Wall clock time and date at job start Tue Mar 31 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46986 * 2 1 4 4 C 1.52990 * 109.47596 * 120.00445 * 2 1 3 5 5 C 1.50707 * 109.47191 * 295.00000 * 4 2 1 6 6 H 1.08008 * 119.99575 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00411 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99871 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00106 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47034 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47294 * 120.00094 * 9 7 5 12 12 H 1.48504 * 109.47070 * 240.00390 * 9 7 5 13 13 C 1.53004 * 109.46861 * 240.00602 * 2 1 3 14 14 N 1.46895 * 109.47354 * 64.99658 * 13 2 1 15 15 C 1.48528 * 111.00109 * 52.60305 * 14 13 2 16 16 C 1.54938 * 103.22787 * 159.72208 * 15 14 13 17 17 C 1.54599 * 102.92231 * 322.58512 * 16 15 14 18 18 C 1.47905 * 110.99882 * 170.00018 * 14 13 2 19 19 H 1.08997 * 110.08446 * 333.59867 * 18 14 13 20 20 C 1.53003 * 109.91568 * 94.80370 * 18 14 13 21 21 C 1.53174 * 109.61696 * 64.26435 * 20 18 14 22 22 C 1.53095 * 109.16381 * 176.89131 * 21 20 18 23 23 O 1.42910 * 109.41337 * 302.39093 * 22 21 20 24 24 C 1.42902 * 114.09650 * 61.15575 * 23 22 21 25 25 C 1.53093 * 109.41910 * 298.84413 * 24 23 22 26 26 H 1.08997 * 109.47762 * 59.99822 * 1 2 3 27 27 H 1.09006 * 109.46986 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46736 * 299.99449 * 1 2 3 29 29 H 1.08998 * 109.47531 * 54.99600 * 4 2 1 30 30 H 1.09000 * 109.47792 * 175.00474 * 4 2 1 31 31 H 0.96999 * 120.00397 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47234 * 304.99372 * 13 2 1 33 33 H 1.09004 * 109.46601 * 184.99935 * 13 2 1 34 34 H 1.08998 * 110.66692 * 41.28840 * 15 14 13 35 35 H 1.08998 * 110.81253 * 278.22396 * 15 14 13 36 36 H 1.09001 * 110.72186 * 204.22831 * 16 15 14 37 37 H 1.08999 * 110.72865 * 80.94422 * 16 15 14 38 38 H 1.08997 * 110.30700 * 263.04557 * 17 16 15 39 39 H 1.08998 * 110.30803 * 140.87372 * 17 16 15 40 40 H 1.09002 * 109.54370 * 304.04086 * 20 18 14 41 41 H 1.09004 * 109.52433 * 296.79634 * 21 20 18 42 42 H 1.08999 * 109.52728 * 56.98569 * 21 20 18 43 43 H 1.08998 * 109.48473 * 182.41141 * 22 21 20 44 44 H 1.08998 * 109.49081 * 62.38034 * 22 21 20 45 45 H 1.08997 * 109.48292 * 178.85819 * 24 23 22 46 46 H 1.09005 * 109.48948 * 58.82779 * 24 23 22 47 47 H 1.09003 * 109.51855 * 297.70418 * 25 24 23 48 48 H 1.08993 * 109.52292 * 177.51569 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6415 0.0569 2.4766 6 1 1.0807 0.9745 2.3757 7 6 1.9925 -0.4024 3.7282 8 7 2.6757 -1.5194 3.8510 9 14 1.4990 0.5626 5.2496 10 1 0.7435 1.7749 4.8434 11 1 0.6444 -0.2858 6.1184 12 1 2.7174 0.9665 5.9964 13 6 2.0399 -0.7211 -1.2494 14 7 1.6513 0.0375 -2.4457 15 6 2.0752 1.4569 -2.3369 16 6 2.0773 1.9401 -3.8090 17 6 2.6026 0.7057 -4.5773 18 6 2.3239 -0.4929 -3.6514 19 1 3.2617 -0.9749 -3.3754 20 6 1.4107 -1.4964 -4.3586 21 6 0.1553 -0.7805 -4.8662 22 6 -0.7135 -1.7765 -5.6387 23 8 0.0449 -2.3344 -6.7138 24 6 1.2053 -3.0563 -6.2962 25 6 2.1512 -2.1117 -5.5500 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6055 -1.7198 1.2950 30 1 3.1264 -0.7994 1.2055 31 1 2.9231 -1.8424 4.7316 32 1 1.6054 -1.7197 -1.2953 33 1 3.1263 -0.7993 -1.2057 34 1 3.0744 1.5281 -1.9072 35 1 1.3616 2.0299 -1.7449 36 1 2.7501 2.7883 -3.9355 37 1 1.0683 2.1952 -4.1327 38 1 3.6729 0.8013 -4.7604 39 1 2.0658 0.5894 -5.5187 40 1 1.1247 -2.2836 -3.6610 41 1 -0.4070 -0.3868 -4.0194 42 1 0.4442 0.0384 -5.5251 43 1 -1.5875 -1.2626 -6.0388 44 1 -1.0357 -2.5739 -4.9690 45 1 1.7136 -3.4643 -7.1698 46 1 0.9086 -3.8705 -5.6349 47 1 2.4804 -1.3198 -6.2227 48 1 3.0162 -2.6702 -5.1924 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602584483.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:24 Heat of formation + Delta-G solvation = -70.619148 kcal Electronic energy + Delta-G solvation = -23464.427498 eV Core-core repulsion = 20324.957018 eV Total energy + Delta-G solvation = -3139.470480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.17489 -38.45294 -35.53540 -33.71108 -32.43929 -31.14035 -30.65628 -28.48350 -26.78187 -25.49302 -24.29967 -23.62263 -22.74570 -21.50713 -20.80569 -18.96693 -18.56069 -16.51315 -16.35937 -16.07941 -15.70930 -15.31227 -14.81267 -14.47080 -14.33753 -14.26544 -13.82935 -13.45301 -12.85761 -12.68641 -12.57748 -12.34825 -12.04376 -11.86829 -11.73751 -11.37700 -11.36499 -11.10543 -11.01640 -10.86951 -10.80799 -10.73339 -10.57278 -10.45281 -10.30137 -10.22042 -10.01383 -9.63248 -9.55048 -9.14529 -8.92830 -8.33546 -8.07999 -5.98139 -3.99218 3.31370 3.39046 3.42977 3.79047 4.12375 4.47346 4.57507 4.69025 4.82326 4.91726 4.94343 5.03462 5.08258 5.18276 5.31254 5.37841 5.43091 5.48035 5.56304 5.59580 5.69191 5.71922 5.75875 5.79593 5.83008 5.91181 5.92142 6.02851 6.10744 6.14346 6.20906 6.24150 6.26974 6.42337 6.44441 6.54503 6.66479 7.02526 7.08739 7.10811 7.19865 7.29671 7.46187 7.69132 7.84798 8.02138 8.46219 9.07371 9.64303 11.13457 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026521 B = 0.003592 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.522774 B = 7793.534108 C = 8118.583035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.084 4.084 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.053 3.947 14 N -0.506 5.506 15 C 0.038 3.962 16 C -0.123 4.123 17 C -0.130 4.130 18 C 0.070 3.930 19 H 0.049 0.951 20 C -0.071 4.071 21 C -0.141 4.141 22 C 0.058 3.942 23 O -0.388 6.388 24 C 0.063 3.937 25 C -0.153 4.153 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.015 0.985 30 H 0.011 0.989 31 H 0.259 0.741 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.043 0.957 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.048 0.952 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.071 0.929 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 1.286 -20.529 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.103 4.103 3 H 0.075 0.925 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.074 4.074 14 N -0.230 5.230 15 C -0.090 4.090 16 C -0.162 4.162 17 C -0.168 4.168 18 C -0.038 4.038 19 H 0.067 0.933 20 C -0.090 4.090 21 C -0.179 4.179 22 C -0.019 4.019 23 O -0.307 6.307 24 C -0.014 4.014 25 C -0.191 4.191 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.029 0.971 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.067 0.933 47 H 0.090 0.910 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.590 1.140 -20.617 20.810 hybrid contribution 0.920 0.351 1.506 1.799 sum -1.670 1.490 -19.111 19.242 Atomic orbital electron populations 1.21590 0.95742 1.00586 1.00050 1.21270 0.95959 0.99079 0.93968 0.92546 1.19121 0.95828 0.95570 0.90507 1.21270 1.34491 1.08228 0.90974 0.92560 1.25018 0.95344 0.95087 0.99094 1.69974 1.39176 1.21276 1.23254 0.86585 0.78246 0.80152 0.83324 1.19749 1.21070 1.21125 1.22476 0.97422 0.97696 0.89818 1.64675 1.54262 1.01892 1.02193 1.23164 0.99495 0.90227 0.96082 1.22489 1.01299 0.97000 0.95362 1.22553 1.00563 0.94548 0.99108 1.22365 0.95123 0.94993 0.91364 0.93259 1.21055 0.95150 0.97261 0.95528 1.22177 0.96734 0.98357 1.00626 1.22656 0.93988 0.95927 0.89302 1.87894 1.38672 1.71369 1.32772 1.22530 0.86348 0.93353 0.99194 1.22281 0.98868 1.00002 0.97958 0.94056 0.94133 0.92798 0.96618 0.97051 0.93166 0.91365 0.95391 0.93867 0.89835 0.91625 0.91060 0.92105 0.90568 0.91016 0.89498 0.91253 0.89243 0.93361 0.89264 0.93331 0.91008 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 2 C -0.08 -1.70 2.02 -90.62 -0.18 -1.89 16 3 H 0.06 1.16 6.52 -51.93 -0.34 0.82 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.32 8.41 -34.44 -0.29 -14.61 16 6 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.05 0.93 4.42 -3.82 -0.02 0.91 16 14 N -0.51 -7.26 4.01 -222.57 -0.89 -8.15 16 15 C 0.04 0.52 5.08 -1.90 -0.01 0.51 16 16 C -0.12 -1.35 7.06 -24.87 -0.18 -1.52 16 17 C -0.13 -1.37 5.44 -25.37 -0.14 -1.51 16 18 C 0.07 0.86 2.24 -66.64 -0.15 0.71 16 19 H 0.05 0.65 7.58 -51.93 -0.39 0.26 16 20 C -0.07 -0.79 2.25 -90.44 -0.20 -0.99 16 21 C -0.14 -1.52 4.97 -26.59 -0.13 -1.65 16 22 C 0.06 0.59 6.84 37.21 0.25 0.85 16 23 O -0.39 -4.44 10.77 -35.23 -0.38 -4.82 16 24 C 0.06 0.60 6.84 37.21 0.25 0.85 16 25 C -0.15 -1.47 5.27 -26.59 -0.14 -1.61 16 26 H 0.04 0.70 7.75 -51.93 -0.40 0.30 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.03 0.50 7.82 -51.93 -0.41 0.10 16 34 H 0.04 0.63 8.01 -51.93 -0.42 0.22 16 35 H 0.08 1.20 7.56 -51.93 -0.39 0.81 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.76 5.00 -51.93 -0.26 0.50 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.09 1.04 7.86 -51.93 -0.41 0.63 16 42 H 0.07 0.74 5.97 -51.93 -0.31 0.43 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.68 6.87 -51.93 -0.36 0.32 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -29.64 357.67 -10.03 -39.67 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -9.05 Total: -2.57 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -0.82 Total: -19.91 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.16 Total: -34.46 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.38 Total: -4.82 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.64 -10.03 -39.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602584483.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.945 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds