Wall clock time and date at job start Tue Mar 31 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47864 * 2 1 4 4 C 1.53006 * 109.47274 * 120.00545 * 2 1 3 5 5 C 1.50697 * 109.46900 * 294.99656 * 4 2 1 6 6 H 1.08000 * 120.00321 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99997 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99845 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00142 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47513 * 270.00218 * 9 7 5 11 11 H 1.48502 * 109.47258 * 149.99854 * 9 7 5 12 12 H 1.48501 * 109.47174 * 30.00381 * 9 7 5 13 13 C 1.53006 * 109.47059 * 239.99917 * 2 1 3 14 14 N 1.46896 * 109.47325 * 174.79606 * 13 2 1 15 15 C 1.46851 * 111.00483 * 288.32723 * 14 13 2 16 16 C 1.53031 * 109.52180 * 174.15966 * 15 14 13 17 17 C 1.53119 * 109.27992 * 59.17948 * 16 15 14 18 18 C 1.53001 * 109.52048 * 182.43808 * 17 16 15 19 19 H 1.08997 * 110.43995 * 60.38366 * 18 17 16 20 20 C 1.54807 * 110.48832 * 297.83681 * 18 17 16 21 21 C 1.55226 * 101.99158 * 220.52303 * 20 18 17 22 22 O 1.44380 * 103.56466 * 36.87760 * 21 20 18 23 23 C 1.43747 * 106.97469 * 320.01809 * 22 21 20 24 24 C 1.53119 * 109.16137 * 302.34072 * 17 16 15 25 25 C 1.46846 * 111.00153 * 164.11321 * 14 13 2 26 26 H 1.09003 * 109.47089 * 305.40748 * 1 2 3 27 27 H 1.08991 * 109.47244 * 65.40238 * 1 2 3 28 28 H 1.09001 * 109.47264 * 185.40908 * 1 2 3 29 29 H 1.09002 * 109.47145 * 174.99731 * 4 2 1 30 30 H 1.09005 * 109.46779 * 54.99675 * 4 2 1 31 31 H 0.96995 * 119.99666 * 0.02562 * 8 7 5 32 32 H 1.09000 * 109.46994 * 294.80472 * 13 2 1 33 33 H 1.09007 * 109.46675 * 54.80280 * 13 2 1 34 34 H 1.08999 * 109.45878 * 294.17665 * 15 14 13 35 35 H 1.08999 * 109.46040 * 54.14265 * 15 14 13 36 36 H 1.08997 * 109.50790 * 299.23270 * 16 15 14 37 37 H 1.09007 * 109.53034 * 179.13975 * 16 15 14 38 38 H 1.08998 * 109.51930 * 62.24818 * 17 16 15 39 39 H 1.09004 * 110.91246 * 338.64504 * 20 18 17 40 40 H 1.09007 * 110.90984 * 102.24890 * 20 18 17 41 41 H 1.09008 * 110.51625 * 278.38842 * 21 20 18 42 42 H 1.09000 * 110.78579 * 155.50269 * 21 20 18 43 43 H 1.08997 * 109.87354 * 267.08144 * 23 22 21 44 44 H 1.09006 * 109.99844 * 146.00942 * 23 22 21 45 45 H 1.08996 * 109.50168 * 297.71849 * 24 17 16 46 46 H 1.09000 * 109.53289 * 177.61357 * 24 17 16 47 47 H 1.08999 * 109.46154 * 305.86371 * 25 14 13 48 48 H 1.09000 * 109.46007 * 65.83701 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0808 0.9744 2.3758 7 6 1.9924 -0.4025 3.7283 8 7 2.6756 -1.5196 3.8511 9 14 1.4990 0.5625 5.2497 10 1 2.5651 1.5412 5.5825 11 1 1.3111 -0.3714 6.3889 12 1 0.2283 1.2848 4.9871 13 6 2.0400 -0.7213 -1.2493 14 7 3.5035 -0.6135 -1.3138 15 6 3.9162 0.7546 -1.6524 16 6 5.4402 0.8647 -1.5681 17 6 6.0738 -0.1347 -2.5398 18 6 7.5975 -0.0722 -2.4161 19 1 7.9079 -0.3267 -1.4028 20 6 8.1154 1.3341 -2.8044 21 6 9.3942 0.9941 -3.6159 22 8 9.0295 -0.2023 -4.3373 23 6 8.2607 -1.0173 -3.4367 24 6 5.5900 -1.5461 -2.1956 25 6 4.0616 -1.5864 -2.2617 26 1 -0.3633 0.5954 0.8376 27 1 -0.3633 0.4277 -0.9343 28 1 -0.3634 -1.0231 0.0969 29 1 3.1263 -0.7996 1.2055 30 1 1.6053 -1.7200 1.2950 31 1 2.9328 -2.0201 3.0610 32 1 1.7546 -1.7723 -1.2039 33 1 1.6025 -0.2640 -2.1368 34 1 3.5903 0.9920 -2.6651 35 1 3.4621 1.4548 -0.9513 36 1 5.7656 0.6409 -0.5522 37 1 5.7477 1.8760 -1.8342 38 1 5.7797 0.1125 -3.5598 39 1 7.3890 1.8584 -3.4254 40 1 8.3593 1.9176 -1.9166 41 1 10.2312 0.7979 -2.9456 42 1 9.6389 1.8000 -4.3079 43 1 8.9161 -1.7190 -2.9208 44 1 7.4952 -1.5627 -3.9888 45 1 5.9177 -1.8078 -1.1895 46 1 6.0041 -2.2577 -2.9100 47 1 3.7131 -2.5863 -2.0032 48 1 3.7352 -1.3378 -3.2715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602607413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:04 Heat of formation + Delta-G solvation = -77.739099 kcal Electronic energy + Delta-G solvation = -23182.544476 eV Core-core repulsion = 20042.765252 eV Total energy + Delta-G solvation = -3139.779224 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.11904 -38.56922 -35.89486 -33.85377 -32.17317 -30.98269 -30.58343 -28.93631 -26.52156 -25.68413 -23.84539 -23.10209 -22.42779 -22.05055 -20.50673 -19.68937 -18.99191 -16.69041 -16.63479 -16.34329 -15.58502 -15.18672 -14.80828 -14.27272 -13.98572 -13.87487 -13.65757 -13.44498 -13.32724 -12.95799 -12.87288 -12.23612 -12.09704 -11.80304 -11.69556 -11.60274 -11.38840 -11.23489 -11.12423 -11.05096 -10.96371 -10.67767 -10.57497 -10.41457 -10.14922 -10.08222 -9.96417 -9.80805 -9.69023 -9.26989 -8.34985 -8.17812 -7.84487 -6.20987 -3.87599 3.48837 3.52571 3.67920 3.75559 4.19024 4.30341 4.45758 4.64256 4.66306 4.87834 4.95731 5.02845 5.07307 5.25259 5.33491 5.40053 5.46193 5.49133 5.54686 5.55678 5.62639 5.62970 5.68394 5.71578 5.72599 5.82373 5.89299 5.96879 6.02343 6.05325 6.13620 6.20870 6.22795 6.25533 6.34746 6.46928 6.51147 6.67853 6.91329 6.98580 7.19781 7.48337 7.50756 7.68657 7.87131 8.41033 8.64070 9.06015 9.83473 11.19806 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020656 B = 0.003733 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.240468 B = 7499.538895 C = 8141.138563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 H 0.056 0.944 4 C 0.024 3.976 5 C -0.594 4.594 6 H 0.045 0.955 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 1.066 2.934 10 H -0.290 1.290 11 H -0.286 1.286 12 H -0.291 1.291 13 C 0.064 3.936 14 N -0.526 5.526 15 C 0.058 3.942 16 C -0.110 4.110 17 C -0.076 4.076 18 C -0.117 4.117 19 H 0.086 0.914 20 C -0.150 4.150 21 C 0.045 3.955 22 O -0.382 6.382 23 C 0.049 3.951 24 C -0.114 4.114 25 C 0.058 3.942 26 H 0.062 0.938 27 H 0.028 0.972 28 H 0.045 0.955 29 H 0.024 0.976 30 H -0.002 1.002 31 H 0.269 0.731 32 H 0.066 0.934 33 H 0.019 0.981 34 H 0.022 0.978 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.176 3.603 -15.937 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.013 4.013 5 C -0.632 4.632 6 H 0.063 0.937 7 C -0.190 4.190 8 N -0.555 5.555 9 Si 0.896 3.104 10 H -0.217 1.217 11 H -0.212 1.212 12 H -0.217 1.217 13 C -0.064 4.064 14 N -0.250 5.250 15 C -0.070 4.070 16 C -0.148 4.148 17 C -0.094 4.094 18 C -0.135 4.135 19 H 0.104 0.896 20 C -0.187 4.187 21 C -0.032 4.032 22 O -0.301 6.301 23 C -0.028 4.028 24 C -0.151 4.151 25 C -0.070 4.070 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.016 0.984 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.037 0.963 34 H 0.041 0.959 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.091 0.909 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 9.497 3.442 -14.037 17.294 hybrid contribution -0.534 0.229 -2.190 2.266 sum 8.963 3.671 -16.227 18.898 Atomic orbital electron populations 1.21685 0.96352 1.01186 0.99689 1.21087 0.94211 0.99148 0.95038 0.92553 1.19149 0.96588 0.94420 0.91124 1.22137 1.38334 1.10079 0.92695 0.93706 1.25720 0.94969 0.97221 1.01137 1.70719 1.36279 1.14949 1.33601 0.83585 0.75844 0.75291 0.75691 1.21685 1.21193 1.21703 1.22262 0.85981 1.00749 0.97400 1.61800 1.10347 1.04074 1.48818 1.22069 0.95501 0.90994 0.98435 1.21637 0.94746 0.98088 1.00319 1.21228 0.92641 0.96133 0.99428 1.22607 0.96091 0.94726 1.00102 0.89600 1.23245 0.97516 0.97246 1.00707 1.23595 0.96534 0.87749 0.95294 1.88852 1.72294 1.31883 1.37113 1.23310 0.94405 0.93542 0.91494 1.21694 0.95144 0.95869 1.02417 1.22040 0.94839 0.96756 0.93409 0.91942 0.95255 0.93634 0.95821 0.98375 0.92004 0.91589 0.96329 0.95937 0.90136 0.90658 0.91888 0.91515 0.90369 0.90072 0.92345 0.89222 0.92488 0.89627 0.90664 0.91893 0.90946 0.95799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.91 37.16 0.33 -2.20 16 2 C -0.08 -1.57 2.35 -90.62 -0.21 -1.78 16 3 H 0.06 1.20 6.47 -51.93 -0.34 0.86 16 4 C 0.02 0.62 3.71 -27.88 -0.10 0.52 16 5 C -0.59 -16.99 8.47 -34.44 -0.29 -17.29 16 6 H 0.04 1.27 7.06 -52.49 -0.37 0.90 16 7 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 8 N -0.92 -28.68 13.65 55.43 0.76 -27.92 16 9 Si 1.07 25.89 29.90 -169.99 -5.08 20.80 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 13 C 0.06 1.11 4.36 -3.82 -0.02 1.09 16 14 N -0.53 -8.70 3.99 -234.67 -0.94 -9.64 16 15 C 0.06 0.86 5.30 -3.84 -0.02 0.84 16 16 C -0.11 -1.40 5.13 -26.65 -0.14 -1.54 16 17 C -0.08 -0.84 1.54 -90.50 -0.14 -0.98 16 18 C -0.12 -1.16 2.61 -89.09 -0.23 -1.39 16 19 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 20 C -0.15 -1.33 5.78 -24.60 -0.14 -1.47 16 21 C 0.04 0.40 7.72 38.34 0.30 0.69 16 22 O -0.38 -4.41 11.52 -35.23 -0.41 -4.81 16 23 C 0.05 0.49 6.94 37.73 0.26 0.76 16 24 C -0.11 -1.36 5.12 -26.65 -0.14 -1.49 16 25 C 0.06 0.80 5.44 -3.84 -0.02 0.77 16 26 H 0.06 1.29 7.12 -51.93 -0.37 0.92 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.02 0.65 7.49 -51.93 -0.39 0.26 16 30 H 0.00 -0.06 8.01 -51.93 -0.42 -0.47 16 31 H 0.27 8.44 7.22 -40.82 -0.29 8.15 16 32 H 0.07 1.16 7.87 -51.93 -0.41 0.75 16 33 H 0.02 0.30 8.06 -51.92 -0.42 -0.12 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 1.32 6.41 -51.93 -0.33 0.99 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.70 7.29 -51.93 -0.38 0.32 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.70 7.67 -51.93 -0.40 0.30 16 40 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.83 6.48 -51.93 -0.34 0.49 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 0.64 6.73 -51.93 -0.35 0.29 16 47 H 0.07 1.01 7.96 -51.93 -0.41 0.59 16 48 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 358.79 15.07 5.41 5.41 Total: -1.00 -31.35 358.79 -10.00 -41.35 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -9.08 Total: -2.00 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -0.66 Total: -23.19 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.18 Total: -37.56 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.41 Total: -4.81 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -5.08 Total: 20.80 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.35 -10.00 -41.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602607413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.384 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds