Wall clock time and date at job start Tue Mar 31 2020 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47321 * 2 1 4 4 C 1.53002 * 109.47120 * 120.00068 * 2 1 3 5 5 C 1.50689 * 109.47259 * 294.99763 * 4 2 1 6 6 H 1.08004 * 120.00039 * 0.27815 * 5 4 2 7 7 C 1.37878 * 120.00451 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99424 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00598 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46835 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47605 * 119.99423 * 9 7 5 12 12 H 1.48501 * 109.47248 * 240.00044 * 9 7 5 13 13 C 1.53000 * 109.46966 * 239.99888 * 2 1 3 14 14 N 1.46905 * 109.47389 * 174.79749 * 13 2 1 15 15 C 1.46845 * 110.99861 * 288.32535 * 14 13 2 16 16 C 1.53029 * 109.52286 * 174.15793 * 15 14 13 17 17 C 1.53114 * 109.28052 * 59.18042 * 16 15 14 18 18 C 1.53002 * 109.52441 * 182.43973 * 17 16 15 19 19 H 1.09001 * 110.45478 * 57.08112 * 18 17 16 20 20 C 1.54509 * 110.51033 * 179.67952 * 18 17 16 21 21 C 1.54478 * 104.06264 * 118.64547 * 20 18 17 22 22 O 1.44429 * 104.80324 * 23.97962 * 21 20 18 23 23 C 1.44425 * 105.27067 * 319.49031 * 22 21 20 24 24 C 1.53120 * 109.15692 * 302.34464 * 17 16 15 25 25 C 1.46838 * 111.00080 * 164.11315 * 14 13 2 26 26 H 1.09006 * 109.47240 * 185.42001 * 1 2 3 27 27 H 1.08998 * 109.46976 * 305.41340 * 1 2 3 28 28 H 1.08998 * 109.47380 * 65.41891 * 1 2 3 29 29 H 1.09003 * 109.46796 * 174.99494 * 4 2 1 30 30 H 1.09003 * 109.46823 * 55.00322 * 4 2 1 31 31 H 0.97005 * 119.99810 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47830 * 294.79961 * 13 2 1 33 33 H 1.09005 * 109.47217 * 54.79783 * 13 2 1 34 34 H 1.09008 * 109.46072 * 294.17470 * 15 14 13 35 35 H 1.09001 * 109.46291 * 54.13722 * 15 14 13 36 36 H 1.09002 * 109.50870 * 299.23465 * 16 15 14 37 37 H 1.09003 * 109.50316 * 179.12000 * 16 15 14 38 38 H 1.09001 * 109.58020 * 62.27917 * 17 16 15 39 39 H 1.09005 * 110.51312 * 237.29439 * 20 18 17 40 40 H 1.08999 * 110.51595 * 359.97438 * 20 18 17 41 41 H 1.09009 * 110.37118 * 142.80881 * 21 20 18 42 42 H 1.08994 * 110.37398 * 265.03220 * 21 20 18 43 43 H 1.09003 * 110.36752 * 281.67862 * 23 22 21 44 44 H 1.09002 * 110.36733 * 159.34787 * 23 22 21 45 45 H 1.08995 * 109.50557 * 297.71228 * 24 17 16 46 46 H 1.09001 * 109.53521 * 177.61364 * 24 17 16 47 47 H 1.08996 * 109.46408 * 305.85476 * 25 14 13 48 48 H 1.09003 * 109.46649 * 65.83490 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4765 6 1 1.0765 0.9720 2.3759 7 6 1.9933 -0.4017 3.7282 8 7 2.6765 -1.5188 3.8510 9 14 1.4986 0.5626 5.2496 10 1 0.7413 1.7737 4.8434 11 1 0.6452 -0.2871 6.1185 12 1 2.7165 0.9682 5.9963 13 6 2.0399 -0.7213 -1.2492 14 7 3.5036 -0.6135 -1.3138 15 6 3.9161 0.7545 -1.6524 16 6 5.4401 0.8648 -1.5681 17 6 6.0738 -0.1346 -2.5398 18 6 7.5975 -0.0720 -2.4162 19 1 7.9048 -0.2692 -1.3892 20 6 8.2609 -1.0787 -3.3825 21 6 9.1085 -0.1935 -4.3230 22 8 9.3633 1.0102 -3.5665 23 6 8.1228 1.3022 -2.8871 24 6 5.5900 -1.5459 -2.1955 25 6 4.0616 -1.5864 -2.2616 26 1 -0.3634 -1.0231 0.0971 27 1 -0.3633 0.5955 0.8375 28 1 -0.3634 0.4275 -0.9345 29 1 3.1263 -0.7995 1.2055 30 1 1.6054 -1.7199 1.2951 31 1 2.9244 -1.8414 4.7316 32 1 1.7547 -1.7723 -1.2040 33 1 1.6025 -0.2641 -2.1368 34 1 3.5902 0.9919 -2.6652 35 1 3.4619 1.4548 -0.9514 36 1 5.7656 0.6410 -0.5522 37 1 5.7471 1.8762 -1.8347 38 1 5.7807 0.1121 -3.5603 39 1 8.8980 -1.7721 -2.8335 40 1 7.5034 -1.6213 -3.9480 41 1 10.0459 -0.6918 -4.5704 42 1 8.5514 0.0376 -5.2308 43 1 7.4137 1.7645 -3.5739 44 1 8.3030 1.9531 -2.0315 45 1 5.9178 -1.8077 -1.1895 46 1 6.0041 -2.2576 -2.9098 47 1 3.7133 -2.5863 -2.0030 48 1 3.7352 -1.3379 -3.2715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602607416.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:12 Heat of formation + Delta-G solvation = -73.348434 kcal Electronic energy + Delta-G solvation = -23138.767029 eV Core-core repulsion = 19999.178198 eV Total energy + Delta-G solvation = -3139.588831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08387 -38.50854 -35.78630 -33.70433 -32.05401 -31.05572 -30.35074 -28.94530 -26.93620 -25.60543 -23.63997 -23.40938 -22.32833 -22.08481 -20.38219 -19.61892 -18.71847 -16.55319 -16.37734 -16.16192 -15.59851 -15.16055 -14.81437 -14.36524 -14.14570 -13.94057 -13.66231 -13.36734 -13.19782 -12.90892 -12.47667 -12.28337 -12.09033 -11.85218 -11.76100 -11.40168 -11.33727 -11.17991 -11.03784 -11.00030 -10.82849 -10.78820 -10.46438 -10.36741 -10.28391 -10.11510 -9.92137 -9.87731 -9.56538 -9.02490 -8.80782 -8.22357 -7.75976 -5.86980 -3.87133 3.36530 3.44204 3.47645 3.81755 4.25921 4.37950 4.53848 4.55269 4.70970 4.87171 4.94487 5.09641 5.13221 5.28385 5.38950 5.46565 5.48581 5.49919 5.53789 5.57979 5.64289 5.68924 5.73772 5.74882 5.79276 5.90147 5.96176 6.01532 6.07598 6.11596 6.21021 6.27788 6.31291 6.32283 6.43003 6.55355 6.57783 6.63403 7.01496 7.07226 7.33515 7.56976 7.61149 7.87858 8.09641 8.23367 8.59657 9.21138 9.75016 11.24158 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020488 B = 0.003724 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.294837 B = 7516.577430 C = 8162.171208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 H 0.055 0.945 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.052 0.948 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.884 3.116 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.065 3.935 14 N -0.524 5.524 15 C 0.058 3.942 16 C -0.113 4.113 17 C -0.076 4.076 18 C -0.115 4.115 19 H 0.086 0.914 20 C -0.152 4.152 21 C 0.044 3.956 22 O -0.380 6.380 23 C 0.049 3.951 24 C -0.111 4.111 25 C 0.058 3.942 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.027 0.973 29 H 0.033 0.967 30 H 0.008 0.992 31 H 0.257 0.743 32 H 0.066 0.934 33 H 0.016 0.984 34 H 0.021 0.979 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.432 1.562 -17.228 19.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 H 0.073 0.927 4 C 0.000 4.000 5 C -0.550 4.550 6 H 0.070 0.930 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.712 3.288 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.062 4.062 14 N -0.248 5.248 15 C -0.069 4.069 16 C -0.151 4.151 17 C -0.095 4.095 18 C -0.134 4.134 19 H 0.105 0.895 20 C -0.190 4.190 21 C -0.033 4.033 22 O -0.299 6.299 23 C -0.028 4.028 24 C -0.149 4.149 25 C -0.070 4.070 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.110 0.890 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 8.890 1.459 -16.629 18.912 hybrid contribution -0.837 0.474 0.159 0.975 sum 8.053 1.933 -16.470 18.435 Atomic orbital electron populations 1.21700 0.96566 1.01192 0.99529 1.21225 0.94072 0.99229 0.95696 0.92675 1.19037 0.97411 0.94375 0.89219 1.21361 1.33979 1.08249 0.91419 0.93015 1.24985 0.95546 0.95067 0.98844 1.69991 1.39345 1.21220 1.22922 0.86671 0.78201 0.80170 0.83735 1.19922 1.21247 1.21192 1.22243 0.85874 1.00804 0.97298 1.61792 1.10417 1.03923 1.48705 1.22061 0.95380 0.91135 0.98371 1.21663 0.94963 0.97925 1.00512 1.21225 0.92665 0.96380 0.99212 1.22597 0.95600 0.94585 1.00625 0.89515 1.23049 0.99510 0.98591 0.97851 1.23403 0.99896 0.85582 0.94412 1.89112 1.33229 1.43690 1.63841 1.23535 0.85832 0.96821 0.96573 1.21671 0.95025 0.95668 1.02502 1.22043 0.94859 0.96850 0.93272 0.93542 0.92074 0.95413 0.94878 0.97409 0.93374 0.91527 0.96547 0.96068 0.90041 0.90405 0.92014 0.91771 0.90692 0.90182 0.89437 0.92568 0.92251 0.89031 0.90606 0.91956 0.90923 0.96001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.91 37.16 0.33 -2.16 16 2 C -0.08 -1.70 2.35 -90.62 -0.21 -1.92 16 3 H 0.05 1.15 6.47 -51.93 -0.34 0.81 16 4 C 0.04 0.94 4.39 -27.89 -0.12 0.82 16 5 C -0.51 -14.44 8.48 -34.45 -0.29 -14.73 16 6 H 0.05 1.43 7.05 -52.48 -0.37 1.06 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 9 Si 0.88 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 C 0.07 1.13 4.36 -3.82 -0.02 1.12 16 14 N -0.52 -8.64 3.99 -234.67 -0.94 -9.58 16 15 C 0.06 0.86 5.30 -3.84 -0.02 0.84 16 16 C -0.11 -1.43 5.17 -26.66 -0.14 -1.57 16 17 C -0.08 -0.83 1.59 -90.50 -0.14 -0.97 16 18 C -0.12 -1.16 2.68 -89.06 -0.24 -1.40 16 19 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 20 C -0.15 -1.34 6.23 -25.16 -0.16 -1.49 16 21 C 0.04 0.39 7.63 37.93 0.29 0.68 16 22 O -0.38 -4.45 11.65 -35.23 -0.41 -4.86 16 23 C 0.05 0.50 6.33 37.93 0.24 0.74 16 24 C -0.11 -1.32 5.08 -26.65 -0.14 -1.46 16 25 C 0.06 0.79 5.44 -3.84 -0.02 0.77 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 1.23 7.11 -51.93 -0.37 0.86 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.92 7.63 -51.93 -0.40 0.53 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.07 1.17 7.87 -51.93 -0.41 0.76 16 33 H 0.02 0.26 8.06 -51.93 -0.42 -0.16 16 34 H 0.02 0.29 8.14 -51.92 -0.42 -0.13 16 35 H 0.08 1.32 6.41 -51.93 -0.33 0.98 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.06 0.68 7.55 -51.93 -0.39 0.28 16 38 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.64 6.44 -51.93 -0.33 0.31 16 41 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.57 7.82 -51.93 -0.41 0.16 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.62 6.61 -51.93 -0.34 0.28 16 47 H 0.07 1.01 7.96 -51.93 -0.41 0.60 16 48 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 360.28 15.07 5.43 5.43 Total: -1.00 -30.67 360.28 -10.09 -40.76 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -9.15 Total: -2.97 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -0.73 Total: -19.21 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.20 Total: -36.06 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.41 Total: -4.86 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.67 -10.09 -40.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602607416.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.589 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds