Wall clock time and date at job start Tue Mar 31 2020 06:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.47002 * 2 1 4 4 C 1.52996 * 109.47021 * 240.00045 * 2 1 3 5 5 C 1.50695 * 109.47438 * 65.00050 * 4 2 1 6 6 H 1.08004 * 119.99650 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00211 * 179.72675 * 5 4 2 8 8 N 1.31515 * 119.99708 * 0.26931 * 7 5 4 9 9 Si 1.86796 * 120.00119 * 180.27464 * 7 5 4 10 10 H 1.48506 * 109.47148 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47447 * 119.99558 * 9 7 5 12 12 H 1.48497 * 109.46996 * 239.99946 * 9 7 5 13 13 C 1.52999 * 109.47099 * 119.99899 * 2 1 3 14 14 N 1.46903 * 109.46875 * 185.30275 * 13 2 1 15 15 C 1.47449 * 110.99780 * 75.49814 * 14 13 2 16 16 C 1.54317 * 107.22873 * 123.25759 * 15 14 13 17 17 C 1.55137 * 103.02640 * 22.28220 * 16 15 14 18 18 C 1.47843 * 110.99723 * 196.33874 * 14 13 2 19 19 H 1.09003 * 110.37599 * 332.46787 * 18 14 13 20 20 C 1.53004 * 110.37211 * 94.81066 * 18 14 13 21 21 C 1.53178 * 109.54150 * 299.81767 * 20 18 14 22 22 C 1.53097 * 109.15481 * 183.24098 * 21 20 18 23 23 O 1.42899 * 109.48645 * 57.47934 * 22 21 20 24 24 C 1.42897 * 114.09875 * 298.88244 * 23 22 21 25 25 C 1.53091 * 109.41461 * 61.16149 * 24 23 22 26 26 H 1.08994 * 109.47033 * 303.75538 * 1 2 3 27 27 H 1.09001 * 109.47112 * 63.75423 * 1 2 3 28 28 H 1.08998 * 109.46796 * 183.75568 * 1 2 3 29 29 H 1.08999 * 109.46871 * 304.99524 * 4 2 1 30 30 H 1.09004 * 109.47296 * 184.99842 * 4 2 1 31 31 H 0.96999 * 119.99975 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47257 * 305.29712 * 13 2 1 33 33 H 1.08993 * 109.47128 * 65.30042 * 13 2 1 34 34 H 1.08997 * 109.88617 * 242.66112 * 15 14 13 35 35 H 1.08998 * 109.89248 * 3.68849 * 15 14 13 36 36 H 1.09004 * 110.70301 * 140.66698 * 16 15 14 37 37 H 1.08999 * 110.70821 * 263.89481 * 16 15 14 38 38 H 1.08997 * 110.99210 * 82.43129 * 17 16 15 39 39 H 1.09000 * 110.99318 * 206.21990 * 17 16 15 40 40 H 1.08997 * 109.54222 * 59.99679 * 20 18 14 41 41 H 1.08999 * 109.52052 * 303.06353 * 21 20 18 42 42 H 1.09004 * 109.52074 * 63.24716 * 21 20 18 43 43 H 1.08993 * 109.41078 * 297.49259 * 22 21 20 44 44 H 1.09007 * 109.48859 * 177.51185 * 22 21 20 45 45 H 1.08995 * 109.48188 * 301.17640 * 24 23 22 46 46 H 1.09000 * 109.48984 * 181.14617 * 24 23 22 47 47 H 1.08998 * 109.52984 * 182.48921 * 25 24 23 48 48 H 1.08997 * 109.52293 * 62.29167 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9977 -0.3991 -3.7280 8 7 2.6809 -1.5161 -3.8508 9 14 1.5102 0.5696 -5.2489 10 1 0.7517 1.7800 -4.8428 11 1 2.7314 0.9757 -5.9897 12 1 0.6593 -0.2769 -6.1233 13 6 2.0401 -0.7212 1.2492 14 7 3.5035 -0.6113 1.3149 15 6 3.9132 0.7384 1.7445 16 6 4.7913 0.5708 3.0024 17 6 5.2968 -0.8911 2.8837 18 6 4.0669 -1.5978 2.2611 19 1 3.3379 -1.8418 3.0338 20 6 4.4996 -2.8627 1.5169 21 6 3.2876 -3.4852 0.8168 22 6 3.7133 -4.7923 0.1429 23 8 4.2683 -5.6741 1.1209 24 6 5.4326 -5.1634 1.7732 25 6 5.0757 -3.8724 2.5144 26 1 -0.3633 0.5710 0.8544 27 1 -0.3633 0.4545 -0.9217 28 1 -0.3633 -1.0255 0.0673 29 1 1.6054 -1.7198 -1.2951 30 1 3.1264 -0.7994 -1.2056 31 1 2.9320 -1.8368 -4.7312 32 1 1.6013 -0.2651 2.1367 33 1 1.7563 -1.7726 1.2031 34 1 4.4870 1.2210 0.9534 35 1 3.0326 1.3356 1.9809 36 1 5.6272 1.2702 2.9849 37 1 4.1975 0.7010 3.9071 38 1 6.1598 -0.9533 2.2208 39 1 5.5301 -1.3045 3.8649 40 1 5.2578 -2.6086 0.7762 41 1 2.5093 -3.6920 1.5513 42 1 2.9062 -2.7937 0.0654 43 1 4.4613 -4.5793 -0.6206 44 1 2.8454 -5.2624 -0.3196 45 1 6.2032 -4.9553 1.0310 46 1 5.8034 -5.9007 2.4852 47 1 5.9718 -3.4576 2.9760 48 1 4.3345 -4.0873 3.2842 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602584485.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:28 Heat of formation + Delta-G solvation = -87.860121 kcal Electronic energy + Delta-G solvation = -24066.094505 eV Core-core repulsion = 20925.876400 eV Total energy + Delta-G solvation = -3140.218105 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.02837 -39.43229 -36.97020 -34.88601 -34.34759 -32.29638 -31.55836 -29.50191 -28.92843 -26.58602 -25.30521 -24.66250 -24.48341 -22.02093 -21.47534 -20.75089 -20.11687 -18.50586 -17.44133 -17.03249 -16.83467 -16.55314 -16.14290 -15.70620 -15.27691 -15.12200 -14.79389 -14.63215 -14.20775 -14.11728 -13.86927 -13.61808 -13.49643 -13.22491 -13.02394 -12.78245 -12.59783 -12.39739 -12.27382 -12.23480 -12.13593 -12.00868 -11.91337 -11.80030 -11.52142 -11.44641 -11.28121 -11.05936 -10.87016 -10.74714 -10.44449 -10.33710 -9.00427 -8.09320 -6.16558 1.38994 1.40006 1.51732 2.45242 2.97138 3.07817 3.23553 3.64322 3.75524 3.96878 4.06227 4.08100 4.13799 4.16926 4.22699 4.36850 4.37466 4.43501 4.50293 4.59144 4.67789 4.72011 4.75730 4.81043 4.83447 4.89078 4.94354 4.95113 4.98176 5.03033 5.03725 5.08580 5.22053 5.24753 5.32706 5.37118 5.40117 5.44727 5.52362 5.53448 5.69697 5.98867 6.06454 6.28570 6.29985 6.38798 6.42669 7.01629 7.49821 9.01590 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014398 B = 0.005719 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.185747 B = 4894.476646 C = 6008.357338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.077 4.077 3 H 0.045 0.955 4 C 0.056 3.944 5 C -0.528 4.528 6 H 0.052 0.948 7 C 0.002 3.998 8 N -0.928 5.928 9 Si 0.951 3.049 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.281 1.281 13 C 0.066 3.934 14 N -0.538 5.538 15 C 0.042 3.958 16 C -0.131 4.131 17 C -0.116 4.116 18 C 0.081 3.919 19 H 0.054 0.946 20 C -0.066 4.066 21 C -0.148 4.148 22 C 0.066 3.934 23 O -0.401 6.401 24 C 0.053 3.947 25 C -0.138 4.138 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.044 0.956 29 H -0.019 1.019 30 H 0.002 0.998 31 H 0.258 0.742 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.038 0.962 44 H 0.088 0.912 45 H 0.047 0.953 46 H 0.115 0.885 47 H 0.095 0.905 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.333 -1.641 17.138 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.096 4.096 3 H 0.063 0.937 4 C 0.019 3.981 5 C -0.566 4.566 6 H 0.070 0.930 7 C -0.196 4.196 8 N -0.569 5.569 9 Si 0.777 3.223 10 H -0.189 1.189 11 H -0.208 1.208 12 H -0.207 1.207 13 C -0.062 4.062 14 N -0.261 5.261 15 C -0.086 4.086 16 C -0.170 4.170 17 C -0.154 4.154 18 C -0.027 4.027 19 H 0.072 0.928 20 C -0.085 4.085 21 C -0.186 4.186 22 C -0.011 4.011 23 O -0.321 6.321 24 C -0.023 4.023 25 C -0.176 4.176 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.063 0.937 29 H -0.001 1.001 30 H 0.021 0.979 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.106 0.894 45 H 0.065 0.935 46 H 0.133 0.867 47 H 0.114 0.886 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.500 -2.007 16.554 17.559 hybrid contribution -0.584 0.816 -0.906 1.352 sum 4.915 -1.191 15.648 16.445 Atomic orbital electron populations 1.21650 0.95331 1.00847 1.00868 1.21066 0.95106 0.98339 0.95052 0.93680 1.18760 0.95117 0.93182 0.91067 1.21762 1.33781 1.08362 0.92694 0.92966 1.25819 0.95533 0.96088 1.02113 1.70111 1.40326 1.22807 1.23690 0.85612 0.77939 0.79015 0.79754 1.18931 1.20818 1.20704 1.22351 0.87280 1.00391 0.96184 1.63250 1.09966 1.03842 1.49087 1.22801 0.98771 0.90401 0.96649 1.22742 0.99693 0.97485 0.97057 1.22721 0.96706 0.94551 1.01377 1.22574 0.96181 0.92040 0.91938 0.92787 1.21046 0.96500 0.93977 0.97010 1.22260 0.98730 0.97005 1.00584 1.22468 0.97942 0.90646 0.90021 1.87856 1.45100 1.43904 1.55190 1.22784 0.86798 0.96517 0.96201 1.22180 1.02407 0.95034 0.98011 0.92118 0.93681 0.93718 1.00062 0.97938 0.93325 0.94511 0.91530 0.92673 0.93016 0.89719 0.90515 0.91224 0.88593 0.92662 0.91929 0.91416 0.94335 0.89423 0.93459 0.86742 0.88648 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 9.06 71.98 0.65 -4.18 16 2 C -0.08 -3.17 2.38 -10.79 -0.03 -3.19 16 3 H 0.04 1.93 7.45 -2.38 -0.02 1.91 16 4 C 0.06 2.94 3.42 29.85 0.10 3.04 16 5 C -0.53 -30.28 8.36 25.60 0.21 -30.07 16 6 H 0.05 2.92 7.07 -2.91 -0.02 2.90 16 7 C 0.00 0.10 5.46 84.66 0.46 0.56 16 8 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 9 Si 0.95 45.45 29.54 68.60 2.03 47.47 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 C 0.07 2.26 3.33 86.30 0.29 2.55 16 14 N -0.54 -17.62 3.87 -860.63 -3.33 -20.95 16 15 C 0.04 1.19 6.23 86.64 0.54 1.73 16 16 C -0.13 -2.69 6.94 31.77 0.22 -2.47 16 17 C -0.12 -2.36 5.62 31.98 0.18 -2.18 16 18 C 0.08 2.11 2.08 45.39 0.09 2.21 16 19 H 0.05 1.36 7.81 -2.39 -0.02 1.34 16 20 C -0.07 -1.85 2.01 -10.67 -0.02 -1.87 16 21 C -0.15 -4.90 3.96 30.69 0.12 -4.78 16 22 C 0.07 2.16 6.84 72.01 0.49 2.65 16 23 O -0.40 -11.98 10.77 -148.98 -1.60 -13.58 16 24 C 0.05 1.20 6.84 72.01 0.49 1.69 16 25 C -0.14 -2.89 5.20 30.69 0.16 -2.73 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.04 1.84 6.85 -2.39 -0.02 1.83 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H -0.02 -1.09 7.60 -2.39 -0.02 -1.11 16 30 H 0.00 0.13 7.62 -2.39 -0.02 0.11 16 31 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.04 1.11 7.78 -2.39 -0.02 1.10 16 33 H 0.07 2.36 5.35 -2.39 -0.01 2.35 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.05 1.46 7.19 -2.39 -0.02 1.44 16 36 H 0.08 1.51 8.14 -2.38 -0.02 1.50 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.52 8.05 -2.39 -0.02 1.50 16 39 H 0.10 1.45 8.11 -2.39 -0.02 1.43 16 40 H 0.05 1.79 8.13 -2.39 -0.02 1.77 16 41 H 0.06 1.96 7.75 -2.39 -0.02 1.94 16 42 H 0.07 2.79 4.94 -2.38 -0.01 2.77 16 43 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 44 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 45 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.10 1.53 7.51 -2.39 -0.02 1.51 16 48 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -65.94 355.44 2.24 -63.70 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.89 Total: 17.32 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 3.97 Total: -37.05 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -3.04 Total: -77.87 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -1.60 Total: -13.58 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -65.94 2.24 -63.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602584485.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.160 kcal (2) G-P(sol) polarization free energy of solvation -65.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds