Wall clock time and date at job start Tue Mar 31 2020 06:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47294 * 2 1 4 4 C 1.52998 * 109.46887 * 239.99766 * 2 1 3 5 5 C 1.50709 * 109.46755 * 65.00192 * 4 2 1 6 6 H 1.07997 * 120.00212 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99548 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00235 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99451 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47475 * 60.00243 * 9 7 5 11 11 H 1.48504 * 109.46700 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47089 * 300.00121 * 9 7 5 13 13 C 1.53001 * 109.47308 * 120.00028 * 2 1 3 14 14 N 1.46893 * 109.47338 * 296.69990 * 13 2 1 15 15 C 1.46846 * 111.00467 * 164.00527 * 14 13 2 16 16 C 1.53029 * 109.52750 * 185.83969 * 15 14 13 17 17 C 1.53119 * 109.27945 * 300.82154 * 16 15 14 18 18 C 1.53115 * 109.15836 * 57.65573 * 17 16 15 19 19 H 1.09000 * 109.50630 * 62.28797 * 18 17 16 20 20 O 1.42901 * 109.50369 * 182.36623 * 18 17 16 21 21 C 1.42905 * 113.99869 * 269.99781 * 20 18 17 22 22 C 1.53006 * 109.47025 * 179.97438 * 21 20 18 23 23 C 1.52999 * 117.49889 * 243.74877 * 22 21 20 24 24 C 1.52991 * 117.49820 * 175.08632 * 22 21 20 25 25 C 1.46850 * 111.00129 * 288.22028 * 14 13 2 26 26 H 1.08999 * 109.47065 * 54.73193 * 1 2 3 27 27 H 1.08999 * 109.47198 * 174.73457 * 1 2 3 28 28 H 1.09004 * 109.46469 * 294.73391 * 1 2 3 29 29 H 1.08996 * 109.47258 * 184.99638 * 4 2 1 30 30 H 1.08997 * 109.47431 * 305.00457 * 4 2 1 31 31 H 0.97000 * 119.99836 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47197 * 56.70097 * 13 2 1 33 33 H 1.08994 * 109.47219 * 176.69599 * 13 2 1 34 34 H 1.09006 * 109.46045 * 305.86058 * 15 14 13 35 35 H 1.09000 * 109.45868 * 65.83307 * 15 14 13 36 36 H 1.09007 * 109.50643 * 60.76098 * 16 15 14 37 37 H 1.09006 * 109.50732 * 180.83708 * 16 15 14 38 38 H 1.09006 * 109.52419 * 177.55477 * 17 16 15 39 39 H 1.08997 * 109.52406 * 297.74808 * 17 16 15 40 40 H 1.09002 * 109.46936 * 299.99665 * 21 20 18 41 41 H 1.09001 * 109.47049 * 59.99925 * 21 20 18 42 42 H 1.08998 * 115.54992 * 29.42036 * 22 21 20 43 43 H 1.08998 * 117.49787 * 359.97438 * 23 22 21 44 44 H 1.08997 * 117.50018 * 145.02072 * 23 22 21 45 45 H 1.08999 * 117.50366 * 214.98311 * 24 22 21 46 46 H 1.09009 * 117.49907 * 359.97438 * 24 22 21 47 47 H 1.08997 * 109.45718 * 294.17030 * 25 14 13 48 48 H 1.08992 * 109.46274 * 54.14061 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6412 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6762 -1.5188 -3.8512 9 14 1.4983 0.5627 -5.2496 10 1 2.0894 1.9235 -5.1871 11 1 1.9934 -0.1373 -6.4622 12 1 0.0183 0.6682 -5.3091 13 6 2.0401 -0.7213 1.2492 14 7 1.6167 0.0157 2.4473 15 6 1.7471 -0.8162 3.6504 16 6 1.1633 -0.0714 4.8530 17 6 1.9119 1.2511 5.0407 18 6 1.8012 2.0778 3.7566 19 1 0.7544 2.3133 3.5645 20 8 2.5436 3.2898 3.9040 21 6 1.7833 4.3759 4.4374 22 6 2.6742 5.6146 4.5515 23 6 2.9401 6.1668 5.9534 24 6 2.0139 6.9211 4.9961 25 6 2.3665 1.2707 2.5857 26 1 -0.3633 0.5934 -0.8390 27 1 -0.3633 -1.0233 -0.0943 28 1 -0.3632 0.4300 0.9335 29 1 3.1263 -0.7995 -1.2057 30 1 1.6053 -1.7198 -1.2952 31 1 2.9234 -1.8417 -4.7318 32 1 1.6293 -1.7304 1.2793 33 1 3.1284 -0.7728 1.2201 34 1 1.2068 -1.7518 3.5053 35 1 2.8005 -1.0296 3.8319 36 1 0.1064 0.1304 4.6782 37 1 1.2737 -0.6830 5.7486 38 1 1.4709 1.8049 5.8695 39 1 2.9614 1.0485 5.2541 40 1 0.9441 4.5912 3.7760 41 1 1.4081 4.1065 5.4247 42 1 3.4819 5.6815 3.8226 43 1 2.4801 5.6479 6.7943 44 1 3.9226 6.5974 6.1467 45 1 2.3874 7.8477 4.5601 46 1 0.9447 6.8984 5.2069 47 1 3.4169 1.0473 2.7722 48 1 2.2761 1.8508 1.6674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602620719.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:15 Heat of formation + Delta-G solvation = -59.429566 kcal Electronic energy + Delta-G solvation = -22576.936206 eV Core-core repulsion = 19437.950942 eV Total energy + Delta-G solvation = -3138.985264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.60168 -39.02860 -37.61970 -36.55992 -34.58012 -32.89250 -31.20374 -28.91902 -27.78941 -27.40051 -25.39373 -23.88638 -23.37665 -23.18531 -21.70136 -20.74909 -20.46601 -18.55432 -17.91594 -17.20097 -16.55485 -16.40439 -16.16512 -15.94625 -15.64560 -15.33929 -14.90873 -14.70860 -14.34197 -14.15006 -13.97808 -13.95894 -13.49331 -13.22948 -12.99212 -12.75527 -12.59619 -12.42497 -12.28993 -12.26674 -12.14076 -11.99668 -11.97260 -11.70855 -11.57564 -11.38835 -11.28175 -11.10149 -11.04573 -10.83554 -10.52542 -10.31373 -9.28012 -8.17156 -6.26291 1.39688 1.42700 1.50320 2.32835 2.42639 2.88769 3.16061 3.18323 3.76735 3.80869 3.88378 3.97412 4.00876 4.08622 4.17261 4.22588 4.30977 4.34434 4.42140 4.50637 4.54437 4.59046 4.65330 4.71321 4.73591 4.77449 4.82187 4.93085 4.97374 4.97875 5.01085 5.04079 5.06901 5.14914 5.23857 5.25150 5.29700 5.39091 5.48433 5.50653 5.56019 5.80644 5.89099 6.05514 6.14372 6.31934 6.36580 6.89210 7.41791 8.94789 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.003528 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.663353 B = 7935.108427 C = 9278.611507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.071 4.071 3 H 0.046 0.954 4 C 0.034 3.966 5 C -0.530 4.530 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.074 3.926 14 N -0.530 5.530 15 C 0.047 3.953 16 C -0.105 4.105 17 C -0.134 4.134 18 C 0.100 3.900 19 H 0.071 0.929 20 O -0.401 6.401 21 C 0.093 3.907 22 C -0.174 4.174 23 C -0.173 4.173 24 C -0.164 4.164 25 C 0.060 3.940 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.067 0.933 29 H -0.017 1.017 30 H -0.007 1.007 31 H 0.262 0.738 32 H 0.075 0.925 33 H 0.018 0.982 34 H 0.084 0.916 35 H 0.029 0.971 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.026 0.974 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 10.658 22.932 25.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.090 4.090 3 H 0.065 0.935 4 C -0.004 4.004 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.191 1.191 13 C -0.054 4.054 14 N -0.255 5.255 15 C -0.081 4.081 16 C -0.143 4.143 17 C -0.172 4.172 18 C 0.042 3.958 19 H 0.089 0.911 20 O -0.320 6.320 21 C 0.017 3.983 22 C -0.193 4.193 23 C -0.210 4.210 24 C -0.201 4.201 25 C -0.068 4.068 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.001 0.999 30 H 0.011 0.989 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.037 0.963 34 H 0.102 0.898 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.045 0.955 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.775 10.684 22.722 25.390 hybrid contribution 0.933 -0.133 -1.244 1.560 sum -2.842 10.550 21.478 24.098 Atomic orbital electron populations 1.21446 0.94435 1.00374 1.00456 1.21001 0.96898 0.98114 0.92975 0.93536 1.19010 0.93923 0.94782 0.92686 1.21603 1.34509 1.08548 0.92129 0.92289 1.25945 0.95233 0.96107 1.02609 1.70090 1.40251 1.22929 1.24339 0.85573 0.79014 0.78733 0.78188 1.19395 1.20915 1.19101 1.22030 0.96677 0.97284 0.89396 1.61817 1.56002 1.04815 1.02874 1.22278 0.99268 0.96745 0.89797 1.21512 1.00262 0.95334 0.97160 1.22036 1.01228 0.96742 0.97195 1.21972 0.95274 0.84083 0.94423 0.91117 1.87847 1.39055 1.20072 1.85068 1.22143 0.93028 0.85099 0.98042 1.22138 1.03048 0.94138 0.99957 1.23160 1.01582 1.03606 0.92645 1.23079 0.99640 0.94550 1.02860 1.21969 0.94984 0.91490 0.98344 0.94610 0.94382 0.91392 0.99895 0.98859 0.92919 0.90671 0.96343 0.89786 0.95318 0.90680 0.88968 0.90201 0.92141 0.92824 0.91921 0.88419 0.87899 0.88165 0.87684 0.87621 0.95550 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.28 8.86 71.98 0.64 -3.64 16 2 C -0.07 -3.02 2.34 -10.79 -0.03 -3.04 16 3 H 0.05 2.05 6.54 -2.39 -0.02 2.04 16 4 C 0.03 1.81 4.45 29.85 0.13 1.94 16 5 C -0.53 -30.69 8.47 25.60 0.22 -30.47 16 6 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 8 N -0.94 -58.09 13.29 21.45 0.28 -57.80 16 9 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 C 0.07 2.64 4.38 86.31 0.38 3.02 16 14 N -0.53 -15.58 3.90 -896.40 -3.50 -19.08 16 15 C 0.05 1.09 5.44 86.32 0.47 1.56 16 16 C -0.10 -1.88 6.09 30.64 0.19 -1.69 16 17 C -0.13 -2.60 5.62 30.67 0.17 -2.43 16 18 C 0.10 2.44 2.77 30.65 0.08 2.52 16 19 H 0.07 1.68 7.79 -2.39 -0.02 1.66 16 20 O -0.40 -10.37 9.99 -148.98 -1.49 -11.86 16 21 C 0.09 1.83 6.03 71.98 0.43 2.27 16 22 C -0.17 -3.18 6.05 -10.79 -0.07 -3.24 16 23 C -0.17 -2.41 10.18 30.62 0.31 -2.09 16 24 C -0.16 -2.19 10.25 30.62 0.31 -1.88 16 25 C 0.06 1.81 4.96 86.33 0.43 2.24 16 26 H 0.03 1.47 7.11 -2.39 -0.02 1.45 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 2.31 7.55 -2.38 -0.02 2.29 16 29 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 30 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 32 H 0.07 2.61 7.87 -2.39 -0.02 2.59 16 33 H 0.02 0.69 8.05 -2.39 -0.02 0.68 16 34 H 0.08 1.84 7.96 -2.38 -0.02 1.82 16 35 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.08 1.27 7.94 -2.38 -0.02 1.25 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.05 1.03 8.09 -2.39 -0.02 1.01 16 41 H 0.06 1.02 7.67 -2.39 -0.02 1.00 16 42 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.10 1.24 8.03 -2.39 -0.02 1.22 16 44 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.11 1.18 8.14 -2.38 -0.02 1.17 16 47 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.06 2.20 6.44 -2.39 -0.02 2.18 16 Total: -1.00 -65.60 373.51 2.34 -63.26 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.88 Total: 12.78 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 4.14 Total: -34.59 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -3.21 Total: -76.88 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -1.49 Total: -11.86 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -65.60 2.34 -63.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602620719.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.832 kcal (2) G-P(sol) polarization free energy of solvation -65.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds