Wall clock time and date at job start Tue Mar 31 2020 06:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 H 1.07991 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99853 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99798 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00090 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47175 * 90.00353 * 9 7 5 11 11 H 1.48507 * 109.47269 * 210.00434 * 9 7 5 12 12 H 1.48501 * 109.47497 * 330.00323 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 N 1.46904 * 109.47486 * 295.00613 * 13 2 1 15 15 C 1.46894 * 111.00353 * 179.97438 * 14 13 2 16 16 C 1.52993 * 109.47281 * 179.97438 * 15 14 13 17 17 C 1.53002 * 110.43892 * 59.29916 * 16 15 14 18 18 C 1.54817 * 110.48746 * 296.75448 * 16 15 14 19 19 C 1.55233 * 101.98705 * 220.51640 * 18 16 15 20 20 O 1.44376 * 103.56236 * 36.88035 * 19 18 16 21 21 C 1.43747 * 106.98021 * 320.00903 * 20 19 18 22 22 H 1.09004 * 109.87865 * 145.93537 * 21 20 19 23 23 C 1.52998 * 109.88086 * 267.09160 * 21 20 19 24 24 C 1.52999 * 117.49533 * 6.57546 * 23 21 20 25 25 C 1.53003 * 117.49686 * 297.91651 * 23 21 20 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 30 30 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 31 31 H 0.96997 * 120.00076 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.47194 * 55.00274 * 13 2 1 33 33 H 1.08997 * 109.47756 * 174.99755 * 13 2 1 34 34 H 1.00906 * 110.99364 * 303.95285 * 14 13 2 35 35 H 1.09002 * 109.47086 * 300.00088 * 15 14 13 36 36 H 1.09005 * 109.47157 * 59.99929 * 15 14 13 37 37 H 1.09006 * 109.47130 * 60.69619 * 17 16 15 38 38 H 1.08990 * 109.47431 * 180.70034 * 17 16 15 39 39 H 1.09004 * 109.46505 * 300.70448 * 17 16 15 40 40 H 1.08994 * 110.90977 * 338.64152 * 18 16 15 41 41 H 1.08998 * 110.90539 * 102.24698 * 18 16 15 42 42 H 1.08998 * 110.52091 * 278.38564 * 19 18 16 43 43 H 1.08996 * 110.77615 * 155.50458 * 19 18 16 44 44 H 1.08987 * 115.54901 * 152.24626 * 23 21 20 45 45 H 1.08993 * 117.50623 * 0.02562 * 24 23 21 46 46 H 1.09002 * 117.49438 * 145.02177 * 24 23 21 47 47 H 1.08996 * 117.49766 * 214.97668 * 25 23 21 48 48 H 1.09000 * 117.50238 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9925 -0.4023 -3.7283 8 7 1.6450 0.2771 -4.7994 9 14 2.9629 -1.9888 -3.9027 10 1 2.0237 -3.1333 -4.0189 11 1 3.8111 -1.9191 -5.1197 12 1 3.8253 -2.1755 -2.7083 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.1247 -0.6270 3.6673 16 6 1.7023 0.1910 4.8892 17 6 0.1794 0.3296 4.9390 18 6 2.3728 1.5863 4.8654 19 6 2.7521 1.7872 6.3572 20 8 3.1436 0.4660 6.7879 21 6 2.2271 -0.4615 6.1829 22 1 2.7436 -1.3916 5.9456 23 6 1.0623 -0.7384 7.1355 24 6 0.9884 0.0892 8.4202 25 6 1.3898 -1.3867 8.4821 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 3.1263 -0.7994 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 1.8923 -0.0458 -5.6799 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2057 34 1 1.9881 0.9874 2.3967 35 1 1.6904 -1.6248 3.7297 36 1 3.2116 -0.7049 3.6406 37 1 -0.2732 -0.6593 5.0133 38 1 -0.1031 0.9246 5.8074 39 1 -0.1704 0.8219 4.0316 40 1 3.2624 1.5797 4.2356 41 1 1.6693 2.3503 4.5345 42 1 1.8911 2.1372 6.9266 43 1 3.5840 2.4848 6.4540 44 1 0.1213 -1.0142 6.6597 45 1 1.7693 0.8312 8.5866 46 1 -0.0013 0.3575 8.7898 47 1 0.6640 -2.0887 8.8924 48 1 2.4350 -1.6164 8.6892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602610621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:00 Heat of formation + Delta-G solvation = -54.802527 kcal Electronic energy + Delta-G solvation = -22841.675792 eV Core-core repulsion = 19702.891172 eV Total energy + Delta-G solvation = -3138.784620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.50978 -38.45268 -37.06840 -36.25269 -34.58431 -33.10215 -30.69672 -29.47913 -27.73310 -27.26389 -25.52567 -24.11689 -23.59235 -23.15910 -21.22434 -20.82262 -19.84249 -18.91898 -17.70665 -17.13304 -16.55827 -16.44312 -16.07570 -15.78646 -15.47422 -15.40918 -14.81367 -14.60948 -14.34776 -14.07813 -13.97894 -13.50814 -13.44724 -13.16384 -13.08413 -12.81002 -12.72863 -12.41889 -12.28834 -12.21783 -12.13767 -11.83771 -11.73842 -11.60579 -11.48276 -11.38029 -11.19270 -11.13086 -10.98659 -10.77278 -10.73624 -10.51982 -9.27295 -8.26023 -6.28085 1.35664 1.37087 1.48712 2.37503 2.86680 2.96319 3.09276 3.21290 3.58704 3.75517 3.82562 4.08822 4.10375 4.13936 4.17150 4.25028 4.30737 4.35401 4.48063 4.51348 4.58911 4.72663 4.79125 4.81488 4.84739 4.87492 4.91032 4.93404 4.95983 4.98824 5.06883 5.08984 5.11089 5.21296 5.24842 5.33171 5.36056 5.41156 5.43956 5.54958 5.56615 5.72377 5.73969 5.99958 6.11061 6.35342 6.51104 6.79740 7.35437 8.90770 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035635 B = 0.002942 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.555542 B = 9513.897786 C = 9583.377612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.068 4.068 3 H 0.049 0.951 4 C -0.008 4.008 5 C -0.517 4.517 6 H 0.035 0.965 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.248 1.248 13 C 0.075 3.925 14 N -0.678 5.678 15 C 0.075 3.925 16 C -0.073 4.073 17 C -0.121 4.121 18 C -0.146 4.146 19 C 0.045 3.955 20 O -0.387 6.387 21 C 0.113 3.887 22 H 0.089 0.911 23 C -0.180 4.180 24 C -0.170 4.170 25 C -0.179 4.179 26 H 0.042 0.958 27 H 0.025 0.975 28 H 0.068 0.932 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.264 0.736 32 H 0.070 0.930 33 H 0.023 0.977 34 H 0.341 0.659 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.126 0.874 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 -1.308 28.212 28.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.045 4.045 5 C -0.555 4.555 6 H 0.054 0.946 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.172 1.172 13 C -0.055 4.055 14 N -0.309 5.309 15 C -0.054 4.054 16 C -0.074 4.074 17 C -0.178 4.178 18 C -0.184 4.184 19 C -0.031 4.031 20 O -0.306 6.306 21 C 0.055 3.945 22 H 0.107 0.893 23 C -0.198 4.198 24 C -0.207 4.207 25 C -0.216 4.216 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.159 0.841 35 H 0.092 0.908 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.116 0.884 44 H 0.144 0.856 45 H 0.111 0.889 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.427 -1.647 28.215 28.266 hybrid contribution 1.198 -0.203 -1.079 1.625 sum 0.772 -1.850 27.136 27.209 Atomic orbital electron populations 1.21485 0.94909 1.00635 1.00114 1.20866 0.96551 0.98367 0.92952 0.93235 1.19575 0.95761 0.95767 0.93441 1.21459 1.34213 1.08665 0.91209 0.94646 1.25998 0.97047 1.00926 0.95573 1.70070 1.49152 1.41621 0.98700 0.85696 0.79353 0.79633 0.78171 1.19305 1.21231 1.17180 1.21895 0.96825 0.97602 0.89137 1.60434 1.63886 1.05774 1.00819 1.21969 0.96740 0.97920 0.88801 1.21790 0.97615 0.94844 0.93146 1.21773 0.92366 1.01840 1.01861 1.23269 1.00952 0.96829 0.97328 1.23703 1.00909 0.85118 0.93418 1.88864 1.53123 1.16892 1.71751 1.22264 0.89054 0.92940 0.90280 0.89327 1.23080 1.00614 1.06307 0.89847 1.22940 1.02912 0.94463 1.00379 1.22965 1.02144 0.96142 1.00328 0.93884 0.95599 0.91353 0.96802 0.96578 0.92700 0.91194 0.95921 0.84066 0.90841 0.95727 0.92264 0.92079 0.92076 0.91377 0.88969 0.91194 0.88392 0.85617 0.88910 0.88127 0.87986 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.22 8.89 71.98 0.64 -3.58 16 2 C -0.07 -2.59 2.48 -10.80 -0.03 -2.61 16 3 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.01 -0.35 3.52 29.85 0.10 -0.25 16 5 C -0.52 -29.79 8.96 25.60 0.23 -29.56 16 6 H 0.04 2.24 7.30 -2.92 -0.02 2.22 16 7 C 0.00 0.03 5.47 84.66 0.46 0.50 16 8 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 9 Si 0.95 44.80 27.47 68.60 1.88 46.68 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 12 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 13 C 0.07 2.22 5.07 86.30 0.44 2.66 16 14 N -0.68 -16.23 5.22 -513.89 -2.68 -18.92 16 15 C 0.07 1.52 4.35 86.30 0.38 1.90 16 16 C -0.07 -1.24 0.77 -51.19 -0.04 -1.28 16 17 C -0.12 -1.96 6.90 71.98 0.50 -1.46 16 18 C -0.15 -2.35 5.35 31.98 0.17 -2.17 16 19 C 0.04 0.69 7.13 72.75 0.52 1.21 16 20 O -0.39 -7.68 9.92 -148.98 -1.48 -9.15 16 21 C 0.11 1.98 3.49 30.97 0.11 2.09 16 22 H 0.09 1.64 7.69 -2.39 -0.02 1.62 16 23 C -0.18 -2.73 4.38 -10.79 -0.05 -2.77 16 24 C -0.17 -2.44 9.28 30.62 0.28 -2.15 16 25 C -0.18 -2.63 10.22 30.62 0.31 -2.32 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.02 1.09 6.95 -2.39 -0.02 1.08 16 28 H 0.07 2.18 7.75 -2.38 -0.02 2.16 16 29 H 0.01 0.63 7.20 -2.39 -0.02 0.62 16 30 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 31 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 32 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.34 7.94 7.73 -89.69 -0.69 7.24 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.02 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.06 0.94 6.78 -2.38 -0.02 0.92 16 38 H 0.06 0.88 7.37 -2.39 -0.02 0.86 16 39 H 0.06 1.15 7.63 -2.39 -0.02 1.13 16 40 H 0.07 1.19 7.77 -2.39 -0.02 1.17 16 41 H 0.09 1.36 7.86 -2.39 -0.02 1.34 16 42 H 0.07 0.96 7.06 -2.39 -0.02 0.94 16 43 H 0.10 1.31 8.14 -2.39 -0.02 1.30 16 44 H 0.13 1.76 5.64 -2.39 -0.01 1.75 16 45 H 0.09 1.48 6.18 -2.39 -0.01 1.47 16 46 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -64.65 361.82 2.21 -62.43 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.16 Total: 18.97 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 4.03 Total: -39.81 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -2.38 Total: -79.12 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -1.48 Total: -9.15 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Total: -64.65 2.21 -62.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602610621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.630 kcal (2) G-P(sol) polarization free energy of solvation -64.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds