Wall clock time and date at job start Tue Mar 31 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.50698 * 109.46933 * 65.00194 * 4 2 1 6 6 H 1.08003 * 120.00121 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00035 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00521 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99853 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.46790 * 89.99993 * 9 7 5 11 11 H 1.48502 * 109.47244 * 209.99821 * 9 7 5 12 12 H 1.48492 * 109.47164 * 329.99951 * 9 7 5 13 13 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 14 14 N 1.46901 * 109.47509 * 294.99972 * 13 2 1 15 15 C 1.46851 * 110.99668 * 294.21178 * 14 13 2 16 16 C 1.53039 * 109.52111 * 174.16133 * 15 14 13 17 17 C 1.53121 * 109.28160 * 59.17630 * 16 15 14 18 18 C 1.53124 * 109.16138 * 302.35107 * 17 16 15 19 19 H 1.09002 * 109.49856 * 297.71118 * 18 17 16 20 20 O 1.42898 * 109.53467 * 177.61168 * 18 17 16 21 21 C 1.42903 * 113.99953 * 90.17210 * 20 18 17 22 22 C 1.52997 * 109.46867 * 179.97438 * 21 20 18 23 23 C 1.53000 * 117.50091 * 243.74648 * 22 21 20 24 24 C 1.53001 * 117.49670 * 175.09075 * 22 21 20 25 25 C 1.46845 * 110.99974 * 170.00227 * 14 13 2 26 26 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 29 29 H 1.09000 * 109.46875 * 184.99989 * 4 2 1 30 30 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 31 31 H 0.96996 * 120.00750 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47317 * 55.00458 * 13 2 1 33 33 H 1.09007 * 109.46669 * 175.00116 * 13 2 1 34 34 H 1.08999 * 109.46106 * 294.17634 * 15 14 13 35 35 H 1.09000 * 109.46286 * 54.14795 * 15 14 13 36 36 H 1.09001 * 109.49814 * 299.23959 * 16 15 14 37 37 H 1.08995 * 109.53466 * 179.13859 * 16 15 14 38 38 H 1.08993 * 109.52545 * 182.44283 * 17 16 15 39 39 H 1.09001 * 109.51977 * 62.24920 * 17 16 15 40 40 H 1.08992 * 109.47070 * 300.00225 * 21 20 18 41 41 H 1.09003 * 109.46943 * 60.00000 * 21 20 18 42 42 H 1.08995 * 115.55228 * 29.42053 * 22 21 20 43 43 H 1.09003 * 117.49388 * 0.02562 * 23 22 21 44 44 H 1.09000 * 117.49682 * 145.02451 * 23 22 21 45 45 H 1.09005 * 117.50029 * 214.98399 * 24 22 21 46 46 H 1.09008 * 117.49852 * 359.97364 * 24 22 21 47 47 H 1.08998 * 109.46278 * 305.85567 * 25 14 13 48 48 H 1.09003 * 109.46480 * 65.83436 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6459 0.2776 -4.7993 9 14 2.9636 -1.9884 -3.9026 10 1 2.0243 -3.1327 -4.0199 11 1 3.8127 -1.9183 -5.1190 12 1 3.8252 -2.1757 -2.7078 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.3292 1.3395 2.4863 16 6 1.7932 2.1586 3.6627 17 6 2.0394 1.3931 4.9657 18 6 1.3638 0.0217 4.8783 19 1 0.2872 0.1528 4.7687 20 8 1.6352 -0.7214 6.0683 21 6 0.6693 -0.5327 7.1044 22 6 1.0583 -1.3718 8.3231 23 6 0.1046 -2.4920 8.7433 24 6 0.2090 -1.2187 9.5865 25 6 1.9122 -0.7354 3.6667 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1264 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 1.8938 -0.0449 -5.6798 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7994 1.2057 34 1 3.4015 1.1869 2.6087 35 1 2.1426 1.8753 1.5557 36 1 0.7234 2.3232 3.5339 37 1 2.3071 3.1190 3.7022 38 1 1.6204 1.9529 5.8018 39 1 3.1112 1.2622 5.1143 40 1 0.6367 0.5204 7.3833 41 1 -0.3122 -0.8446 6.7473 42 1 2.1265 -1.5454 8.4529 43 1 -0.7999 -2.6313 8.1511 44 1 0.5453 -3.4022 9.1498 45 1 0.7183 -1.2918 10.5474 46 1 -0.6268 -0.5198 9.5494 47 1 1.4228 -1.7066 3.5933 48 1 2.9866 -0.8781 3.7837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602620718.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:13 Heat of formation + Delta-G solvation = -39.707736 kcal Electronic energy + Delta-G solvation = -22429.991747 eV Core-core repulsion = 19291.861686 eV Total energy + Delta-G solvation = -3138.130061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.62233 -38.20986 -36.77001 -35.11428 -32.76475 -31.62741 -30.17751 -27.52726 -27.06883 -26.05191 -23.53453 -22.93265 -22.72471 -21.65771 -21.08076 -19.76412 -18.85066 -17.16349 -16.75015 -16.16746 -15.72783 -15.17444 -14.94642 -14.76521 -14.37153 -14.17047 -13.66265 -13.52553 -13.32964 -13.13498 -12.81752 -12.60412 -12.28393 -11.93179 -11.69516 -11.55989 -11.49402 -11.21540 -11.08453 -10.94554 -10.89887 -10.82502 -10.63845 -10.59132 -10.43503 -10.34699 -9.72053 -9.64982 -9.57549 -9.33301 -9.02619 -8.49465 -8.08946 -5.99880 -3.96602 3.12930 3.33173 3.40551 3.44306 3.50584 4.18953 4.47202 4.48853 4.52351 4.69215 4.70045 4.76949 4.97532 4.99044 5.09396 5.23309 5.26803 5.29481 5.32913 5.34120 5.51186 5.51592 5.56283 5.60851 5.66272 5.72696 5.80123 5.83727 5.88614 5.89524 6.00337 6.04415 6.13589 6.26089 6.31670 6.45283 6.62682 6.86238 7.03703 7.06245 7.17760 7.28855 7.32538 7.38687 7.52659 7.85268 8.59786 9.05926 9.63186 11.13523 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031044 B = 0.002877 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.727548 B = 9728.538699 C =10149.604421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.072 4.072 3 H 0.063 0.937 4 C -0.010 4.010 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.060 3.940 14 N -0.531 5.531 15 C 0.048 3.952 16 C -0.113 4.113 17 C -0.140 4.140 18 C 0.095 3.905 19 H 0.069 0.931 20 O -0.382 6.382 21 C 0.095 3.905 22 C -0.153 4.153 23 C -0.178 4.178 24 C -0.176 4.176 25 C 0.061 3.939 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.044 0.956 29 H 0.012 0.988 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.031 0.969 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.078 0.922 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 -0.845 26.700 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 H 0.081 0.919 4 C -0.048 4.048 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.257 5.257 15 C -0.080 4.080 16 C -0.151 4.151 17 C -0.178 4.178 18 C 0.038 3.962 19 H 0.087 0.913 20 O -0.300 6.300 21 C 0.018 3.982 22 C -0.171 4.171 23 C -0.214 4.214 24 C -0.213 4.213 25 C -0.068 4.068 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.131 0.869 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.096 0.904 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.734 -0.889 26.510 26.581 hybrid contribution 1.224 -0.871 -0.213 1.517 sum -0.510 -1.760 26.297 26.360 Atomic orbital electron populations 1.21591 0.95301 1.00578 1.00660 1.21046 0.96326 0.99179 0.92540 0.91893 1.19625 0.95716 0.95919 0.93528 1.21123 1.35143 1.09559 0.89058 0.90829 1.25030 0.95698 0.96930 0.95978 1.69911 1.47265 1.39332 0.97985 0.86809 0.80653 0.84409 0.77574 1.20380 1.21531 1.19128 1.22335 0.97667 0.97245 0.89423 1.61842 1.58644 1.03682 1.01487 1.22201 0.95536 0.90742 0.99475 1.21540 1.02225 0.97936 0.93440 1.22082 1.01510 0.96063 0.98144 1.22045 0.99376 0.90571 0.84252 0.91322 1.87853 1.49403 1.68862 1.23914 1.22002 0.91370 0.98015 0.86786 1.22150 0.98553 1.01773 0.94601 1.23086 1.01565 0.93126 1.03669 1.22985 1.02538 1.00810 0.94943 1.21962 0.99167 0.96902 0.88723 0.92262 0.94278 0.93719 0.96968 0.97063 0.92860 0.91185 0.95248 0.95071 0.89416 0.91002 0.91274 0.92054 0.91524 0.93046 0.93151 0.86928 0.88590 0.88625 0.88458 0.88667 0.90380 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.03 16 2 C -0.07 -1.42 2.26 -90.62 -0.20 -1.62 16 3 H 0.06 1.27 6.22 -51.93 -0.32 0.95 16 4 C -0.01 -0.24 3.52 -27.89 -0.10 -0.34 16 5 C -0.51 -14.44 8.96 -34.44 -0.31 -14.75 16 6 H 0.07 2.23 7.30 -52.48 -0.38 1.85 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.05 13.96 55.43 0.77 -27.27 16 9 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 13 C 0.06 1.00 4.35 -3.82 -0.02 0.99 16 14 N -0.53 -7.67 4.11 -234.66 -0.96 -8.63 16 15 C 0.05 0.65 5.30 -3.83 -0.02 0.63 16 16 C -0.11 -1.25 6.09 -26.65 -0.16 -1.41 16 17 C -0.14 -1.48 5.62 -26.60 -0.15 -1.63 16 18 C 0.10 1.10 2.77 -26.65 -0.07 1.03 16 19 H 0.07 0.79 7.79 -51.93 -0.40 0.39 16 20 O -0.38 -4.48 9.99 -35.23 -0.35 -4.83 16 21 C 0.09 0.88 6.03 37.16 0.22 1.10 16 22 C -0.15 -1.26 6.05 -90.62 -0.55 -1.81 16 23 C -0.18 -1.27 10.18 -26.70 -0.27 -1.55 16 24 C -0.18 -1.14 10.25 -26.70 -0.27 -1.41 16 25 C 0.06 0.79 5.11 -3.83 -0.02 0.78 16 26 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.77 7.75 -51.93 -0.40 0.36 16 29 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 30 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.07 1.14 7.99 -51.93 -0.41 0.73 16 33 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 1.28 6.12 -51.93 -0.32 0.96 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.58 7.95 -51.93 -0.41 0.16 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.43 7.95 -51.93 -0.41 0.02 16 41 H 0.05 0.44 7.82 -51.93 -0.41 0.04 16 42 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.10 0.67 8.03 -51.93 -0.42 0.25 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 47 H 0.08 1.02 8.02 -51.93 -0.42 0.61 16 48 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -30.15 369.66 -10.59 -40.74 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -9.25 Total: -2.61 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -1.69 Total: -20.25 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.19 Total: -35.90 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.35 Total: -4.83 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.15 -10.59 -40.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602620718.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.033 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds