Wall clock time and date at job start Tue Mar 31 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47294 * 2 1 4 4 C 1.52998 * 109.46887 * 239.99766 * 2 1 3 5 5 C 1.50709 * 109.46755 * 65.00192 * 4 2 1 6 6 H 1.07997 * 120.00212 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99548 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00235 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99451 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47475 * 60.00243 * 9 7 5 11 11 H 1.48504 * 109.46700 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47089 * 300.00121 * 9 7 5 13 13 C 1.53001 * 109.47308 * 120.00028 * 2 1 3 14 14 N 1.46893 * 109.47338 * 296.69990 * 13 2 1 15 15 C 1.46846 * 111.00467 * 164.00527 * 14 13 2 16 16 C 1.53029 * 109.52750 * 185.83969 * 15 14 13 17 17 C 1.53119 * 109.27945 * 300.82154 * 16 15 14 18 18 C 1.53115 * 109.15836 * 57.65573 * 17 16 15 19 19 H 1.09000 * 109.50630 * 62.28797 * 18 17 16 20 20 O 1.42901 * 109.50369 * 182.36623 * 18 17 16 21 21 C 1.42905 * 113.99869 * 269.99781 * 20 18 17 22 22 C 1.53006 * 109.47025 * 179.97438 * 21 20 18 23 23 C 1.52999 * 117.49889 * 243.74877 * 22 21 20 24 24 C 1.52991 * 117.49820 * 175.08632 * 22 21 20 25 25 C 1.46850 * 111.00129 * 288.22028 * 14 13 2 26 26 H 1.08999 * 109.47065 * 54.73193 * 1 2 3 27 27 H 1.08999 * 109.47198 * 174.73457 * 1 2 3 28 28 H 1.09004 * 109.46469 * 294.73391 * 1 2 3 29 29 H 1.08996 * 109.47258 * 184.99638 * 4 2 1 30 30 H 1.08997 * 109.47431 * 305.00457 * 4 2 1 31 31 H 0.97000 * 119.99836 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47197 * 56.70097 * 13 2 1 33 33 H 1.08994 * 109.47219 * 176.69599 * 13 2 1 34 34 H 1.09006 * 109.46045 * 305.86058 * 15 14 13 35 35 H 1.09000 * 109.45868 * 65.83307 * 15 14 13 36 36 H 1.09007 * 109.50643 * 60.76098 * 16 15 14 37 37 H 1.09006 * 109.50732 * 180.83708 * 16 15 14 38 38 H 1.09006 * 109.52419 * 177.55477 * 17 16 15 39 39 H 1.08997 * 109.52406 * 297.74808 * 17 16 15 40 40 H 1.09002 * 109.46936 * 299.99665 * 21 20 18 41 41 H 1.09001 * 109.47049 * 59.99925 * 21 20 18 42 42 H 1.08998 * 115.54992 * 29.42036 * 22 21 20 43 43 H 1.08998 * 117.49787 * 359.97438 * 23 22 21 44 44 H 1.08997 * 117.50018 * 145.02072 * 23 22 21 45 45 H 1.08999 * 117.50366 * 214.98311 * 24 22 21 46 46 H 1.09009 * 117.49907 * 359.97438 * 24 22 21 47 47 H 1.08997 * 109.45718 * 294.17030 * 25 14 13 48 48 H 1.08992 * 109.46274 * 54.14061 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6412 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6762 -1.5188 -3.8512 9 14 1.4983 0.5627 -5.2496 10 1 2.0894 1.9235 -5.1871 11 1 1.9934 -0.1373 -6.4622 12 1 0.0183 0.6682 -5.3091 13 6 2.0401 -0.7213 1.2492 14 7 1.6167 0.0157 2.4473 15 6 1.7471 -0.8162 3.6504 16 6 1.1633 -0.0714 4.8530 17 6 1.9119 1.2511 5.0407 18 6 1.8012 2.0778 3.7566 19 1 0.7544 2.3133 3.5645 20 8 2.5436 3.2898 3.9040 21 6 1.7833 4.3759 4.4374 22 6 2.6742 5.6146 4.5515 23 6 2.9401 6.1668 5.9534 24 6 2.0139 6.9211 4.9961 25 6 2.3665 1.2707 2.5857 26 1 -0.3633 0.5934 -0.8390 27 1 -0.3633 -1.0233 -0.0943 28 1 -0.3632 0.4300 0.9335 29 1 3.1263 -0.7995 -1.2057 30 1 1.6053 -1.7198 -1.2952 31 1 2.9234 -1.8417 -4.7318 32 1 1.6293 -1.7304 1.2793 33 1 3.1284 -0.7728 1.2201 34 1 1.2068 -1.7518 3.5053 35 1 2.8005 -1.0296 3.8319 36 1 0.1064 0.1304 4.6782 37 1 1.2737 -0.6830 5.7486 38 1 1.4709 1.8049 5.8695 39 1 2.9614 1.0485 5.2541 40 1 0.9441 4.5912 3.7760 41 1 1.4081 4.1065 5.4247 42 1 3.4819 5.6815 3.8226 43 1 2.4801 5.6479 6.7943 44 1 3.9226 6.5974 6.1467 45 1 2.3874 7.8477 4.5601 46 1 0.9447 6.8984 5.2069 47 1 3.4169 1.0473 2.7722 48 1 2.2761 1.8508 1.6674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602620719.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:16 Heat of formation + Delta-G solvation = -43.455042 kcal Electronic energy + Delta-G solvation = -22576.243498 eV Core-core repulsion = 19437.950942 eV Total energy + Delta-G solvation = -3138.292556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.54355 -38.09602 -36.61328 -35.09362 -32.77111 -31.36260 -30.19646 -26.99352 -26.89659 -25.96394 -23.72493 -22.76925 -22.63912 -21.87830 -20.95910 -19.73593 -18.78083 -17.08593 -16.47462 -15.98352 -15.42842 -15.23520 -14.98047 -14.60348 -14.34439 -14.26583 -13.56330 -13.46647 -13.23193 -13.06453 -12.73572 -12.32611 -12.11308 -11.85971 -11.58732 -11.40877 -11.33054 -11.08141 -11.06872 -10.84693 -10.82450 -10.79761 -10.64496 -10.49519 -10.34028 -10.25356 -10.16317 -9.58442 -9.42396 -9.07597 -8.91671 -8.28822 -8.01105 -5.93934 -3.94780 3.23436 3.37178 3.41219 3.44006 3.60129 4.24780 4.51382 4.56181 4.61275 4.75192 4.77698 4.83008 4.97872 5.08012 5.16298 5.31552 5.34216 5.35356 5.41862 5.44428 5.52654 5.58644 5.64334 5.68303 5.71836 5.80309 5.84208 5.92384 5.93834 5.96633 6.06127 6.15031 6.22478 6.27818 6.43213 6.58414 6.74759 7.06123 7.10936 7.23533 7.25259 7.43900 7.45603 7.73552 7.90076 8.06554 8.50992 9.11432 9.68352 11.17660 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.003528 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.663353 B = 7935.108427 C = 9278.611507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.063 3.937 14 N -0.532 5.532 15 C 0.051 3.949 16 C -0.113 4.113 17 C -0.140 4.140 18 C 0.096 3.904 19 H 0.068 0.932 20 O -0.380 6.380 21 C 0.095 3.905 22 C -0.151 4.151 23 C -0.179 4.179 24 C -0.175 4.175 25 C 0.060 3.940 26 H 0.050 0.950 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.037 0.963 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.154 9.495 21.249 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.258 5.258 15 C -0.077 4.077 16 C -0.151 4.151 17 C -0.178 4.178 18 C 0.038 3.962 19 H 0.086 0.914 20 O -0.298 6.298 21 C 0.018 3.982 22 C -0.169 4.169 23 C -0.216 4.216 24 C -0.212 4.212 25 C -0.068 4.068 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.132 0.868 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.113 0.887 47 H 0.056 0.944 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.371 9.509 21.016 23.189 hybrid contribution 0.451 0.223 -0.741 0.896 sum -1.920 9.732 20.275 22.571 Atomic orbital electron populations 1.21565 0.95796 1.00620 0.99884 1.21207 0.95939 0.99067 0.93678 0.92665 1.19128 0.95900 0.95517 0.90475 1.21204 1.34557 1.08244 0.90989 0.92649 1.25015 0.95358 0.95100 0.99059 1.69952 1.39131 1.21253 1.23431 0.86699 0.78895 0.80132 0.82520 1.20308 1.21404 1.20281 1.22303 0.97565 0.97250 0.89273 1.61852 1.56466 1.04681 1.02762 1.22123 0.98895 0.96442 0.90216 1.21529 1.00486 0.95627 0.97433 1.22077 1.01287 0.96618 0.97812 1.22049 0.95665 0.84037 0.94497 0.91356 1.87869 1.38044 1.19345 1.84588 1.22003 0.93084 0.85621 0.97471 1.22161 1.02655 0.93261 0.98861 1.23070 1.01064 1.04120 0.93333 1.22979 0.99027 0.95361 1.03840 1.22006 0.95314 0.91429 0.98100 0.93106 0.94188 0.93800 0.96973 0.96612 0.93079 0.91154 0.95104 0.90615 0.95150 0.91078 0.91485 0.92154 0.91507 0.92785 0.93475 0.86759 0.88803 0.88686 0.88405 0.88693 0.94434 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.86 37.16 0.33 -2.05 16 2 C -0.08 -1.66 2.34 -90.62 -0.21 -1.87 16 3 H 0.05 1.18 6.54 -51.93 -0.34 0.84 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.51 8.47 -34.43 -0.29 -14.80 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.06 1.11 4.38 -3.83 -0.02 1.09 16 14 N -0.53 -8.00 3.90 -234.68 -0.92 -8.92 16 15 C 0.05 0.64 5.44 -3.84 -0.02 0.62 16 16 C -0.11 -1.18 6.09 -26.65 -0.16 -1.34 16 17 C -0.14 -1.53 5.62 -26.61 -0.15 -1.68 16 18 C 0.10 1.21 2.77 -26.65 -0.07 1.14 16 19 H 0.07 0.87 7.79 -51.93 -0.40 0.46 16 20 O -0.38 -5.00 9.99 -35.23 -0.35 -5.36 16 21 C 0.09 0.99 6.03 37.16 0.22 1.22 16 22 C -0.15 -1.44 6.05 -90.62 -0.55 -1.99 16 23 C -0.18 -1.41 10.18 -26.69 -0.27 -1.68 16 24 C -0.18 -1.33 10.25 -26.70 -0.27 -1.60 16 25 C 0.06 0.89 4.96 -3.83 -0.02 0.87 16 26 H 0.05 1.06 7.11 -51.93 -0.37 0.69 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.77 7.55 -51.93 -0.39 0.38 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.07 1.22 7.87 -51.93 -0.41 0.81 16 33 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 34 H 0.08 0.91 7.96 -51.93 -0.41 0.50 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.58 7.94 -51.93 -0.41 0.17 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 41 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 42 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.09 0.68 8.03 -51.93 -0.42 0.27 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 0.65 8.14 -51.92 -0.42 0.22 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.09 1.44 6.44 -51.93 -0.33 1.11 16 LS Contribution 373.51 15.07 5.63 5.63 Total: -1.00 -30.05 373.51 -10.94 -40.99 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -9.31 Total: -2.75 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -1.71 Total: -19.98 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.18 Total: -35.46 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.35 Total: -5.36 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.05 -10.94 -40.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602620719.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.465 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds