Wall clock time and date at job start Tue Mar 31 2020 06:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46945 * 2 1 4 4 C 1.52996 * 109.47185 * 239.99581 * 2 1 3 5 5 C 1.50703 * 109.47171 * 65.00087 * 4 2 1 6 6 H 1.08004 * 119.99521 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99893 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99352 * 180.02562 * 7 5 4 9 9 Si 1.86790 * 120.00099 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47294 * 90.00069 * 9 7 5 11 11 H 1.48497 * 109.47270 * 209.99841 * 9 7 5 12 12 H 1.48503 * 109.47599 * 329.99845 * 9 7 5 13 13 C 1.53006 * 109.47234 * 119.99498 * 2 1 3 14 14 N 1.46898 * 109.47006 * 295.00220 * 13 2 1 15 15 C 1.46903 * 110.99673 * 179.97438 * 14 13 2 16 16 H 1.08994 * 109.55202 * 35.00563 * 15 14 13 17 17 C 1.53180 * 109.55309 * 274.80487 * 15 14 13 18 18 C 1.53107 * 109.22872 * 182.95155 * 17 15 14 19 19 O 1.42973 * 109.47399 * 57.77605 * 18 17 15 20 20 C 1.42530 * 114.12959 * 299.56554 * 19 18 17 21 21 C 1.53982 * 109.85472 * 181.28756 * 20 19 18 22 22 C 1.54959 * 104.13469 * 95.92664 * 21 20 19 23 23 C 1.54917 * 102.78175 * 37.70258 * 22 21 20 24 24 C 1.53616 * 110.03023 * 298.69350 * 20 19 18 25 25 C 1.52778 * 110.35427 * 60.15350 * 20 19 18 26 26 H 1.09002 * 109.47112 * 60.00472 * 1 2 3 27 27 H 1.09006 * 109.47389 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47743 * 299.99957 * 1 2 3 29 29 H 1.09004 * 109.46864 * 184.99545 * 4 2 1 30 30 H 1.08995 * 109.47184 * 304.99824 * 4 2 1 31 31 H 0.97009 * 119.99665 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47002 * 55.00002 * 13 2 1 33 33 H 1.08993 * 109.46955 * 175.00440 * 13 2 1 34 34 H 1.00906 * 111.00348 * 56.04933 * 14 13 2 35 35 H 1.09002 * 109.50851 * 302.77736 * 17 15 14 36 36 H 1.08990 * 109.51108 * 62.92588 * 17 15 14 37 37 H 1.09000 * 109.40026 * 297.80026 * 18 17 15 38 38 H 1.09003 * 109.49297 * 177.80984 * 18 17 15 39 39 H 1.08995 * 110.50374 * 214.58902 * 21 20 19 40 40 H 1.09003 * 110.49725 * 337.26985 * 21 20 19 41 41 H 1.09004 * 110.74928 * 279.38274 * 22 21 20 42 42 H 1.08999 * 110.90674 * 156.09882 * 22 21 20 43 43 H 1.09002 * 110.48873 * 203.52886 * 23 22 21 44 44 H 1.08999 * 110.48565 * 80.88427 * 23 22 21 45 45 H 1.08997 * 110.04798 * 359.93154 * 24 20 19 46 46 H 1.09001 * 110.05106 * 121.41806 * 24 20 19 47 47 H 1.08999 * 109.52216 * 183.39166 * 25 20 19 48 48 H 1.08998 * 109.51784 * 63.20189 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2491 5 6 1.6413 0.0569 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9933 -0.4020 -3.7282 8 7 1.6457 0.2775 -4.7992 9 14 2.9648 -1.9878 -3.9025 10 1 2.0265 -3.1329 -4.0192 11 1 3.8134 -1.9173 -5.1191 12 1 3.8269 -2.1741 -2.7078 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0376 2.4456 15 6 2.1247 -0.6269 3.6673 16 1 3.0883 -1.0989 3.4757 17 6 1.1098 -1.6900 4.0988 18 6 1.5737 -2.3265 5.4118 19 8 1.7210 -1.3112 6.4076 20 6 2.6764 -0.3062 6.0782 21 6 2.7791 0.7144 7.2267 22 6 3.9904 0.2254 8.0603 23 6 4.9754 -0.2734 6.9735 24 6 4.0680 -0.9361 5.9155 25 6 2.2741 0.4071 4.7884 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8900 29 1 3.1263 -0.7994 -1.2055 30 1 1.6054 -1.7198 -1.2950 31 1 1.8937 -0.0451 -5.6799 32 1 1.6054 -1.7197 1.2953 33 1 3.1262 -0.7993 1.2057 34 1 0.6527 0.1794 2.4754 35 1 0.1353 -1.2245 4.2459 36 1 1.0353 -2.4564 3.3274 37 1 2.5310 -2.8235 5.2549 38 1 0.8350 -3.0563 5.7431 39 1 2.9648 1.7139 6.8337 40 1 1.8712 0.7028 7.8298 41 1 3.6997 -0.5907 8.7218 42 1 4.4270 1.0456 8.6300 43 1 5.6684 -1.0029 7.3926 44 1 5.5194 0.5648 6.5382 45 1 4.0143 -2.0108 6.0894 46 1 4.4534 -0.7377 4.9154 47 1 3.0432 1.1302 4.5169 48 1 1.3251 0.9220 4.9378 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602571346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:57 Heat of formation + Delta-G solvation = -78.529812 kcal Electronic energy + Delta-G solvation = -23002.322178 eV Core-core repulsion = 19862.508666 eV Total energy + Delta-G solvation = -3139.813512 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62641 -37.41882 -36.17111 -34.64410 -32.34907 -30.82353 -30.57395 -29.00560 -27.46462 -26.16557 -24.82978 -23.62712 -22.09403 -21.61347 -20.67594 -19.21727 -18.78733 -16.88984 -16.72350 -16.36111 -15.73246 -15.20107 -14.66329 -14.64385 -14.45627 -14.03051 -13.72948 -13.56908 -13.29905 -13.06976 -12.69509 -12.37989 -12.18928 -11.90341 -11.70168 -11.63877 -11.56063 -11.35380 -11.28339 -11.14734 -11.02888 -10.96110 -10.79966 -10.70608 -10.47117 -10.24482 -9.82871 -9.73634 -9.65510 -9.35177 -9.05450 -8.51705 -8.18890 -6.01884 -3.98750 3.30848 3.38534 3.42010 3.57304 4.13928 4.34409 4.37751 4.46763 4.62772 4.67819 4.86081 4.88710 5.04191 5.12080 5.18823 5.27530 5.29966 5.31642 5.43845 5.46791 5.50751 5.56582 5.64625 5.65513 5.66358 5.73026 5.80963 5.83985 5.90641 5.93189 5.98210 6.04805 6.06955 6.14685 6.19852 6.37065 6.45339 6.76947 6.96179 7.06077 7.15816 7.24497 7.32030 7.47850 7.59808 7.82961 8.57673 9.03903 9.61049 11.11615 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029728 B = 0.003149 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.637192 B = 8889.941387 C = 9049.338382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 H 0.071 0.929 4 C -0.008 4.008 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.062 3.938 14 N -0.683 5.683 15 C 0.085 3.915 16 H 0.077 0.923 17 C -0.186 4.186 18 C 0.064 3.936 19 O -0.372 6.372 20 C 0.116 3.884 21 C -0.110 4.110 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.152 4.152 25 C -0.126 4.126 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.034 0.966 29 H 0.014 0.986 30 H 0.009 0.991 31 H 0.262 0.738 32 H 0.023 0.977 33 H 0.065 0.935 34 H 0.340 0.660 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.937 -3.193 25.761 26.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 H 0.090 0.910 4 C -0.046 4.046 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.313 5.313 15 C -0.026 4.026 16 H 0.095 0.905 17 C -0.225 4.225 18 C -0.014 4.014 19 O -0.291 6.291 20 C 0.076 3.924 21 C -0.148 4.148 22 C -0.161 4.161 23 C -0.160 4.160 24 C -0.190 4.190 25 C -0.164 4.164 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.160 0.840 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.386 -2.752 25.671 26.039 hybrid contribution -0.040 -1.757 -0.645 1.872 sum 3.346 -4.509 25.026 25.648 Atomic orbital electron populations 1.21748 0.96242 1.00458 1.00822 1.21032 0.95207 1.00201 0.93010 0.91030 1.19597 0.95892 0.95656 0.93451 1.21138 1.35283 1.09559 0.89090 0.90818 1.25031 0.95668 0.96950 0.95965 1.69918 1.47220 1.39306 0.98004 0.86801 0.80655 0.84311 0.77629 1.20449 1.21461 1.19108 1.22189 1.00070 0.94575 0.89829 1.60653 1.19908 1.49736 1.00998 1.21643 0.97797 0.92655 0.90461 0.90519 1.22950 1.00794 1.00436 0.98369 1.22500 1.00531 0.90195 0.88136 1.87902 1.60882 1.36974 1.43367 1.21940 0.87752 0.88209 0.94533 1.22339 0.99134 0.97449 0.95859 1.22508 0.95551 1.00636 0.97419 1.22329 0.97480 1.00152 0.96015 1.22850 0.95389 1.00676 1.00093 1.22162 1.02915 0.98275 0.93044 0.91324 0.94136 0.94735 0.96731 0.97306 0.92832 0.95875 0.91640 0.84025 0.90976 0.90933 0.93071 0.89137 0.90115 0.90531 0.91352 0.91475 0.91724 0.91419 0.91036 0.90808 0.90188 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.77 37.15 0.33 -2.15 16 2 C -0.08 -1.48 2.54 -90.62 -0.23 -1.71 16 3 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 4 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 5 C -0.51 -14.51 8.96 -34.44 -0.31 -14.82 16 6 H 0.07 2.24 7.30 -52.48 -0.38 1.86 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.05 13.96 55.43 0.77 -27.27 16 9 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 13 C 0.06 1.00 4.95 -3.82 -0.02 0.99 16 14 N -0.68 -9.50 6.26 -106.49 -0.67 -10.17 16 15 C 0.08 1.00 2.31 -67.49 -0.16 0.84 16 16 H 0.08 0.94 6.51 -51.93 -0.34 0.60 16 17 C -0.19 -1.99 5.39 -26.58 -0.14 -2.13 16 18 C 0.06 0.63 6.53 37.21 0.24 0.87 16 19 O -0.37 -4.16 10.17 -35.23 -0.36 -4.52 16 20 C 0.12 1.14 0.97 -89.90 -0.09 1.06 16 21 C -0.11 -0.95 6.09 -25.19 -0.15 -1.11 16 22 C -0.12 -0.95 6.91 -24.69 -0.17 -1.12 16 23 C -0.12 -0.96 6.84 -25.02 -0.17 -1.13 16 24 C -0.15 -1.40 5.18 -25.71 -0.13 -1.53 16 25 C -0.13 -1.35 4.18 -26.72 -0.11 -1.47 16 26 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.53 6.68 -51.93 -0.35 0.19 16 29 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 30 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.02 0.37 7.51 -51.93 -0.39 -0.02 16 33 H 0.07 1.08 8.06 -51.93 -0.42 0.67 16 34 H 0.34 4.60 6.70 -39.29 -0.26 4.34 16 35 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 36 H 0.07 0.79 7.55 -51.93 -0.39 0.40 16 37 H 0.05 0.47 6.46 -51.93 -0.34 0.14 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.64 7.83 -51.93 -0.41 0.23 16 40 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.66 6.50 -51.93 -0.34 0.33 16 46 H 0.07 0.71 6.62 -51.93 -0.34 0.36 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 354.39 15.07 5.34 5.34 Total: -1.00 -30.08 354.39 -9.78 -39.86 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.89 Total: 1.49 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -1.31 Total: -21.92 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.11 Total: -37.44 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.36 Total: -4.52 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.08 -9.78 -39.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602571346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.670 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds