Wall clock time and date at job start Tue Mar 31 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46819 * 2 1 4 4 C 1.53001 * 109.47103 * 119.99838 * 2 1 3 5 5 C 1.50694 * 109.47168 * 295.00282 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.52998 * 109.47270 * 240.00009 * 2 1 3 14 14 N 1.46907 * 109.46923 * 64.99762 * 13 2 1 15 15 C 1.46898 * 110.99723 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.55441 * 35.00052 * 15 14 13 17 17 C 1.53185 * 109.55192 * 274.80627 * 15 14 13 18 18 C 1.53102 * 109.23078 * 182.95046 * 17 15 14 19 19 O 1.42969 * 109.47254 * 57.77512 * 18 17 15 20 20 C 1.42537 * 114.12775 * 299.56525 * 19 18 17 21 21 C 1.53990 * 109.84962 * 181.29293 * 20 19 18 22 22 C 1.54954 * 104.13654 * 95.92620 * 21 20 19 23 23 C 1.54921 * 102.78097 * 37.69999 * 22 21 20 24 24 C 1.53612 * 110.02973 * 298.69010 * 20 19 18 25 25 C 1.52766 * 110.35328 * 60.15594 * 20 19 18 26 26 H 1.08997 * 109.47437 * 299.99759 * 1 2 3 27 27 H 1.08995 * 109.47676 * 60.00319 * 1 2 3 28 28 H 1.09007 * 109.47149 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46922 * 174.99984 * 4 2 1 30 30 H 1.09003 * 109.46836 * 55.00740 * 4 2 1 31 31 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.47161 * 184.99769 * 13 2 1 33 33 H 1.09000 * 109.47109 * 304.99855 * 13 2 1 34 34 H 1.00895 * 110.99620 * 303.95446 * 14 13 2 35 35 H 1.09001 * 109.50892 * 302.78031 * 17 15 14 36 36 H 1.08998 * 109.51239 * 62.92468 * 17 15 14 37 37 H 1.08999 * 109.40234 * 297.79785 * 18 17 15 38 38 H 1.09003 * 109.48545 * 177.79764 * 18 17 15 39 39 H 1.09004 * 110.49417 * 214.59228 * 21 20 19 40 40 H 1.08996 * 110.49861 * 337.26220 * 21 20 19 41 41 H 1.08994 * 110.75003 * 279.37437 * 22 21 20 42 42 H 1.09004 * 110.90549 * 156.09211 * 22 21 20 43 43 H 1.09002 * 110.48048 * 203.52465 * 23 22 21 44 44 H 1.09001 * 110.48430 * 80.88847 * 23 22 21 45 45 H 1.09004 * 110.05374 * 359.93368 * 24 20 19 46 46 H 1.08997 * 110.05423 * 121.41252 * 24 20 19 47 47 H 1.09001 * 109.52298 * 183.39319 * 25 20 19 48 48 H 1.09000 * 109.52594 * 63.20299 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0799 0.9741 2.3758 7 6 1.9932 -0.4017 3.7283 8 7 2.6764 -1.5188 3.8511 9 14 1.4996 0.5634 5.2496 10 1 1.9945 -0.1367 6.4621 11 1 2.0917 1.9237 5.1865 12 1 0.0196 0.6700 5.3095 13 6 2.0400 -0.7212 -1.2492 14 7 1.6513 0.0375 -2.4456 15 6 2.1258 -0.6264 -3.6671 16 1 2.0830 -1.7075 -3.5348 17 6 3.5694 -0.2018 -3.9537 18 6 4.0314 -0.8394 -5.2668 19 8 3.1522 -0.4455 -6.3231 20 6 1.7960 -0.8394 -6.1299 21 6 0.9459 -0.3956 -7.3347 22 6 0.8924 -1.6501 -8.2427 23 6 0.7863 -2.8090 -7.2201 24 6 1.6984 -2.3705 -6.0549 25 6 1.2399 -0.2191 -4.8493 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1264 -0.7994 1.2056 30 1 1.6054 -1.7198 1.2951 31 1 2.9243 -1.8413 4.7317 32 1 3.1264 -0.7994 -1.2056 33 1 1.6054 -1.7198 -1.2951 34 1 0.6528 0.1793 -2.4752 35 1 3.6191 0.8836 -4.0405 36 1 4.2146 -0.5326 -3.1399 37 1 4.0166 -1.9248 -5.1671 38 1 5.0447 -0.5088 -5.4948 39 1 -0.0567 -0.1151 -7.0118 40 1 1.4257 0.4327 -7.8560 41 1 1.8042 -1.7385 -8.8334 42 1 0.0157 -1.6247 -8.8899 43 1 1.1482 -3.7390 -7.6588 44 1 -0.2422 -2.9226 -6.8776 45 1 2.6877 -2.8141 -6.1674 46 1 1.2597 -2.6710 -5.1034 47 1 0.2237 -0.5765 -4.6830 48 1 1.2344 0.8668 -4.9431 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602571345.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:52 Heat of formation + Delta-G solvation = -81.555782 kcal Electronic energy + Delta-G solvation = -22940.689840 eV Core-core repulsion = 19800.745112 eV Total energy + Delta-G solvation = -3139.944728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.58093 -37.25286 -36.13975 -34.53860 -32.37165 -30.80458 -30.42046 -29.00451 -26.89642 -26.18383 -24.68086 -23.77093 -22.40346 -21.46325 -20.54068 -19.13941 -18.63703 -16.81420 -16.36874 -16.29443 -15.62010 -15.29667 -14.91604 -14.65583 -14.35310 -13.98642 -13.61319 -13.37273 -13.31985 -13.01430 -12.53322 -12.31709 -11.99729 -11.85435 -11.66431 -11.49832 -11.43940 -11.35597 -11.22029 -11.09345 -10.88511 -10.80663 -10.75388 -10.66529 -10.36325 -10.21868 -10.12315 -9.71223 -9.56350 -9.12153 -8.95514 -8.32420 -8.14535 -5.97273 -3.98474 3.34676 3.38957 3.41562 3.62086 4.18211 4.32096 4.37634 4.49098 4.63507 4.79403 4.87577 4.98763 5.11165 5.16537 5.20627 5.30830 5.38389 5.41886 5.44206 5.51800 5.55899 5.60234 5.64327 5.70140 5.76076 5.79807 5.82015 5.88669 5.94713 6.04189 6.05831 6.08072 6.10087 6.25737 6.32834 6.47771 6.56424 6.95720 7.10651 7.17412 7.20758 7.38917 7.66109 7.70204 7.86269 8.02907 8.46818 9.07674 9.64827 11.14255 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.036721 B = 0.002923 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.325246 B = 9577.886100 C = 9752.361977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.029 3.971 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.065 3.935 14 N -0.685 5.685 15 C 0.085 3.915 16 H 0.042 0.958 17 C -0.143 4.143 18 C 0.059 3.941 19 O -0.371 6.371 20 C 0.120 3.880 21 C -0.111 4.111 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.153 4.153 25 C -0.141 4.141 26 H 0.062 0.938 27 H 0.031 0.969 28 H 0.040 0.960 29 H 0.014 0.986 30 H 0.013 0.987 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.022 0.978 34 H 0.338 0.662 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.525 -0.993 -23.621 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.203 1.203 13 C -0.063 4.063 14 N -0.317 5.317 15 C -0.025 4.025 16 H 0.060 0.940 17 C -0.182 4.182 18 C -0.018 4.018 19 O -0.291 6.291 20 C 0.080 3.920 21 C -0.148 4.148 22 C -0.161 4.161 23 C -0.160 4.160 24 C -0.190 4.190 25 C -0.179 4.179 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.158 0.842 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.854 -0.588 -23.595 23.675 hybrid contribution -0.836 -0.513 1.319 1.644 sum -2.690 -1.101 -22.276 22.465 Atomic orbital electron populations 1.21736 0.96717 1.00377 1.00259 1.21222 0.94839 1.00103 0.94156 0.91646 1.19099 0.96088 0.95321 0.90368 1.21205 1.34687 1.08289 0.91005 0.92619 1.25023 0.95330 0.95092 0.99094 1.69958 1.39030 1.21241 1.23483 0.86686 0.78851 0.80161 0.82470 1.21370 1.20254 1.20316 1.22178 1.00292 0.94272 0.89597 1.60595 1.19406 1.50568 1.01139 1.21542 0.94844 0.96195 0.89871 0.93975 1.22197 0.96356 1.02403 0.97198 1.22628 0.93615 0.98488 0.87083 1.87900 1.17570 1.79322 1.44262 1.21834 0.82834 0.92791 0.94585 1.22342 0.98973 0.98556 0.94949 1.22506 1.01817 0.94425 0.97347 1.22331 0.99636 0.98294 0.95720 1.22851 1.00920 0.95866 0.99381 1.22369 0.98990 1.02372 0.94188 0.91861 0.94988 0.94087 0.96717 0.96824 0.93043 0.91565 0.95973 0.84229 0.90401 0.90830 0.93253 0.88851 0.90295 0.90395 0.91244 0.91489 0.91654 0.91562 0.90827 0.91083 0.91161 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.77 37.16 0.33 -2.17 16 2 C -0.08 -1.73 2.54 -90.62 -0.23 -1.96 16 3 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.74 4.45 -27.89 -0.12 0.62 16 5 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.07 1.14 4.95 -3.82 -0.02 1.12 16 14 N -0.69 -10.12 6.31 -106.49 -0.67 -10.79 16 15 C 0.09 1.08 2.33 -67.49 -0.16 0.92 16 16 H 0.04 0.55 6.51 -51.93 -0.34 0.22 16 17 C -0.14 -1.76 5.62 -26.58 -0.15 -1.91 16 18 C 0.06 0.63 6.53 37.21 0.24 0.87 16 19 O -0.37 -4.37 10.17 -35.23 -0.36 -4.73 16 20 C 0.12 1.22 0.97 -89.91 -0.09 1.13 16 21 C -0.11 -0.96 6.09 -25.18 -0.15 -1.12 16 22 C -0.12 -0.95 6.91 -24.69 -0.17 -1.12 16 23 C -0.12 -0.97 6.84 -25.02 -0.17 -1.14 16 24 C -0.15 -1.45 5.18 -25.72 -0.13 -1.58 16 25 C -0.14 -1.53 3.84 -26.73 -0.10 -1.64 16 26 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 27 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 28 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.07 1.20 7.52 -51.93 -0.39 0.81 16 33 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 34 H 0.34 4.74 6.62 -39.29 -0.26 4.48 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.95 7.55 -51.93 -0.39 0.55 16 37 H 0.05 0.50 6.46 -51.93 -0.34 0.16 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.61 7.84 -51.93 -0.41 0.21 16 40 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.72 6.50 -51.93 -0.34 0.38 16 46 H 0.07 0.70 6.62 -51.93 -0.34 0.36 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -29.81 357.94 -10.16 -39.98 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -8.93 Total: 0.98 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -1.32 Total: -21.23 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.06 Total: -37.17 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.36 Total: -4.73 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.81 -10.16 -39.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602571345.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.579 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds