C -0.148 4.148 22 C -0.161 4.161 23 C -0.159 4.159 24 C -0.191 4.191 25 C -0.163 4.163 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.156 0.844 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.730 -0.631 23.557 23.628 hybrid contribution 0.838 0.493 -1.382 1.689 sum -0.893 -0.138 22.175 22.193 Atomic orbital electron populations 1.21583 0.95723 1.00523 1.00128 1.21198 0.96006 0.98892 0.94056 0.92888 1.19115 0.95846 0.95565 0.90467 1.21243 1.34580 1.08244 0.90994 0.92573 1.25024 0.95365 0.95087 0.99108 1.69968 1.39193 1.21194 1.23371 0.86628 0.78932 0.79805 0.82842 1.20769 1.21296 1.19873 1.22174 0.97149 0.97589 0.89515 1.60626 1.63491 1.05695 1.01211 1.21608 0.91162 0.99000 0.90626 0.90551 1.22955 0.99085 1.02022 0.98540 1.22538 0.93613 0.98509 0.86814 1.87899 1.17809 1.79301 1.44180 1.21925 0.82457 0.93094 0.94932 1.22120 0.98304 0.98020 0.96392 1.22371 0.98943 0.94529 1.00255 1.22465 0.99196 0.98150 0.96115 1.23040 1.02446 0.95842 0.97749 1.22181 0.99952 1.01366 0.92823 0.94217 0.92797 0.93956 0.97004 0.96594 0.93109 0.91695 0.95818 0.84436 0.90846 0.91009 0.92891 0.89131 0.90540 0.90637 0.91437 0.91536 0.91612 0.91428 0.90464 0.90901 0.91255 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 2 C -0.08 -1.69 2.48 -90.63 -0.22 -1.91 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.42 8.41 -34.44 -0.29 -14.71 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.06 1.10 4.88 -3.82 -0.02 1.08 16 14 N -0.68 -9.75 5.71 -106.50 -0.61 -10.36 16 15 C 0.09 1.06 2.33 -67.50 -0.16 0.90 16 16 H 0.08 0.98 7.11 -51.93 -0.37 0.61 16 17 C -0.19 -2.11 5.38 -26.59 -0.14 -2.25 16 18 C 0.06 0.65 6.58 37.20 0.24 0.89 16 19 O -0.37 -4.32 10.15 -35.23 -0.36 -4.68 16 20 C 0.12 1.18 0.98 -89.91 -0.09 1.10 16 21 C -0.11 -0.99 6.27 -25.73 -0.16 -1.15 16 22 C -0.12 -0.95 6.84 -25.02 -0.17 -1.12 16 23 C -0.12 -1.00 6.91 -24.69 -0.17 -1.17 16 24 C -0.15 -1.45 4.92 -25.17 -0.12 -1.58 16 25 C -0.12 -1.38 4.14 -26.72 -0.11 -1.49 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 28 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 33 H 0.02 0.41 7.50 -51.93 -0.39 0.02 16 34 H 0.34 4.70 8.45 -39.29 -0.33 4.37 16 35 H 0.07 0.87 7.54 -51.93 -0.39 0.48 16 36 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 37 H 0.05 0.52 6.06 -51.93 -0.31 0.20 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.71 7.95 -51.93 -0.41 0.29 16 40 H 0.07 0.63 7.66 -51.93 -0.40 0.23 16 41 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 45 H 0.08 0.74 7.74 -51.93 -0.40 0.34 16 46 H 0.07 0.71 5.82 -51.93 -0.30 0.40 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -29.67 360.43 -10.19 -39.86 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -9.07 Total: 0.76 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -1.30 Total: -21.42 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.13 Total: -36.73 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.36 Total: -4.68 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.67 -10.19 -39.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602571344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.749 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds