Wall clock time and date at job start Tue Mar 31 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.46798 * 240.00265 * 2 1 3 5 5 C 1.50701 * 109.47211 * 65.00508 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 C 1.52997 * 109.46903 * 120.00662 * 2 1 3 14 14 N 1.46908 * 109.46699 * 294.99532 * 13 2 1 15 15 C 1.46900 * 110.99509 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.46639 * 180.02562 * 15 14 13 17 17 C 1.52992 * 110.45882 * 298.84970 * 16 15 14 18 18 C 1.54510 * 110.51140 * 61.45854 * 16 15 14 19 19 C 1.54476 * 104.06285 * 118.64156 * 18 16 15 20 20 O 1.44423 * 104.80456 * 23.97825 * 19 18 16 21 21 C 1.44419 * 105.27469 * 319.48771 * 20 19 18 22 22 H 1.09005 * 110.37574 * 281.67969 * 21 20 19 23 23 C 1.53001 * 110.37113 * 159.34317 * 21 20 19 24 24 C 1.53004 * 117.49844 * 133.24327 * 23 21 20 25 25 C 1.52998 * 117.49868 * 64.62140 * 23 21 20 26 26 H 1.08990 * 109.47425 * 299.99608 * 1 2 3 27 27 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 28 28 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47211 * 304.99535 * 4 2 1 30 30 H 1.09007 * 109.46376 * 185.00077 * 4 2 1 31 31 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47572 * 54.99886 * 13 2 1 33 33 H 1.09000 * 109.47136 * 175.00019 * 13 2 1 34 34 H 1.00904 * 110.99864 * 56.05335 * 14 13 2 35 35 H 1.09001 * 109.47759 * 300.00110 * 15 14 13 36 36 H 1.08998 * 109.47513 * 60.00539 * 15 14 13 37 37 H 1.08995 * 109.47140 * 59.30050 * 17 16 15 38 38 H 1.09000 * 109.47140 * 179.30122 * 17 16 15 39 39 H 1.08995 * 109.47416 * 299.29792 * 17 16 15 40 40 H 1.08997 * 110.51234 * 237.28830 * 18 16 15 41 41 H 1.09004 * 110.50708 * 359.86161 * 18 16 15 42 42 H 1.08999 * 110.37491 * 142.81367 * 19 18 16 43 43 H 1.09004 * 110.37149 * 265.03410 * 19 18 16 44 44 H 1.09003 * 115.55212 * 278.94578 * 23 21 20 45 45 H 1.09003 * 117.49775 * 359.97438 * 24 23 21 46 46 H 1.09001 * 117.50154 * 145.02005 * 24 23 21 47 47 H 1.09003 * 117.49472 * 214.98118 * 25 23 21 48 48 H 1.08993 * 117.50180 * 359.97172 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0801 0.9744 -2.3756 7 6 1.9879 -0.4048 -3.7286 8 7 2.6711 -1.5218 -3.8515 9 14 1.4871 0.5560 -5.2502 10 1 2.5507 1.5352 -5.5897 11 1 1.2959 -0.3807 -6.3865 12 1 0.2167 1.2775 -4.9843 13 6 2.0400 -0.7214 1.2491 14 7 1.6514 0.0373 2.4456 15 6 2.1257 -0.6268 3.6671 16 6 1.7023 0.1907 4.8892 17 6 2.3222 1.5885 4.8385 18 6 0.1622 0.2840 4.9710 19 6 -0.1844 -0.3972 6.3134 20 8 1.0165 -0.2805 7.1073 21 6 2.1040 -0.5359 6.1920 22 1 2.2063 -1.6063 6.0134 23 6 3.4099 0.0407 6.7424 24 6 4.6499 -0.8548 6.7021 25 6 3.9592 -0.5639 8.0361 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6054 -1.7198 -1.2952 30 1 3.1264 -0.7994 -1.2056 31 1 2.9146 -1.8469 -4.7323 32 1 1.6054 -1.7199 1.2950 33 1 3.1263 -0.7996 1.2055 34 1 0.6528 0.1792 2.4753 35 1 1.6920 -1.6248 3.7300 36 1 3.2126 -0.7040 3.6400 37 1 1.9987 2.0966 3.9301 38 1 2.0005 2.1604 5.7089 39 1 3.4089 1.5044 4.8404 40 1 -0.1575 1.3260 4.9777 41 1 -0.2975 -0.2502 4.1394 42 1 -1.0120 0.1200 6.7989 43 1 -0.4350 -1.4459 6.1533 44 1 3.5553 1.1094 6.5849 45 1 4.5351 -1.8549 6.2839 46 1 5.6113 -0.3753 6.5181 47 1 4.4662 0.1070 8.7295 48 1 3.3901 -1.3721 8.4953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602610619.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:58 Heat of formation + Delta-G solvation = -41.806643 kcal Electronic energy + Delta-G solvation = -22767.218128 eV Core-core repulsion = 19628.997051 eV Total energy + Delta-G solvation = -3138.221076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.49797 -37.14408 -36.75838 -34.89232 -32.81779 -31.37108 -29.98644 -27.14467 -26.73905 -26.09043 -24.26837 -23.30629 -22.47840 -22.16934 -20.69938 -19.27210 -18.80318 -16.82639 -16.46827 -16.14796 -15.51134 -15.50528 -14.89790 -14.57947 -14.18766 -14.08048 -13.80289 -13.58431 -13.20902 -12.64080 -12.57045 -12.22723 -12.16552 -11.95861 -11.76048 -11.64706 -11.52974 -11.27859 -11.00272 -10.90796 -10.74291 -10.71993 -10.64872 -10.45147 -10.33699 -10.26920 -10.12084 -9.85273 -9.72122 -9.14703 -8.95881 -8.32930 -8.12830 -5.97625 -3.98806 3.32990 3.33268 3.39295 3.42337 3.96803 4.14618 4.30619 4.47628 4.61115 4.67304 4.79127 4.81314 4.83903 5.04215 5.10931 5.18680 5.24332 5.38202 5.44581 5.49180 5.52630 5.57729 5.66178 5.68922 5.73834 5.78641 5.82649 5.89912 5.91067 6.00882 6.03713 6.04835 6.10550 6.25443 6.36053 6.46056 6.55250 6.67506 6.93757 7.10057 7.16939 7.36533 7.64737 7.70143 7.86097 8.02659 8.46476 9.07616 9.64645 11.13924 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030557 B = 0.002977 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.098575 B = 9404.637440 C = 9870.899327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.686 5.686 15 C 0.072 3.928 16 C -0.080 4.080 17 C -0.128 4.128 18 C -0.149 4.149 19 C 0.044 3.956 20 O -0.367 6.367 21 C 0.114 3.886 22 H 0.066 0.934 23 C -0.154 4.154 24 C -0.173 4.173 25 C -0.172 4.172 26 H 0.030 0.970 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.022 0.978 33 H 0.067 0.933 34 H 0.336 0.664 35 H 0.024 0.976 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.120 0.880 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.595 1.886 22.723 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.318 5.318 15 C -0.057 4.057 16 C -0.081 4.081 17 C -0.185 4.185 18 C -0.187 4.187 19 C -0.033 4.033 20 O -0.286 6.286 21 C 0.056 3.944 22 H 0.084 0.916 23 C -0.171 4.171 24 C -0.210 4.210 25 C -0.209 4.209 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.156 0.844 35 H 0.042 0.958 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.138 0.862 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.112 0.888 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.970 2.236 22.779 22.909 hybrid contribution -0.907 -0.483 -1.162 1.551 sum -1.876 1.753 21.617 21.769 Atomic orbital electron populations 1.21738 0.96769 1.00365 1.00224 1.21216 0.94781 1.00101 0.94160 0.91629 1.19108 0.96125 0.95334 0.90378 1.21238 1.34687 1.08189 0.90980 0.92575 1.25019 0.95366 0.95069 0.99101 1.69963 1.39193 1.21175 1.23362 0.86632 0.78942 0.79792 0.82859 1.20708 1.21333 1.19926 1.22138 1.00366 0.94357 0.89560 1.60573 1.19528 1.50477 1.01252 1.21914 1.00734 0.94004 0.89078 1.21873 0.94667 0.97405 0.94155 1.21794 1.00490 0.94253 1.01926 1.23080 0.95462 1.02340 0.97786 1.23376 0.88783 0.99807 0.91319 1.89134 1.14728 1.92172 1.32584 1.22524 0.86472 0.97635 0.87809 0.91580 1.22445 0.92696 0.99898 1.02106 1.22980 0.96131 1.00723 1.01145 1.22850 1.03601 1.03606 0.90849 0.95064 0.91854 0.94091 0.96804 0.96684 0.93100 0.95978 0.91477 0.84401 0.95754 0.90723 0.90991 0.93112 0.92213 0.90143 0.90678 0.89192 0.92571 0.86222 0.88739 0.88381 0.88839 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.77 37.16 0.33 -2.13 16 2 C -0.08 -1.69 2.55 -90.62 -0.23 -1.92 16 3 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.32 8.41 -34.44 -0.29 -14.61 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.06 1.10 5.14 -3.82 -0.02 1.08 16 14 N -0.69 -9.64 5.84 -113.77 -0.66 -10.31 16 15 C 0.07 0.87 4.47 -3.82 -0.02 0.85 16 16 C -0.08 -0.84 0.75 -152.94 -0.12 -0.96 16 17 C -0.13 -1.35 6.85 37.15 0.25 -1.10 16 18 C -0.15 -1.44 5.87 -25.16 -0.15 -1.59 16 19 C 0.04 0.41 7.63 37.93 0.29 0.70 16 20 O -0.37 -4.22 11.33 -35.23 -0.40 -4.62 16 21 C 0.11 1.18 2.92 -25.95 -0.08 1.11 16 22 H 0.07 0.69 7.68 -51.93 -0.40 0.30 16 23 C -0.15 -1.47 4.67 -90.62 -0.42 -1.89 16 24 C -0.17 -1.46 10.19 -26.73 -0.27 -1.74 16 25 C -0.17 -1.50 10.24 -26.73 -0.27 -1.77 16 26 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 27 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.34 4.51 5.33 -39.29 -0.21 4.30 16 35 H 0.02 0.29 8.11 -51.93 -0.42 -0.13 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.85 7.69 -51.93 -0.40 0.45 16 38 H 0.05 0.51 7.88 -51.93 -0.41 0.10 16 39 H 0.06 0.62 6.68 -51.93 -0.35 0.27 16 40 H 0.08 0.76 7.73 -51.93 -0.40 0.36 16 41 H 0.07 0.73 6.66 -51.93 -0.35 0.38 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.12 1.14 5.59 -51.93 -0.29 0.85 16 45 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 46 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -29.66 367.81 -9.95 -39.61 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -8.93 Total: 1.25 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -1.22 Total: -21.89 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.07 Total: -36.57 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.40 Total: -4.62 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.66 -9.95 -39.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602610619.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.199 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds