Wall clock time and date at job start Tue Mar 31 2020 06:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46880 * 2 1 4 4 C 1.52996 * 109.47251 * 239.99448 * 2 1 3 5 5 C 1.50696 * 109.47162 * 65.00310 * 4 2 1 6 6 H 1.08004 * 120.00199 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00309 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99837 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00346 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47170 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.46831 * 300.00306 * 9 7 5 12 12 H 1.48505 * 109.46855 * 59.99725 * 9 7 5 13 13 C 1.53000 * 109.47086 * 119.99644 * 2 1 3 14 14 N 1.46906 * 109.47212 * 295.00186 * 13 2 1 15 15 C 1.48559 * 111.00115 * 285.42092 * 14 13 2 16 16 C 1.54372 * 104.59691 * 200.95974 * 15 14 13 17 17 C 1.54261 * 105.05995 * 23.84759 * 16 15 14 18 18 C 1.48556 * 111.00305 * 169.99882 * 14 13 2 19 19 H 1.09006 * 110.41135 * 40.25955 * 18 14 13 20 20 C 1.53005 * 110.41170 * 277.82195 * 18 14 13 21 21 C 1.53174 * 109.53999 * 302.78654 * 20 18 14 22 22 C 1.53105 * 109.15435 * 183.24306 * 21 20 18 23 23 O 1.42897 * 109.49060 * 57.47559 * 22 21 20 24 24 C 1.42904 * 114.09835 * 298.89008 * 23 22 21 25 25 C 1.53092 * 109.41476 * 61.15577 * 24 23 22 26 26 H 1.08995 * 109.47273 * 60.00728 * 1 2 3 27 27 H 1.09010 * 109.46868 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47533 * 300.00128 * 1 2 3 29 29 H 1.08998 * 109.47735 * 304.99620 * 4 2 1 30 30 H 1.09008 * 109.47275 * 185.00027 * 4 2 1 31 31 H 0.96999 * 119.99903 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47606 * 54.99992 * 13 2 1 33 33 H 1.09003 * 109.47559 * 175.00262 * 13 2 1 34 34 H 1.09001 * 110.40826 * 319.73568 * 15 14 13 35 35 H 1.09003 * 110.41534 * 82.17574 * 15 14 13 36 36 H 1.08996 * 110.32477 * 264.95501 * 16 15 14 37 37 H 1.08995 * 110.32902 * 142.74827 * 16 15 14 38 38 H 1.09004 * 110.32768 * 241.10448 * 17 16 15 39 39 H 1.09004 * 110.32304 * 118.89746 * 17 16 15 40 40 H 1.08994 * 109.54426 * 62.96732 * 20 18 14 41 41 H 1.08999 * 109.53005 * 303.06195 * 21 20 18 42 42 H 1.09004 * 109.51952 * 63.25175 * 21 20 18 43 43 H 1.09007 * 109.40567 * 297.49607 * 22 21 20 44 44 H 1.09005 * 109.49132 * 177.51648 * 22 21 20 45 45 H 1.08997 * 109.48088 * 301.17507 * 24 23 22 46 46 H 1.09000 * 109.48566 * 181.13966 * 24 23 22 47 47 H 1.08995 * 109.52529 * 182.48762 * 25 24 23 48 48 H 1.09000 * 109.52504 * 62.29478 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0800 0.9740 -2.3758 7 6 1.9933 -0.4019 -3.7281 8 7 2.6765 -1.5190 -3.8509 9 14 1.4986 0.5623 -5.2497 10 1 1.9949 -0.1371 -6.4620 11 1 0.0186 0.6678 -5.3093 12 1 2.0897 1.9232 -5.1871 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0376 2.4457 15 6 2.4880 1.2556 2.5988 16 6 2.3618 1.6291 4.0913 17 6 1.9850 0.3135 4.8033 18 6 1.9153 -0.7442 3.6810 19 1 2.8638 -1.2752 3.5995 20 6 0.7730 -1.7274 3.9446 21 6 -0.5494 -0.9611 4.0460 22 6 -1.6735 -1.9422 4.3899 23 8 -1.3601 -2.6177 5.6095 24 6 -0.1585 -3.3895 5.5569 25 6 1.0267 -2.4663 5.2622 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6055 -1.7199 -1.2950 30 1 3.1264 -0.7996 -1.2055 31 1 2.9244 -1.8416 -4.7315 32 1 1.6054 -1.7197 1.2953 33 1 3.1263 -0.7994 1.2057 34 1 3.5261 1.0376 2.3479 35 1 2.1054 2.0609 1.9717 36 1 1.5774 2.3729 4.2305 37 1 3.3125 2.0052 4.4692 38 1 1.0156 0.4116 5.2919 39 1 2.7509 0.0438 5.5306 40 1 0.7157 -2.4472 3.1281 41 1 -0.4742 -0.2065 4.8289 42 1 -0.7645 -0.4782 3.0927 43 1 -1.7760 -2.6716 3.5863 44 1 -2.6096 -1.3962 4.5068 45 1 -0.2412 -4.1377 4.7687 46 1 -0.0032 -3.8860 6.5148 47 1 1.9377 -3.0587 5.1780 48 1 1.1348 -1.7430 6.0704 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602584484.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:26 Heat of formation + Delta-G solvation = -71.575667 kcal Electronic energy + Delta-G solvation = -23560.217136 eV Core-core repulsion = 20420.705179 eV Total energy + Delta-G solvation = -3139.511958 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.11406 -38.38802 -35.44355 -33.80900 -32.46584 -31.12029 -30.66429 -28.43922 -26.80094 -25.40402 -24.35163 -23.57541 -22.74919 -21.50434 -20.67376 -18.97957 -18.65294 -16.47036 -16.35789 -16.06045 -15.61105 -15.23422 -14.77424 -14.48606 -14.41152 -14.22504 -13.86949 -13.53163 -12.98237 -12.56078 -12.50132 -12.27643 -12.02974 -11.98293 -11.70485 -11.36050 -11.35255 -11.18426 -11.00924 -10.83938 -10.75867 -10.61209 -10.58005 -10.47635 -10.26572 -10.23650 -9.99663 -9.61219 -9.50864 -9.10118 -8.94782 -8.31601 -8.14054 -5.96632 -3.97681 3.34787 3.39124 3.41684 3.82597 4.11947 4.48468 4.56961 4.68906 4.82981 4.90696 4.96061 5.05711 5.08716 5.23773 5.32744 5.39132 5.40329 5.47135 5.55911 5.61060 5.69178 5.71586 5.77436 5.81322 5.83444 5.88833 5.95266 6.03900 6.11353 6.14390 6.20328 6.22252 6.31070 6.41649 6.47618 6.56596 6.72138 7.03429 7.08900 7.14810 7.22073 7.28524 7.45102 7.70499 7.86849 8.03698 8.48037 9.08533 9.65630 11.14905 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021876 B = 0.003911 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.655013 B = 7158.046879 C = 7734.039475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.050 3.950 14 N -0.498 5.498 15 C 0.034 3.966 16 C -0.124 4.124 17 C -0.122 4.122 18 C 0.066 3.934 19 H 0.047 0.953 20 C -0.072 4.072 21 C -0.141 4.141 22 C 0.057 3.943 23 O -0.388 6.388 24 C 0.062 3.938 25 C -0.151 4.151 26 H 0.052 0.948 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.015 0.985 30 H 0.011 0.989 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.048 0.952 44 H 0.090 0.910 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 0.327 20.038 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.095 4.095 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.203 1.203 13 C -0.077 4.077 14 N -0.222 5.222 15 C -0.094 4.094 16 C -0.162 4.162 17 C -0.160 4.160 18 C -0.042 4.042 19 H 0.065 0.935 20 C -0.091 4.091 21 C -0.178 4.178 22 C -0.020 4.020 23 O -0.307 6.307 24 C -0.015 4.015 25 C -0.189 4.189 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.067 0.933 44 H 0.108 0.892 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.764 0.344 19.984 20.338 hybrid contribution 1.030 0.160 -1.272 1.645 sum -2.734 0.504 18.712 18.917 Atomic orbital electron populations 1.21573 0.95844 1.00309 1.00106 1.21130 0.95842 0.98972 0.93580 0.92796 1.19120 0.95804 0.95516 0.90568 1.21195 1.34562 1.08263 0.90992 0.92661 1.25013 0.95344 0.95082 0.99054 1.69958 1.39103 1.21244 1.23445 0.86702 0.78918 0.80111 0.82534 1.21379 1.20258 1.20329 1.22484 0.97583 0.97339 0.90316 1.65337 1.50706 1.04946 1.01210 1.23083 0.95784 0.94509 0.96031 1.22283 1.01124 0.97591 0.95174 1.22436 1.01866 0.94522 0.97187 1.22594 0.96361 0.94247 0.91030 0.93465 1.21028 0.94906 0.96539 0.96652 1.22172 0.93830 0.98173 1.03627 1.22672 0.98193 0.94652 0.86433 1.87891 1.41937 1.65320 1.35538 1.22526 0.84416 0.92812 1.01703 1.22252 0.98686 0.99618 0.98378 0.92875 0.94388 0.93911 0.96712 0.97095 0.93076 0.91546 0.95245 0.94092 0.90024 0.91328 0.91930 0.90496 0.92056 0.91091 0.91235 0.89125 0.93342 0.89164 0.93343 0.89283 0.91230 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.89 37.16 0.33 -2.00 16 2 C -0.08 -1.56 2.39 -90.62 -0.22 -1.77 16 3 H 0.05 1.13 7.28 -51.93 -0.38 0.75 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.38 8.41 -34.44 -0.29 -14.66 16 6 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.05 0.87 4.17 -3.82 -0.02 0.85 16 14 N -0.50 -7.12 3.73 -222.14 -0.83 -7.95 16 15 C 0.03 0.46 5.90 -2.19 -0.01 0.44 16 16 C -0.12 -1.33 7.00 -25.35 -0.18 -1.51 16 17 C -0.12 -1.28 5.28 -25.35 -0.13 -1.41 16 18 C 0.07 0.81 2.09 -66.07 -0.14 0.67 16 19 H 0.05 0.61 8.00 -51.93 -0.42 0.19 16 20 C -0.07 -0.82 2.18 -90.43 -0.20 -1.02 16 21 C -0.14 -1.60 4.99 -26.59 -0.13 -1.73 16 22 C 0.06 0.62 6.84 37.21 0.25 0.88 16 23 O -0.39 -4.59 10.77 -35.23 -0.38 -4.97 16 24 C 0.06 0.61 6.84 37.21 0.25 0.86 16 25 C -0.15 -1.46 5.27 -26.59 -0.14 -1.60 16 26 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 27 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.01 0.30 8.14 -51.92 -0.42 -0.13 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.07 1.16 7.21 -51.93 -0.37 0.78 16 33 H 0.03 0.53 7.77 -51.93 -0.40 0.12 16 34 H 0.04 0.57 7.75 -51.93 -0.40 0.17 16 35 H 0.08 1.15 7.73 -51.93 -0.40 0.75 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.80 5.49 -51.93 -0.29 0.51 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.91 7.35 -51.93 -0.38 0.53 16 41 H 0.07 0.78 5.92 -51.93 -0.31 0.47 16 42 H 0.09 1.17 7.70 -51.93 -0.40 0.77 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.69 7.13 -51.93 -0.37 0.32 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -29.66 357.74 -9.98 -39.64 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -9.04 Total: -2.59 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -0.84 Total: -19.92 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: -0.09 Total: -34.31 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.38 Total: -4.97 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.66 -9.98 -39.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602584484.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.940 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds