Wall clock time and date at job start Tue Mar 31 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47300 * 2 1 4 4 C 1.53007 * 109.47238 * 239.99658 * 2 1 3 5 5 C 1.50705 * 109.46657 * 65.00298 * 4 2 1 6 6 H 1.08001 * 120.00023 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99552 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99791 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00156 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.46763 * 90.00096 * 9 7 5 11 11 H 1.48497 * 109.47096 * 210.00030 * 9 7 5 12 12 H 1.48497 * 109.47341 * 330.00496 * 9 7 5 13 13 C 1.52999 * 109.47185 * 119.99986 * 2 1 3 14 14 N 1.46902 * 109.47286 * 295.00112 * 13 2 1 15 15 C 1.46842 * 111.00131 * 169.99924 * 14 13 2 16 16 C 1.53045 * 109.52121 * 185.83852 * 15 14 13 17 17 C 1.53112 * 109.27751 * 300.81821 * 16 15 14 18 18 C 1.53005 * 109.52320 * 177.55916 * 17 16 15 19 19 H 1.08999 * 110.82748 * 296.48450 * 18 17 16 20 20 C 1.54807 * 110.90335 * 60.12652 * 18 17 16 21 21 C 1.54105 * 104.18504 * 139.08264 * 20 18 17 22 22 O 1.43746 * 107.42259 * 1.95340 * 21 20 18 23 23 C 1.44586 * 106.86832 * 333.67423 * 22 21 20 24 24 C 1.53123 * 109.21230 * 57.62661 * 17 16 15 25 25 C 1.46850 * 110.99927 * 294.21025 * 14 13 2 26 26 H 1.09001 * 109.46986 * 60.00476 * 1 2 3 27 27 H 1.09001 * 109.47300 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47144 * 300.00092 * 1 2 3 29 29 H 1.09001 * 109.47090 * 184.99980 * 4 2 1 30 30 H 1.08995 * 109.47046 * 305.00436 * 4 2 1 31 31 H 0.96991 * 120.00081 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47370 * 174.99689 * 13 2 1 33 33 H 1.09004 * 109.47431 * 54.99907 * 13 2 1 34 34 H 1.09001 * 109.46633 * 65.82552 * 15 14 13 35 35 H 1.08998 * 109.46543 * 305.85069 * 15 14 13 36 36 H 1.09002 * 109.50059 * 180.87587 * 16 15 14 37 37 H 1.09004 * 109.53560 * 60.78132 * 16 15 14 38 38 H 1.08993 * 109.53028 * 297.68676 * 17 16 15 39 39 H 1.08996 * 110.48875 * 20.40533 * 20 18 17 40 40 H 1.09000 * 110.48902 * 257.75407 * 20 18 17 41 41 H 1.09002 * 109.88076 * 121.45430 * 21 20 18 42 42 H 1.08996 * 109.87584 * 242.45546 * 21 20 18 43 43 H 1.08999 * 110.50225 * 281.37988 * 23 22 21 44 44 H 1.08994 * 110.77338 * 158.50734 * 23 22 21 45 45 H 1.08993 * 109.50471 * 62.31336 * 24 17 16 46 46 H 1.09000 * 109.50659 * 182.43556 * 24 17 16 47 47 H 1.08998 * 109.46096 * 294.17813 * 25 14 13 48 48 H 1.08998 * 109.45967 * 54.14666 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 1.6450 0.2771 -4.7994 9 14 2.9627 -1.9890 -3.9028 10 1 2.0234 -3.1334 -4.0189 11 1 3.8108 -1.9193 -5.1197 12 1 3.8251 -2.1758 -2.7084 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4457 15 6 1.9124 -0.7355 3.6667 16 6 1.3638 0.0218 4.8783 17 6 2.0395 1.3930 4.9656 18 6 1.4514 2.1789 6.1393 19 1 0.3915 2.3777 5.9804 20 6 1.6787 1.4298 7.4749 21 6 2.0594 2.5418 8.4716 22 8 1.9985 3.7923 7.7651 23 6 2.2331 3.4974 6.3692 24 6 1.7946 2.1593 3.6628 25 6 2.3292 1.3395 2.4863 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.1264 -0.7996 -1.2056 30 1 1.6054 -1.7198 -1.2951 31 1 1.8916 -0.0462 -5.6800 32 1 3.1263 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2952 34 1 2.9866 -0.8782 3.7835 35 1 1.4229 -1.7066 3.5934 36 1 1.5715 -0.5448 5.7860 37 1 0.2872 0.1528 4.7694 38 1 3.1111 1.2623 5.1154 39 1 2.4925 0.7115 7.3757 40 1 0.7637 0.9298 7.7924 41 1 1.3548 2.5513 9.3032 42 1 3.0701 2.3755 8.8442 43 1 3.2971 3.3501 6.1837 44 1 1.8405 4.2920 5.7350 45 1 0.7251 2.3249 3.5336 46 1 2.3098 3.1191 3.7027 47 1 3.4015 1.1870 2.6086 48 1 2.1425 1.8753 1.5557 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602607414.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:07 Heat of formation + Delta-G solvation = -72.547964 kcal Electronic energy + Delta-G solvation = -22839.334728 eV Core-core repulsion = 19699.780608 eV Total energy + Delta-G solvation = -3139.554120 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.18621 -38.70535 -35.97893 -33.87925 -32.12440 -31.23746 -30.56796 -29.15113 -27.42280 -25.81300 -23.80491 -23.63446 -22.18584 -21.87895 -20.59229 -19.82768 -18.82440 -16.82295 -16.74247 -16.36570 -15.58651 -15.31934 -14.94028 -14.47897 -14.19623 -13.93032 -13.91610 -13.62038 -13.37387 -13.20120 -12.79165 -12.30613 -12.25317 -12.18948 -11.86231 -11.63435 -11.57064 -11.29151 -11.21617 -11.15376 -10.95104 -10.77823 -10.63974 -10.49066 -10.28824 -10.26541 -9.95009 -9.72675 -9.62766 -9.35619 -9.02949 -8.50358 -8.04667 -6.00718 -3.97403 3.31881 3.39273 3.42735 3.64840 4.08056 4.17997 4.38578 4.47799 4.53954 4.72317 4.77104 4.92018 4.98246 5.10776 5.20979 5.32621 5.33404 5.36356 5.39788 5.44684 5.48553 5.55526 5.57123 5.62733 5.64252 5.72534 5.80626 5.85329 5.92522 6.00782 6.05485 6.09397 6.14571 6.32012 6.32205 6.46286 6.55683 6.63245 6.86550 7.06076 7.17168 7.29798 7.33571 7.40214 7.52466 7.84647 8.59184 9.05261 9.62355 11.12796 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040189 B = 0.002960 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.544163 B = 9456.625915 C = 9720.315837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.072 4.072 3 H 0.062 0.938 4 C -0.010 4.010 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.058 3.942 14 N -0.532 5.532 15 C 0.055 3.945 16 C -0.108 4.108 17 C -0.077 4.077 18 C -0.114 4.114 19 H 0.087 0.913 20 C -0.152 4.152 21 C 0.046 3.954 22 O -0.382 6.382 23 C 0.050 3.950 24 C -0.111 4.111 25 C 0.052 3.948 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.026 0.974 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.027 0.973 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.192 1.305 25.313 25.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 H 0.080 0.920 4 C -0.048 4.048 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.069 4.069 14 N -0.257 5.257 15 C -0.073 4.073 16 C -0.146 4.146 17 C -0.096 4.096 18 C -0.132 4.132 19 H 0.105 0.895 20 C -0.189 4.189 21 C -0.031 4.031 22 O -0.301 6.301 23 C -0.027 4.027 24 C -0.149 4.149 25 C -0.076 4.076 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.045 0.955 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.669 1.592 25.194 25.253 hybrid contribution 1.501 -1.329 -0.341 2.033 sum 2.170 0.263 24.853 24.949 Atomic orbital electron populations 1.21580 0.95305 1.00522 1.00655 1.21038 0.96315 0.99137 0.92617 0.91978 1.19625 0.95653 0.95894 0.93596 1.21132 1.35153 1.09556 0.89070 0.90830 1.25031 0.95691 0.96922 0.95975 1.69913 1.47297 1.39298 0.97986 0.86808 0.80649 0.84422 0.77552 1.20381 1.21522 1.19166 1.22327 0.97411 0.97240 0.89897 1.61933 1.58390 1.03588 1.01789 1.22056 0.98095 0.96964 0.90228 1.21627 1.01096 0.94933 0.96947 1.21185 0.99475 0.95130 0.93765 1.22780 1.01104 0.94946 0.94398 0.89460 1.23009 1.02610 0.98449 0.94850 1.23145 1.00836 0.83668 0.95482 1.88911 1.93160 1.28693 1.19306 1.23689 0.99226 0.97083 0.82654 1.21662 1.02341 0.97676 0.93231 1.22128 0.95223 0.90930 0.99309 0.92325 0.94342 0.93677 0.97042 0.97119 0.92854 0.95548 0.91381 0.95541 0.91003 0.91910 0.90994 0.91466 0.90530 0.90468 0.90121 0.92638 0.92161 0.88833 0.90860 0.91750 0.95459 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 2 C -0.07 -1.42 2.26 -90.62 -0.20 -1.62 16 3 H 0.06 1.25 6.22 -51.93 -0.32 0.93 16 4 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 5 C -0.51 -14.45 8.96 -34.44 -0.31 -14.76 16 6 H 0.07 2.23 7.30 -52.49 -0.38 1.85 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.04 13.96 55.43 0.77 -27.27 16 9 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 13 C 0.06 0.95 4.35 -3.82 -0.02 0.94 16 14 N -0.53 -7.37 4.11 -234.66 -0.96 -8.33 16 15 C 0.05 0.63 5.46 -3.83 -0.02 0.61 16 16 C -0.11 -1.00 5.10 -26.65 -0.14 -1.14 16 17 C -0.08 -0.68 1.67 -90.50 -0.15 -0.83 16 18 C -0.11 -0.91 2.66 -88.61 -0.24 -1.15 16 19 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 20 C -0.15 -1.06 5.66 -25.20 -0.14 -1.20 16 21 C 0.05 0.35 7.69 37.73 0.29 0.64 16 22 O -0.38 -3.99 11.54 -35.23 -0.41 -4.40 16 23 C 0.05 0.43 6.44 38.21 0.25 0.68 16 24 C -0.11 -1.14 5.20 -26.65 -0.14 -1.28 16 25 C 0.05 0.67 5.29 -3.83 -0.02 0.65 16 26 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.78 7.75 -51.93 -0.40 0.37 16 29 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 30 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.07 1.09 7.99 -51.93 -0.41 0.68 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.81 8.02 -51.93 -0.42 0.39 16 36 H 0.06 0.49 7.16 -51.93 -0.37 0.12 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 39 H 0.08 0.50 7.50 -51.93 -0.39 0.11 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.50 8.01 -51.93 -0.42 0.08 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.59 7.62 -51.93 -0.40 0.19 16 47 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 1.23 6.12 -51.93 -0.32 0.92 16 LS Contribution 357.80 15.07 5.39 5.39 Total: -1.00 -30.51 357.80 -9.77 -40.28 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -9.19 Total: -3.85 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -0.70 Total: -19.03 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.19 Total: -35.60 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.41 Total: -4.40 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.51 -9.77 -40.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602607414.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.267 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds