Wall clock time and date at job start Tue Mar 31 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47864 * 2 1 4 4 C 1.53006 * 109.47274 * 120.00545 * 2 1 3 5 5 C 1.50697 * 109.46900 * 294.99656 * 4 2 1 6 6 H 1.08000 * 120.00321 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99997 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99845 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00142 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47513 * 270.00218 * 9 7 5 11 11 H 1.48502 * 109.47258 * 149.99854 * 9 7 5 12 12 H 1.48501 * 109.47174 * 30.00381 * 9 7 5 13 13 C 1.53006 * 109.47059 * 239.99917 * 2 1 3 14 14 N 1.46896 * 109.47325 * 174.79606 * 13 2 1 15 15 C 1.46851 * 111.00483 * 288.32723 * 14 13 2 16 16 C 1.53031 * 109.52180 * 174.15966 * 15 14 13 17 17 C 1.53119 * 109.27992 * 59.17948 * 16 15 14 18 18 C 1.53001 * 109.52048 * 182.43808 * 17 16 15 19 19 H 1.08997 * 110.43995 * 60.38366 * 18 17 16 20 20 C 1.54807 * 110.48832 * 297.83681 * 18 17 16 21 21 C 1.55226 * 101.99158 * 220.52303 * 20 18 17 22 22 O 1.44380 * 103.56466 * 36.87760 * 21 20 18 23 23 C 1.43747 * 106.97469 * 320.01809 * 22 21 20 24 24 C 1.53119 * 109.16137 * 302.34072 * 17 16 15 25 25 C 1.46846 * 111.00153 * 164.11321 * 14 13 2 26 26 H 1.09003 * 109.47089 * 305.40748 * 1 2 3 27 27 H 1.08991 * 109.47244 * 65.40238 * 1 2 3 28 28 H 1.09001 * 109.47264 * 185.40908 * 1 2 3 29 29 H 1.09002 * 109.47145 * 174.99731 * 4 2 1 30 30 H 1.09005 * 109.46779 * 54.99675 * 4 2 1 31 31 H 0.96995 * 119.99666 * 0.02562 * 8 7 5 32 32 H 1.09000 * 109.46994 * 294.80472 * 13 2 1 33 33 H 1.09007 * 109.46675 * 54.80280 * 13 2 1 34 34 H 1.08999 * 109.45878 * 294.17665 * 15 14 13 35 35 H 1.08999 * 109.46040 * 54.14265 * 15 14 13 36 36 H 1.08997 * 109.50790 * 299.23270 * 16 15 14 37 37 H 1.09007 * 109.53034 * 179.13975 * 16 15 14 38 38 H 1.08998 * 109.51930 * 62.24818 * 17 16 15 39 39 H 1.09004 * 110.91246 * 338.64504 * 20 18 17 40 40 H 1.09007 * 110.90984 * 102.24890 * 20 18 17 41 41 H 1.09008 * 110.51625 * 278.38842 * 21 20 18 42 42 H 1.09000 * 110.78579 * 155.50269 * 21 20 18 43 43 H 1.08997 * 109.87354 * 267.08144 * 23 22 21 44 44 H 1.09006 * 109.99844 * 146.00942 * 23 22 21 45 45 H 1.08996 * 109.50168 * 297.71849 * 24 17 16 46 46 H 1.09000 * 109.53289 * 177.61357 * 24 17 16 47 47 H 1.08999 * 109.46154 * 305.86371 * 25 14 13 48 48 H 1.09000 * 109.46007 * 65.83701 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0808 0.9744 2.3758 7 6 1.9924 -0.4025 3.7283 8 7 2.6756 -1.5196 3.8511 9 14 1.4990 0.5625 5.2497 10 1 2.5651 1.5412 5.5825 11 1 1.3111 -0.3714 6.3889 12 1 0.2283 1.2848 4.9871 13 6 2.0400 -0.7213 -1.2493 14 7 3.5035 -0.6135 -1.3138 15 6 3.9162 0.7546 -1.6524 16 6 5.4402 0.8647 -1.5681 17 6 6.0738 -0.1347 -2.5398 18 6 7.5975 -0.0722 -2.4161 19 1 7.9079 -0.3267 -1.4028 20 6 8.1154 1.3341 -2.8044 21 6 9.3942 0.9941 -3.6159 22 8 9.0295 -0.2023 -4.3373 23 6 8.2607 -1.0173 -3.4367 24 6 5.5900 -1.5461 -2.1956 25 6 4.0616 -1.5864 -2.2617 26 1 -0.3633 0.5954 0.8376 27 1 -0.3633 0.4277 -0.9343 28 1 -0.3634 -1.0231 0.0969 29 1 3.1263 -0.7996 1.2055 30 1 1.6053 -1.7200 1.2950 31 1 2.9328 -2.0201 3.0610 32 1 1.7546 -1.7723 -1.2039 33 1 1.6025 -0.2640 -2.1368 34 1 3.5903 0.9920 -2.6651 35 1 3.4621 1.4548 -0.9513 36 1 5.7656 0.6409 -0.5522 37 1 5.7477 1.8760 -1.8342 38 1 5.7797 0.1125 -3.5598 39 1 7.3890 1.8584 -3.4254 40 1 8.3593 1.9176 -1.9166 41 1 10.2312 0.7979 -2.9456 42 1 9.6389 1.8000 -4.3079 43 1 8.9161 -1.7190 -2.9208 44 1 7.4952 -1.5627 -3.9888 45 1 5.9177 -1.8078 -1.1895 46 1 6.0041 -2.2577 -2.9100 47 1 3.7131 -2.5863 -2.0032 48 1 3.7352 -1.3378 -3.2715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602607413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:03 Heat of formation + Delta-G solvation = -96.042687 kcal Electronic energy + Delta-G solvation = -23183.338179 eV Core-core repulsion = 20042.765252 eV Total energy + Delta-G solvation = -3140.572928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.01881 -39.66322 -37.37524 -35.35539 -33.97305 -32.01654 -31.60953 -29.83223 -28.54872 -26.96819 -25.20977 -24.52646 -23.83119 -22.96736 -21.43279 -20.70464 -20.65026 -18.80658 -17.56461 -17.17662 -16.66206 -16.12273 -15.99080 -15.71689 -15.63752 -15.22765 -14.96428 -14.72289 -14.55635 -14.36318 -13.73218 -13.66764 -13.43282 -13.23152 -12.99954 -12.86785 -12.72521 -12.57820 -12.50481 -12.19356 -12.13826 -12.04150 -11.94135 -11.82121 -11.59571 -11.43390 -11.26279 -11.08416 -10.95925 -10.58839 -10.49049 -10.43233 -9.10519 -8.58309 -6.25974 1.51987 1.61720 1.78559 2.60605 2.97290 3.04739 3.25684 3.49538 3.59794 3.81048 3.90985 4.00270 4.16000 4.21367 4.26517 4.29660 4.32609 4.38077 4.44850 4.47436 4.52631 4.62704 4.63254 4.73148 4.75816 4.80632 4.82035 4.85855 4.88977 4.93054 4.96689 5.01857 5.10361 5.13181 5.20530 5.23610 5.24011 5.32177 5.42721 5.49629 5.57644 5.74532 5.93759 6.14868 6.23912 6.29518 6.34039 6.71665 7.54793 8.81996 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020656 B = 0.003733 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.240468 B = 7499.538895 C = 8141.138563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 H 0.050 0.950 4 C 0.035 3.965 5 C -0.604 4.604 6 H 0.046 0.954 7 C -0.043 4.043 8 N -0.943 5.943 9 Si 1.115 2.885 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.072 3.928 14 N -0.553 5.553 15 C 0.059 3.941 16 C -0.105 4.105 17 C -0.066 4.066 18 C -0.114 4.114 19 H 0.079 0.921 20 C -0.147 4.147 21 C 0.042 3.958 22 O -0.403 6.403 23 C 0.049 3.951 24 C -0.110 4.110 25 C 0.057 3.943 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.040 0.960 29 H -0.003 1.003 30 H -0.028 1.028 31 H 0.254 0.746 32 H 0.060 0.940 33 H 0.043 0.957 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.204 4.938 -17.277 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.089 4.089 3 H 0.068 0.932 4 C -0.002 4.002 5 C -0.642 4.642 6 H 0.065 0.935 7 C -0.239 4.239 8 N -0.582 5.582 9 Si 0.937 3.063 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.195 1.195 13 C -0.055 4.055 14 N -0.278 5.278 15 C -0.069 4.069 16 C -0.142 4.142 17 C -0.084 4.084 18 C -0.133 4.133 19 H 0.097 0.903 20 C -0.184 4.184 21 C -0.034 4.034 22 O -0.323 6.323 23 C -0.027 4.027 24 C -0.147 4.147 25 C -0.070 4.070 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.015 0.985 30 H -0.010 1.010 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.084 0.916 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.528 4.782 -15.406 18.735 hybrid contribution -0.529 -0.198 -1.798 1.885 sum 8.999 4.584 -17.204 19.949 Atomic orbital electron populations 1.21613 0.94992 1.00902 1.00872 1.20963 0.95358 0.98374 0.94231 0.93152 1.18976 0.94746 0.93357 0.93155 1.22544 1.37668 1.10150 0.93878 0.93535 1.27298 0.94296 0.97334 1.05014 1.70866 1.38250 1.16268 1.32783 0.82963 0.76825 0.74429 0.72052 1.20037 1.21059 1.19470 1.22060 0.87020 1.00027 0.96414 1.61746 1.09818 1.05545 1.50718 1.22065 0.96644 0.89644 0.98561 1.21588 0.93503 0.99744 0.99405 1.21131 0.93319 0.94858 0.99102 1.22540 0.95120 0.95753 0.99844 0.90284 1.23239 0.97588 0.96507 1.01077 1.23753 0.96645 0.87380 0.95665 1.88829 1.72564 1.32854 1.38059 1.23335 0.94560 0.93494 0.91357 1.21677 0.94021 0.97181 1.01868 1.22089 0.95796 0.95678 0.93455 0.93791 0.91563 0.94051 0.98462 1.00999 0.93699 0.92150 0.93913 0.94263 0.92319 0.93255 0.89987 0.90661 0.90135 0.89298 0.91627 0.87766 0.92056 0.89239 0.92807 0.89630 0.91618 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 8.91 71.98 0.64 -4.09 16 2 C -0.07 -2.92 2.35 -10.79 -0.03 -2.94 16 3 H 0.05 2.15 6.47 -2.39 -0.02 2.13 16 4 C 0.03 1.85 3.71 29.85 0.11 1.96 16 5 C -0.60 -35.21 8.47 25.60 0.22 -34.99 16 6 H 0.05 2.64 7.06 -2.91 -0.02 2.62 16 7 C -0.04 -2.56 5.46 84.65 0.46 -2.09 16 8 N -0.94 -60.49 13.65 21.45 0.29 -60.20 16 9 Si 1.12 51.91 29.90 68.60 2.05 53.96 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 C 0.07 2.48 4.36 86.31 0.38 2.86 16 14 N -0.55 -18.20 3.99 -896.36 -3.58 -21.78 16 15 C 0.06 1.69 5.30 86.32 0.46 2.15 16 16 C -0.10 -2.59 5.13 30.64 0.16 -2.43 16 17 C -0.07 -1.36 1.54 -10.71 -0.02 -1.37 16 18 C -0.11 -2.10 2.61 -9.81 -0.03 -2.13 16 19 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 20 C -0.15 -2.31 5.78 31.97 0.18 -2.12 16 21 C 0.04 0.65 7.72 72.75 0.56 1.22 16 22 O -0.40 -8.58 11.52 -148.98 -1.72 -10.30 16 23 C 0.05 0.90 6.94 72.35 0.50 1.41 16 24 C -0.11 -2.53 5.12 30.65 0.16 -2.37 16 25 C 0.06 1.53 5.44 86.32 0.47 2.00 16 26 H 0.04 1.78 7.12 -2.39 -0.02 1.76 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.00 -0.17 7.49 -2.39 -0.02 -0.19 16 30 H -0.03 -1.64 8.01 -2.38 -0.02 -1.66 16 31 H 0.25 16.63 7.22 -92.71 -0.67 15.96 16 32 H 0.06 2.12 7.87 -2.39 -0.02 2.10 16 33 H 0.04 1.27 8.06 -2.38 -0.02 1.25 16 34 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.93 6.41 -2.39 -0.02 1.91 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.70 7.29 -2.38 -0.02 1.68 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 1.25 7.67 -2.38 -0.02 1.23 16 40 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 1.56 6.48 -2.38 -0.02 1.54 16 45 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.09 1.58 6.73 -2.39 -0.02 1.57 16 47 H 0.07 1.81 7.96 -2.39 -0.02 1.79 16 48 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -68.64 358.79 2.27 -66.37 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.99 Total: 14.90 kcal Atomic # 6 Polarization: -47.18 SS G_CDS: 4.23 Total: -42.95 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -3.29 Total: -81.98 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -1.72 Total: -10.30 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 2.05 Total: 53.96 kcal Total: -68.64 2.27 -66.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602607413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.672 kcal (2) G-P(sol) polarization free energy of solvation -68.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds