Wall clock time and date at job start Tue Mar 31 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46509 * 2 1 4 4 C 1.53001 * 109.46827 * 119.99861 * 2 1 3 5 5 C 1.50705 * 109.47289 * 294.99873 * 4 2 1 6 6 H 1.07996 * 119.99451 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00083 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99718 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00044 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46873 * 270.00133 * 9 7 5 11 11 H 1.48502 * 109.47175 * 29.99458 * 9 7 5 12 12 H 1.48501 * 109.47499 * 150.00051 * 9 7 5 13 13 C 1.52999 * 109.47290 * 240.00107 * 2 1 3 14 14 N 1.46893 * 109.47272 * 174.79902 * 13 2 1 15 15 C 1.46846 * 111.00040 * 288.31955 * 14 13 2 16 16 C 1.53035 * 109.52711 * 174.15892 * 15 14 13 17 17 C 1.53120 * 109.27925 * 59.17928 * 16 15 14 18 18 C 1.53122 * 109.15755 * 302.34751 * 17 16 15 19 19 H 1.09006 * 109.50383 * 297.71305 * 18 17 16 20 20 O 1.42903 * 109.53540 * 177.61448 * 18 17 16 21 21 C 1.42901 * 114.00105 * 90.17556 * 20 18 17 22 22 C 1.52997 * 109.47068 * 180.02562 * 21 20 18 23 23 C 1.53001 * 117.49407 * 243.74899 * 22 21 20 24 24 C 1.52996 * 117.50031 * 175.09112 * 22 21 20 25 25 C 1.46842 * 111.00355 * 164.10638 * 14 13 2 26 26 H 1.09000 * 109.46926 * 185.41166 * 1 2 3 27 27 H 1.08992 * 109.47197 * 305.40908 * 1 2 3 28 28 H 1.08999 * 109.46927 * 65.41572 * 1 2 3 29 29 H 1.09005 * 109.46897 * 175.00061 * 4 2 1 30 30 H 1.08995 * 109.47115 * 55.00098 * 4 2 1 31 31 H 0.97006 * 119.99730 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46611 * 294.79475 * 13 2 1 33 33 H 1.09000 * 109.47410 * 54.79540 * 13 2 1 34 34 H 1.08999 * 109.46478 * 294.17692 * 15 14 13 35 35 H 1.09002 * 109.46266 * 54.14122 * 15 14 13 36 36 H 1.09004 * 109.50142 * 299.23813 * 16 15 14 37 37 H 1.08998 * 109.50865 * 179.12121 * 16 15 14 38 38 H 1.08994 * 109.52490 * 182.44538 * 17 16 15 39 39 H 1.08995 * 109.51975 * 62.24788 * 17 16 15 40 40 H 1.09008 * 109.46832 * 300.00203 * 21 20 18 41 41 H 1.09003 * 109.46889 * 59.99800 * 21 20 18 42 42 H 1.08997 * 115.55274 * 29.41437 * 22 21 20 43 43 H 1.09000 * 117.49902 * 359.97438 * 23 22 21 44 44 H 1.09001 * 117.49941 * 145.02390 * 23 22 21 45 45 H 1.09001 * 117.50229 * 214.97730 * 24 22 21 46 46 H 1.09002 * 117.49886 * 359.96758 * 24 22 21 47 47 H 1.09003 * 109.46531 * 305.85730 * 25 14 13 48 48 H 1.09005 * 109.45891 * 65.83703 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9932 -0.4016 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4984 0.5628 5.2496 10 1 2.5632 1.5431 5.5822 11 1 0.2267 1.2833 4.9871 12 1 1.3121 -0.3712 6.3890 13 6 2.0401 -0.7212 -1.2492 14 7 3.5037 -0.6134 -1.3136 15 6 3.9162 0.7546 -1.6523 16 6 5.4402 0.8650 -1.5679 17 6 6.0741 -0.1345 -2.5395 18 6 5.5903 -1.5459 -2.1952 19 1 5.9180 -1.8076 -1.1891 20 8 6.1332 -2.4789 -3.1316 21 6 7.3922 -3.0298 -2.7398 22 6 7.8759 -4.0092 -3.8111 23 6 8.0179 -5.4793 -3.4117 24 6 9.2664 -4.6216 -3.6322 25 6 4.0619 -1.5863 -2.2614 26 1 -0.3633 -1.0231 0.0969 27 1 -0.3633 0.5954 0.8375 28 1 -0.3633 0.4275 -0.9345 29 1 3.1264 -0.7995 1.2056 30 1 1.6054 -1.7197 1.2952 31 1 2.9242 -1.8412 4.7318 32 1 1.7549 -1.7723 -1.2038 33 1 1.6027 -0.2641 -2.1368 34 1 3.5904 0.9920 -2.6650 35 1 3.4620 1.4549 -0.9513 36 1 5.7656 0.6412 -0.5519 37 1 5.7473 1.8763 -1.8345 38 1 7.1595 -0.0899 -2.4514 39 1 5.7800 0.1126 -3.5595 40 1 8.1207 -2.2268 -2.6265 41 1 7.2796 -3.5547 -1.7912 42 1 7.5480 -3.7933 -4.8279 43 1 7.7672 -5.7486 -2.3856 44 1 7.7839 -6.2306 -4.1659 45 1 9.8534 -4.8090 -4.5314 46 1 9.8370 -4.3264 -2.7516 47 1 3.7135 -2.5863 -2.0028 48 1 3.7355 -1.3378 -3.2713 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602620720.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:18 Heat of formation + Delta-G solvation = -41.708150 kcal Electronic energy + Delta-G solvation = -22709.031151 eV Core-core repulsion = 19570.814346 eV Total energy + Delta-G solvation = -3138.216805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.42225 -38.03131 -36.58804 -34.93552 -32.62515 -31.50145 -29.99062 -26.98565 -26.89674 -25.89363 -23.24949 -22.75317 -22.57785 -22.04718 -20.92535 -19.60593 -18.74359 -16.95307 -16.31178 -16.01628 -15.54850 -14.98215 -14.82625 -14.56403 -14.29231 -14.05936 -13.68711 -13.27560 -13.13974 -12.99742 -12.53358 -12.42490 -11.94384 -11.78341 -11.55476 -11.39498 -11.27956 -11.05356 -10.90620 -10.84015 -10.83420 -10.72680 -10.60446 -10.45703 -10.27897 -10.23198 -10.04700 -9.58296 -9.32968 -9.02506 -8.82203 -8.22148 -7.80028 -5.86821 -3.87028 3.30154 3.37409 3.43797 3.46619 3.66374 4.36600 4.55196 4.62743 4.67435 4.86149 4.88431 4.95790 5.15624 5.16531 5.30057 5.38702 5.44423 5.47431 5.48941 5.51183 5.65694 5.70055 5.70525 5.74711 5.79181 5.87062 5.94600 5.99155 6.02986 6.08363 6.10376 6.19530 6.25827 6.32357 6.42427 6.48421 6.56731 7.01664 7.06653 7.24539 7.33183 7.55565 7.57417 7.87700 8.09678 8.23081 8.59533 9.20957 9.74994 11.24285 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017567 B = 0.003572 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.482548 B = 7837.325528 C = 8526.007169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 H 0.056 0.944 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.051 0.949 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.288 1.288 13 C 0.067 3.933 14 N -0.523 5.523 15 C 0.055 3.945 16 C -0.115 4.115 17 C -0.138 4.138 18 C 0.094 3.906 19 H 0.073 0.927 20 O -0.383 6.383 21 C 0.094 3.906 22 C -0.151 4.151 23 C -0.178 4.178 24 C -0.176 4.176 25 C 0.064 3.936 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.027 0.973 29 H 0.032 0.968 30 H 0.008 0.992 31 H 0.257 0.743 32 H 0.068 0.932 33 H 0.019 0.981 34 H 0.025 0.975 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.079 0.921 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.532 -1.804 -15.993 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 H 0.074 0.926 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.070 0.930 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.713 3.287 10 H -0.209 1.209 11 H -0.201 1.201 12 H -0.214 1.214 13 C -0.060 4.060 14 N -0.248 5.248 15 C -0.073 4.073 16 C -0.153 4.153 17 C -0.176 4.176 18 C 0.036 3.964 19 H 0.091 0.909 20 O -0.302 6.302 21 C 0.017 3.983 22 C -0.169 4.169 23 C -0.215 4.215 24 C -0.213 4.213 25 C -0.064 4.064 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.038 0.962 34 H 0.043 0.957 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.130 0.870 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.097 0.903 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.700 -2.091 -15.577 18.469 hybrid contribution -0.387 0.706 0.367 0.885 sum 9.313 -1.385 -15.209 17.888 Atomic orbital electron populations 1.21698 0.96451 1.01254 0.99580 1.21235 0.94154 0.99241 0.95591 0.92595 1.19044 0.97374 0.94450 0.89225 1.21321 1.34187 1.08118 0.91406 0.93044 1.24984 0.95553 0.95070 0.98840 1.69979 1.39298 1.21187 1.23030 0.86722 0.78817 0.79886 0.83292 1.20875 1.20084 1.21425 1.22243 0.85211 1.01048 0.97489 1.61683 1.10858 1.03820 1.48464 1.22130 0.95460 0.90988 0.98730 1.21545 0.95117 0.98254 1.00397 1.22060 1.00169 0.95375 0.99969 1.22068 0.93817 0.87946 0.92595 0.90921 1.87822 1.35576 1.60111 1.46642 1.22012 0.85638 0.94898 0.95736 1.22140 0.99759 0.94360 1.00674 1.23090 1.01803 0.93652 1.02912 1.22980 0.90588 1.04276 1.03505 1.21945 0.92758 0.97417 0.94280 0.93496 0.92038 0.95348 0.94942 0.97314 0.93321 0.91328 0.96237 0.95672 0.89772 0.90528 0.91505 0.92110 0.91781 0.93091 0.92958 0.87028 0.88490 0.88695 0.88553 0.88651 0.90304 0.94900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.91 37.16 0.33 -2.16 16 2 C -0.08 -1.71 2.35 -90.62 -0.21 -1.92 16 3 H 0.06 1.16 6.48 -51.93 -0.34 0.82 16 4 C 0.04 0.93 4.39 -27.88 -0.12 0.81 16 5 C -0.51 -14.43 8.48 -34.44 -0.29 -14.72 16 6 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 9 Si 0.88 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 13 C 0.07 1.19 4.36 -3.83 -0.02 1.17 16 14 N -0.52 -8.93 3.99 -234.68 -0.94 -9.87 16 15 C 0.05 0.83 5.30 -3.84 -0.02 0.81 16 16 C -0.12 -1.54 6.09 -26.65 -0.16 -1.70 16 17 C -0.14 -1.74 5.63 -26.61 -0.15 -1.89 16 18 C 0.09 1.32 2.77 -26.65 -0.07 1.25 16 19 H 0.07 1.11 7.79 -51.93 -0.40 0.70 16 20 O -0.38 -5.26 9.99 -35.23 -0.35 -5.61 16 21 C 0.09 1.07 6.03 37.16 0.22 1.29 16 22 C -0.15 -1.49 6.05 -90.62 -0.55 -2.04 16 23 C -0.18 -1.57 10.18 -26.69 -0.27 -1.84 16 24 C -0.18 -1.41 10.25 -26.70 -0.27 -1.69 16 25 C 0.06 0.98 5.10 -3.84 -0.02 0.97 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 1.23 7.11 -51.93 -0.37 0.87 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.91 7.63 -51.93 -0.40 0.51 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.07 1.23 7.87 -51.93 -0.41 0.82 16 33 H 0.02 0.31 8.06 -51.93 -0.42 -0.11 16 34 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 1.36 6.41 -51.93 -0.33 1.03 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.70 7.95 -51.93 -0.41 0.28 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.54 7.95 -51.92 -0.41 0.12 16 41 H 0.05 0.60 7.82 -51.93 -0.41 0.19 16 42 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.10 0.87 8.03 -51.93 -0.42 0.45 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.08 1.24 7.96 -51.93 -0.41 0.83 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -30.20 373.62 -10.96 -41.16 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -9.31 Total: -1.59 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -1.71 Total: -20.15 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.20 Total: -36.34 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.35 Total: -5.61 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.20 -10.96 -41.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602620720.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.549 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds