Wall clock time and date at job start Tue Mar 31 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46346 * 2 1 4 4 C 1.52994 * 109.47500 * 120.00389 * 2 1 3 5 5 C 1.50699 * 109.47132 * 294.99944 * 4 2 1 6 6 H 1.07997 * 120.00142 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00198 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00488 * 180.02562 * 7 5 4 9 9 Si 1.86810 * 119.99607 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47147 * 89.99858 * 9 7 5 11 11 H 1.48502 * 109.46935 * 209.99853 * 9 7 5 12 12 H 1.48497 * 109.47039 * 329.99841 * 9 7 5 13 13 C 1.53002 * 109.46813 * 240.00713 * 2 1 3 14 14 N 1.46901 * 109.47055 * 64.99627 * 13 2 1 15 15 C 1.46847 * 111.00144 * 66.04768 * 14 13 2 16 16 C 1.53044 * 109.51335 * 185.83239 * 15 14 13 17 17 C 1.53117 * 109.27792 * 300.82256 * 16 15 14 18 18 C 1.53127 * 109.15989 * 57.65607 * 17 16 15 19 19 H 1.08997 * 109.50037 * 62.28538 * 18 17 16 20 20 O 1.42898 * 109.50132 * 182.36426 * 18 17 16 21 21 C 1.42899 * 113.99965 * 269.99971 * 20 18 17 22 22 C 1.53002 * 109.47325 * 180.02562 * 21 20 18 23 23 C 1.52995 * 117.50258 * 243.75081 * 22 21 20 24 24 C 1.52996 * 117.50142 * 175.08489 * 22 21 20 25 25 C 1.46830 * 110.98168 * 190.26186 * 14 13 2 26 26 H 1.09004 * 109.46729 * 299.99409 * 1 2 3 27 27 H 1.08989 * 109.47500 * 59.99584 * 1 2 3 28 28 H 1.09006 * 109.46859 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47312 * 55.00181 * 4 2 1 30 30 H 1.08998 * 109.47188 * 174.99692 * 4 2 1 31 31 H 0.96998 * 120.00347 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47028 * 304.99472 * 13 2 1 33 33 H 1.08996 * 109.47036 * 184.99264 * 13 2 1 34 34 H 1.09002 * 109.46448 * 65.81961 * 15 14 13 35 35 H 1.08994 * 109.45958 * 305.84326 * 15 14 13 36 36 H 1.09001 * 109.49858 * 60.76701 * 16 15 14 37 37 H 1.09002 * 109.49779 * 180.84687 * 16 15 14 38 38 H 1.08997 * 109.52073 * 177.56286 * 17 16 15 39 39 H 1.09004 * 109.52347 * 297.75632 * 17 16 15 40 40 H 1.09004 * 109.47241 * 300.00282 * 21 20 18 41 41 H 1.08998 * 109.47153 * 59.99955 * 21 20 18 42 42 H 1.09008 * 115.54531 * 29.41765 * 22 21 20 43 43 H 1.09002 * 117.49505 * 359.97438 * 23 22 21 44 44 H 1.08997 * 117.50471 * 145.01415 * 23 22 21 45 45 H 1.08995 * 117.50228 * 214.98085 * 24 22 21 46 46 H 1.08997 * 117.49489 * 359.97438 * 24 22 21 47 47 H 1.08995 * 109.46742 * 54.13906 * 25 14 13 48 48 H 1.09004 * 109.46459 * 294.16736 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6415 0.0569 2.4765 6 1 1.0801 0.9740 2.3758 7 6 1.9926 -0.4024 3.7282 8 7 1.6444 0.2764 4.7994 9 14 2.9631 -1.9891 3.9025 10 1 4.4165 -1.6856 3.8788 11 1 2.6149 -2.6434 5.1894 12 1 2.6291 -2.8996 2.7780 13 6 2.0400 -0.7211 -1.2494 14 7 1.6513 0.0377 -2.4457 15 6 2.3337 1.3372 -2.4894 16 6 1.7977 2.1567 -3.6656 17 6 2.0382 1.3887 -4.9681 18 6 1.3579 0.0198 -4.8773 19 1 0.2821 0.1549 -4.7654 20 8 1.6239 -0.7250 -6.0675 21 6 0.6583 -0.5308 -7.1027 22 6 1.0412 -1.3723 -8.3218 23 6 1.3889 -0.6284 -9.6128 24 6 0.0668 -1.3918 -9.5012 25 6 1.9065 -0.7378 -3.6661 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 1.6056 -1.7199 1.2950 30 1 3.1264 -0.7995 1.2054 31 1 1.8917 -0.0466 5.6800 32 1 1.6054 -1.7197 -1.2953 33 1 3.1263 -0.7992 -1.2058 34 1 3.4052 1.1808 -2.6141 35 1 2.1510 1.8748 -1.5590 36 1 0.7288 2.3253 -3.5344 37 1 2.3151 3.1153 -3.7068 38 1 1.6193 1.9489 -5.8040 39 1 3.1093 1.2537 -5.1191 40 1 -0.3248 -0.8368 -6.7448 41 1 0.6315 0.5225 -7.3817 42 1 1.5891 -2.2897 -8.1064 43 1 1.3444 0.4606 -9.5937 44 1 2.1652 -1.0564 -10.2469 45 1 -0.0262 -2.3217 -10.0620 46 1 -0.8474 -0.8054 -9.4083 47 1 1.4139 -1.7070 -3.5903 48 1 2.9800 -0.8845 -3.7853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602620717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:11 Heat of formation + Delta-G solvation = -39.716069 kcal Electronic energy + Delta-G solvation = -22423.595883 eV Core-core repulsion = 19285.465461 eV Total energy + Delta-G solvation = -3138.130422 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.62501 -38.21283 -36.77112 -35.11640 -32.76660 -31.62804 -30.17909 -27.52788 -27.06525 -26.05421 -23.54441 -22.91948 -22.75194 -21.65374 -21.05614 -19.78587 -18.85426 -17.19692 -16.76564 -16.17812 -15.48519 -15.32596 -15.02072 -14.73968 -14.34489 -14.16709 -13.74082 -13.50594 -13.30403 -13.13230 -12.84331 -12.58476 -12.24032 -11.94431 -11.72157 -11.58815 -11.55458 -11.18593 -11.10396 -10.93429 -10.89671 -10.84103 -10.65266 -10.55971 -10.37462 -10.29150 -9.86915 -9.60513 -9.54463 -9.34630 -9.02452 -8.49387 -8.09060 -5.99882 -3.96572 3.12572 3.32957 3.40569 3.44546 3.50404 4.18274 4.46765 4.48874 4.51772 4.69305 4.69774 4.76186 4.96132 4.99896 5.09492 5.22950 5.25613 5.29032 5.33761 5.35092 5.49957 5.50447 5.56493 5.60643 5.65820 5.71547 5.80267 5.83807 5.88161 5.88880 6.00330 6.04545 6.13511 6.25938 6.31840 6.45107 6.62593 6.87151 7.03714 7.06627 7.17348 7.28013 7.32581 7.38535 7.53421 7.85328 8.59830 9.05984 9.63203 11.13524 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035083 B = 0.002815 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.918794 B = 9945.220377 C =10269.198247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.072 4.072 3 H 0.062 0.938 4 C -0.010 4.010 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.060 3.940 14 N -0.531 5.531 15 C 0.048 3.952 16 C -0.114 4.114 17 C -0.140 4.140 18 C 0.095 3.905 19 H 0.069 0.931 20 O -0.382 6.382 21 C 0.095 3.905 22 C -0.152 4.152 23 C -0.178 4.178 24 C -0.175 4.175 25 C 0.061 3.939 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.016 0.984 30 H 0.008 0.992 31 H 0.262 0.738 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.031 0.969 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.113 0.887 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.078 0.922 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.176 -0.468 -26.887 26.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 H 0.081 0.919 4 C -0.048 4.048 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.067 4.067 14 N -0.257 5.257 15 C -0.079 4.079 16 C -0.151 4.151 17 C -0.178 4.178 18 C 0.037 3.963 19 H 0.087 0.913 20 O -0.300 6.300 21 C 0.018 3.982 22 C -0.170 4.170 23 C -0.215 4.215 24 C -0.212 4.212 25 C -0.068 4.068 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.131 0.869 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.096 0.904 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.509 -0.513 -26.696 26.744 hybrid contribution 1.267 -0.840 0.207 1.535 sum -0.242 -1.353 -26.489 26.525 Atomic orbital electron populations 1.21588 0.95280 1.00584 1.00659 1.21043 0.96352 0.99156 0.92532 0.91928 1.19625 0.95370 0.96271 0.93526 1.21122 1.35227 1.09481 0.89056 0.90829 1.25031 0.95741 0.96884 0.95980 1.69910 1.47267 1.39319 0.97989 0.86812 0.80584 0.84598 0.77470 1.20469 1.21504 1.19050 1.22335 0.97657 0.97249 0.89431 1.61836 1.58570 1.03748 1.01497 1.22200 0.95491 0.90782 0.99469 1.21542 1.02230 0.97924 0.93450 1.22079 1.01507 0.96075 0.98107 1.22047 0.99394 0.90569 0.84242 0.91301 1.87851 1.49712 1.68570 1.23899 1.22003 0.91521 0.97689 0.86967 1.22158 1.04282 1.01876 0.88718 1.23077 0.98853 0.99279 1.00324 1.22984 0.94175 1.02813 1.01243 1.21959 0.99194 0.96873 0.88727 0.92268 0.93705 0.94272 0.96618 0.97416 0.92860 0.91177 0.95251 0.95071 0.89423 0.90999 0.91286 0.92112 0.91519 0.92850 0.93330 0.86865 0.88714 0.88657 0.88412 0.88647 0.90369 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 2 C -0.07 -1.42 2.26 -90.62 -0.21 -1.62 16 3 H 0.06 1.26 6.23 -51.93 -0.32 0.94 16 4 C -0.01 -0.24 3.52 -27.89 -0.10 -0.34 16 5 C -0.51 -14.44 8.96 -34.44 -0.31 -14.75 16 6 H 0.07 2.23 7.30 -52.49 -0.38 1.85 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.04 13.96 55.43 0.77 -27.27 16 9 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 13 C 0.06 1.00 4.35 -3.82 -0.02 0.98 16 14 N -0.53 -7.66 4.11 -234.68 -0.96 -8.62 16 15 C 0.05 0.65 5.30 -3.83 -0.02 0.63 16 16 C -0.11 -1.25 6.09 -26.65 -0.16 -1.41 16 17 C -0.14 -1.48 5.62 -26.61 -0.15 -1.63 16 18 C 0.10 1.10 2.77 -26.65 -0.07 1.03 16 19 H 0.07 0.79 7.79 -51.93 -0.40 0.39 16 20 O -0.38 -4.47 9.99 -35.23 -0.35 -4.83 16 21 C 0.09 0.87 6.03 37.16 0.22 1.10 16 22 C -0.15 -1.26 6.05 -90.62 -0.55 -1.80 16 23 C -0.18 -1.24 10.18 -26.69 -0.27 -1.51 16 24 C -0.18 -1.14 10.26 -26.69 -0.27 -1.41 16 25 C 0.06 0.79 5.11 -3.84 -0.02 0.77 16 26 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 27 H 0.04 0.77 7.75 -51.94 -0.40 0.37 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 30 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.07 1.14 7.98 -51.93 -0.41 0.73 16 33 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 1.28 6.13 -51.93 -0.32 0.96 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.57 7.93 -51.93 -0.41 0.16 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.47 8.09 -51.93 -0.42 0.05 16 41 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 42 H 0.11 1.00 8.14 -51.92 -0.42 0.58 16 43 H 0.09 0.62 8.03 -51.93 -0.42 0.20 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.08 1.02 8.01 -51.93 -0.42 0.60 16 48 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -30.15 369.63 -10.59 -40.74 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -9.25 Total: -2.65 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -1.69 Total: -20.21 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.19 Total: -35.89 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.35 Total: -4.83 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.15 -10.59 -40.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602620717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.021 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds