Wall clock time and date at job start Tue Mar 31 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.47002 * 2 1 4 4 C 1.52996 * 109.47021 * 240.00045 * 2 1 3 5 5 C 1.50695 * 109.47438 * 65.00050 * 4 2 1 6 6 H 1.08004 * 119.99650 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00211 * 179.72675 * 5 4 2 8 8 N 1.31515 * 119.99708 * 0.26931 * 7 5 4 9 9 Si 1.86796 * 120.00119 * 180.27464 * 7 5 4 10 10 H 1.48506 * 109.47148 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47447 * 119.99558 * 9 7 5 12 12 H 1.48497 * 109.46996 * 239.99946 * 9 7 5 13 13 C 1.52999 * 109.47099 * 119.99899 * 2 1 3 14 14 N 1.46903 * 109.46875 * 185.30275 * 13 2 1 15 15 C 1.47449 * 110.99780 * 75.49814 * 14 13 2 16 16 C 1.54317 * 107.22873 * 123.25759 * 15 14 13 17 17 C 1.55137 * 103.02640 * 22.28220 * 16 15 14 18 18 C 1.47843 * 110.99723 * 196.33874 * 14 13 2 19 19 H 1.09003 * 110.37599 * 332.46787 * 18 14 13 20 20 C 1.53004 * 110.37211 * 94.81066 * 18 14 13 21 21 C 1.53178 * 109.54150 * 299.81767 * 20 18 14 22 22 C 1.53097 * 109.15481 * 183.24098 * 21 20 18 23 23 O 1.42899 * 109.48645 * 57.47934 * 22 21 20 24 24 C 1.42897 * 114.09875 * 298.88244 * 23 22 21 25 25 C 1.53091 * 109.41461 * 61.16149 * 24 23 22 26 26 H 1.08994 * 109.47033 * 303.75538 * 1 2 3 27 27 H 1.09001 * 109.47112 * 63.75423 * 1 2 3 28 28 H 1.08998 * 109.46796 * 183.75568 * 1 2 3 29 29 H 1.08999 * 109.46871 * 304.99524 * 4 2 1 30 30 H 1.09004 * 109.47296 * 184.99842 * 4 2 1 31 31 H 0.96999 * 119.99975 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47257 * 305.29712 * 13 2 1 33 33 H 1.08993 * 109.47128 * 65.30042 * 13 2 1 34 34 H 1.08997 * 109.88617 * 242.66112 * 15 14 13 35 35 H 1.08998 * 109.89248 * 3.68849 * 15 14 13 36 36 H 1.09004 * 110.70301 * 140.66698 * 16 15 14 37 37 H 1.08999 * 110.70821 * 263.89481 * 16 15 14 38 38 H 1.08997 * 110.99210 * 82.43129 * 17 16 15 39 39 H 1.09000 * 110.99318 * 206.21990 * 17 16 15 40 40 H 1.08997 * 109.54222 * 59.99679 * 20 18 14 41 41 H 1.08999 * 109.52052 * 303.06353 * 21 20 18 42 42 H 1.09004 * 109.52074 * 63.24716 * 21 20 18 43 43 H 1.08993 * 109.41078 * 297.49259 * 22 21 20 44 44 H 1.09007 * 109.48859 * 177.51185 * 22 21 20 45 45 H 1.08995 * 109.48188 * 301.17640 * 24 23 22 46 46 H 1.09000 * 109.48984 * 181.14617 * 24 23 22 47 47 H 1.08998 * 109.52984 * 182.48921 * 25 24 23 48 48 H 1.08997 * 109.52293 * 62.29167 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9977 -0.3991 -3.7280 8 7 2.6809 -1.5161 -3.8508 9 14 1.5102 0.5696 -5.2489 10 1 0.7517 1.7800 -4.8428 11 1 2.7314 0.9757 -5.9897 12 1 0.6593 -0.2769 -6.1233 13 6 2.0401 -0.7212 1.2492 14 7 3.5035 -0.6113 1.3149 15 6 3.9132 0.7384 1.7445 16 6 4.7913 0.5708 3.0024 17 6 5.2968 -0.8911 2.8837 18 6 4.0669 -1.5978 2.2611 19 1 3.3379 -1.8418 3.0338 20 6 4.4996 -2.8627 1.5169 21 6 3.2876 -3.4852 0.8168 22 6 3.7133 -4.7923 0.1429 23 8 4.2683 -5.6741 1.1209 24 6 5.4326 -5.1634 1.7732 25 6 5.0757 -3.8724 2.5144 26 1 -0.3633 0.5710 0.8544 27 1 -0.3633 0.4545 -0.9217 28 1 -0.3633 -1.0255 0.0673 29 1 1.6054 -1.7198 -1.2951 30 1 3.1264 -0.7994 -1.2056 31 1 2.9320 -1.8368 -4.7312 32 1 1.6013 -0.2651 2.1367 33 1 1.7563 -1.7726 1.2031 34 1 4.4870 1.2210 0.9534 35 1 3.0326 1.3356 1.9809 36 1 5.6272 1.2702 2.9849 37 1 4.1975 0.7010 3.9071 38 1 6.1598 -0.9533 2.2208 39 1 5.5301 -1.3045 3.8649 40 1 5.2578 -2.6086 0.7762 41 1 2.5093 -3.6920 1.5513 42 1 2.9062 -2.7937 0.0654 43 1 4.4613 -4.5793 -0.6206 44 1 2.8454 -5.2624 -0.3196 45 1 6.2032 -4.9553 1.0310 46 1 5.8034 -5.9007 2.4852 47 1 5.9718 -3.4576 2.9760 48 1 4.3345 -4.0873 3.2842 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602584485.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:29 Heat of formation + Delta-G solvation = -71.085528 kcal Electronic energy + Delta-G solvation = -24065.367104 eV Core-core repulsion = 20925.876400 eV Total energy + Delta-G solvation = -3139.490704 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.86928 -38.25151 -35.33997 -33.69248 -32.37433 -31.04049 -30.32117 -28.40446 -26.92989 -25.21522 -24.02316 -23.41229 -22.74827 -20.86154 -20.32665 -19.60669 -18.53058 -16.59626 -16.05850 -15.83890 -15.66054 -15.07729 -14.59823 -14.41443 -14.01645 -13.64889 -13.56882 -13.17781 -13.05159 -12.71253 -12.45911 -12.20597 -11.94515 -11.84772 -11.39410 -11.24481 -11.21979 -11.02249 -10.89059 -10.88119 -10.79283 -10.71864 -10.48580 -10.32827 -10.26090 -9.95474 -9.87737 -9.61012 -9.20932 -9.03846 -8.76927 -8.22772 -7.76669 -5.88238 -3.87732 3.36009 3.43909 3.47287 4.10002 4.22413 4.54686 4.72474 4.78468 5.05723 5.07880 5.11541 5.18428 5.31866 5.44867 5.47676 5.48373 5.61719 5.64365 5.73838 5.78177 5.82192 5.85901 5.87958 5.97147 5.98693 6.01471 6.11231 6.11958 6.15564 6.26255 6.31426 6.38564 6.39293 6.44109 6.56574 6.66437 6.71311 7.01480 7.08310 7.32662 7.44282 7.47839 7.62699 7.86263 8.08071 8.20673 8.59275 9.19759 9.74313 11.22761 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014398 B = 0.005719 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.185747 B = 4894.476646 C = 6008.357338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 H 0.054 0.946 4 C 0.038 3.962 5 C -0.511 4.511 6 H 0.051 0.949 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.053 3.947 14 N -0.510 5.510 15 C 0.046 3.954 16 C -0.142 4.142 17 C -0.123 4.123 18 C 0.080 3.920 19 H 0.047 0.953 20 C -0.069 4.069 21 C -0.155 4.155 22 C 0.062 3.938 23 O -0.391 6.391 24 C 0.063 3.937 25 C -0.149 4.149 26 H 0.026 0.974 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.008 0.992 30 H 0.033 0.967 31 H 0.256 0.744 32 H 0.016 0.984 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.106 0.894 43 H 0.053 0.947 44 H 0.092 0.908 45 H 0.048 0.952 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.028 -2.254 14.944 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 H 0.072 0.928 4 C 0.001 3.999 5 C -0.550 4.550 6 H 0.070 0.930 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.712 3.288 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.213 1.213 13 C -0.074 4.074 14 N -0.233 5.233 15 C -0.082 4.082 16 C -0.181 4.181 17 C -0.161 4.161 18 C -0.028 4.028 19 H 0.065 0.935 20 C -0.088 4.088 21 C -0.192 4.192 22 C -0.015 4.015 23 O -0.310 6.310 24 C -0.014 4.014 25 C -0.188 4.188 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.027 0.973 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.124 0.876 43 H 0.072 0.928 44 H 0.110 0.890 45 H 0.066 0.934 46 H 0.104 0.896 47 H 0.087 0.913 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.193 -2.631 14.347 15.483 hybrid contribution -0.514 1.030 -0.197 1.168 sum 4.679 -1.601 14.150 14.989 Atomic orbital electron populations 1.21730 0.96660 1.00376 1.00475 1.21207 0.93979 0.99290 0.95674 0.92797 1.19037 0.97326 0.94341 0.89233 1.21355 1.34038 1.08190 0.91411 0.93041 1.24966 0.95516 0.95090 0.98783 1.69971 1.39227 1.21237 1.22927 0.86682 0.78162 0.80218 0.83774 1.19963 1.21239 1.21256 1.22600 0.86293 1.01219 0.97324 1.63369 1.10558 1.02303 1.47100 1.22804 0.98367 0.91398 0.95625 1.22793 0.99726 0.97198 0.98371 1.22727 0.98220 0.94805 1.00328 1.22530 0.95059 0.92792 0.92429 0.93497 1.21076 0.98055 0.92854 0.96818 1.22404 0.97662 0.97738 1.01401 1.22620 0.98409 0.90477 0.89963 1.87876 1.43899 1.43815 1.55374 1.22487 0.87885 0.95302 0.95753 1.22245 1.01338 0.96291 0.98895 0.95445 0.91635 0.93825 0.97322 0.94829 0.93390 0.96537 0.90881 0.90547 0.92989 0.91155 0.92101 0.90632 0.91490 0.90326 0.92410 0.87592 0.92837 0.88967 0.93388 0.89605 0.91275 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.06 37.16 0.34 -2.20 16 2 C -0.08 -1.67 2.38 -90.62 -0.22 -1.89 16 3 H 0.05 1.13 7.45 -51.93 -0.39 0.75 16 4 C 0.04 0.94 3.42 -27.89 -0.10 0.84 16 5 C -0.51 -14.24 8.36 -34.44 -0.29 -14.52 16 6 H 0.05 1.42 7.07 -52.48 -0.37 1.04 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 9 Si 0.88 21.80 29.54 -169.99 -5.02 16.77 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.05 0.92 3.33 -3.82 -0.01 0.90 16 14 N -0.51 -8.34 3.87 -223.38 -0.86 -9.20 16 15 C 0.05 0.67 6.23 -2.83 -0.02 0.66 16 16 C -0.14 -1.65 6.94 -24.91 -0.17 -1.83 16 17 C -0.12 -1.43 5.62 -24.59 -0.14 -1.56 16 18 C 0.08 1.11 2.08 -66.18 -0.14 0.97 16 19 H 0.05 0.65 7.81 -51.93 -0.41 0.25 16 20 C -0.07 -0.97 2.01 -90.43 -0.18 -1.16 16 21 C -0.15 -2.46 3.96 -26.59 -0.11 -2.57 16 22 C 0.06 0.96 6.84 37.21 0.25 1.22 16 23 O -0.39 -5.91 10.77 -35.23 -0.38 -6.29 16 24 C 0.06 0.76 6.84 37.20 0.25 1.01 16 25 C -0.15 -1.74 5.20 -26.59 -0.14 -1.87 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 1.34 6.85 -51.93 -0.36 0.98 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.01 0.23 7.60 -51.93 -0.39 -0.17 16 30 H 0.03 0.91 7.62 -51.93 -0.40 0.52 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.02 0.27 7.78 -51.93 -0.40 -0.14 16 33 H 0.07 1.27 5.35 -51.93 -0.28 1.00 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 0.76 7.19 -51.93 -0.37 0.39 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.90 8.05 -51.93 -0.42 0.49 16 39 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 40 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 41 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 42 H 0.11 2.03 4.94 -51.93 -0.26 1.77 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.09 1.41 8.14 -51.92 -0.42 0.99 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 0.68 7.51 -51.93 -0.39 0.29 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 355.44 15.07 5.36 5.36 Total: -1.00 -29.51 355.44 -9.96 -39.47 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -9.04 Total: 0.20 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -0.76 Total: -20.47 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.13 Total: -35.05 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.38 Total: -6.29 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.51 -9.96 -39.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602584485.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.614 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds