Wall clock time and date at job start Tue Mar 31 2020 06:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47349 * 2 1 4 4 C 1.53002 * 109.46522 * 119.99763 * 2 1 3 5 5 C 1.50703 * 109.47285 * 294.99788 * 4 2 1 6 6 H 1.07998 * 119.99687 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00167 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00102 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00021 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47112 * 89.99466 * 9 7 5 11 11 H 1.48507 * 109.47015 * 209.99279 * 9 7 5 12 12 H 1.48496 * 109.46992 * 329.99252 * 9 7 5 13 13 C 1.52991 * 109.47063 * 239.99311 * 2 1 3 14 14 N 1.46892 * 109.47411 * 60.53013 * 13 2 1 15 15 C 1.44473 * 110.95059 * 55.10364 * 14 13 2 16 16 C 1.53801 * 111.85712 * 216.05914 * 15 14 13 17 17 O 1.44314 * 112.84340 * 318.60376 * 16 15 14 18 18 C 1.40166 * 117.32817 * 317.75380 * 17 16 15 19 19 C 1.54659 * 109.16531 * 93.01875 * 18 17 16 20 20 C 1.54627 * 107.56540 * 46.38665 * 19 18 17 21 21 C 1.54809 * 104.24608 * 91.29475 * 20 19 18 22 22 C 1.54857 * 102.69487 * 38.32030 * 21 20 19 23 23 C 1.54178 * 104.19254 * 321.85905 * 22 21 20 24 24 C 1.46818 * 111.26884 * 283.72331 * 19 18 17 25 25 H 1.08991 * 109.47349 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47172 * 300.00715 * 1 2 3 27 27 H 1.09003 * 109.46787 * 60.00247 * 1 2 3 28 28 H 1.08997 * 109.47579 * 55.00163 * 4 2 1 29 29 H 1.09005 * 109.47251 * 175.00044 * 4 2 1 30 30 H 0.97001 * 120.00149 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47638 * 300.52496 * 13 2 1 32 32 H 1.09007 * 109.47465 * 180.52903 * 13 2 1 33 33 H 1.09007 * 109.04051 * 95.45154 * 15 14 13 34 34 H 1.09000 * 108.96321 * 336.62236 * 15 14 13 35 35 H 1.09003 * 108.81274 * 197.73544 * 16 15 14 36 36 H 1.09009 * 108.80926 * 79.47059 * 16 15 14 37 37 H 1.09001 * 109.52305 * 333.10664 * 18 17 16 38 38 H 1.09008 * 109.52071 * 212.92433 * 18 17 16 39 39 H 1.09000 * 110.47837 * 209.98411 * 20 19 18 40 40 H 1.08998 * 110.47489 * 332.60233 * 20 19 18 41 41 H 1.09004 * 110.76611 * 280.02077 * 21 20 19 42 42 H 1.08994 * 110.92527 * 156.69818 * 21 20 19 43 43 H 1.09000 * 110.48595 * 203.18214 * 22 21 20 44 44 H 1.08996 * 110.48623 * 80.53880 * 22 21 20 45 45 H 1.09004 * 110.00585 * 264.25845 * 23 22 21 46 46 H 1.09003 * 110.00522 * 142.89765 * 23 22 21 47 47 H 1.09001 * 108.83917 * 181.30629 * 24 19 18 48 48 H 1.08990 * 108.84150 * 299.76207 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9930 -0.4015 3.7283 8 7 2.6761 -1.5187 3.8513 9 14 1.4981 0.5630 5.2496 10 1 0.1711 0.0939 5.7232 11 1 2.5076 0.3535 6.3186 12 1 1.4225 2.0081 4.9166 13 6 2.0400 -0.7214 -1.2491 14 7 1.5609 -0.0217 -2.4485 15 6 1.9388 1.3724 -2.4190 16 6 0.8523 2.2733 -3.0300 17 8 0.2672 1.7138 -4.2247 18 6 1.1360 1.1128 -5.1460 19 6 1.2265 -0.4015 -4.8453 20 6 -0.2141 -0.9226 -4.6357 21 6 -0.6628 -1.3798 -6.0450 22 6 0.6259 -2.0147 -6.6231 23 6 1.7590 -1.1032 -6.1110 24 6 2.0743 -0.6624 -3.6754 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6053 -1.7198 1.2953 29 1 3.1263 -0.7995 1.2058 30 1 2.9233 -1.8416 4.7320 31 1 1.6690 -1.7463 -1.2538 32 1 3.1300 -0.7296 -1.2444 33 1 2.8640 1.5020 -2.9806 34 1 2.1073 1.6718 -1.3846 35 1 1.2933 3.2397 -3.2741 36 1 0.0652 2.4252 -2.2912 37 1 2.1257 1.5613 -5.0595 38 1 0.7549 1.2614 -6.1565 39 1 -0.2182 -1.7640 -3.9427 40 1 -0.8592 -0.1235 -4.2706 41 1 -0.9765 -0.5265 -6.6464 42 1 -1.4614 -2.1185 -5.9788 43 1 0.5969 -2.0118 -7.7128 44 1 0.7531 -3.0296 -6.2467 45 1 2.0131 -0.3624 -6.8692 46 1 2.6363 -1.7014 -5.8647 47 1 2.1293 -1.7389 -3.5136 48 1 3.0770 -0.2854 -3.8761 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602620942.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:44 Heat of formation + Delta-G solvation = -58.661775 kcal Electronic energy + Delta-G solvation = -23846.634495 eV Core-core repulsion = 20707.682525 eV Total energy + Delta-G solvation = -3138.951970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40908 -37.51476 -36.68021 -34.22945 -32.12632 -31.28962 -29.02035 -28.40544 -26.92454 -26.32487 -25.23686 -23.52142 -22.61773 -20.91104 -20.63827 -19.12843 -18.36368 -16.73355 -16.31973 -16.03508 -15.80106 -15.52602 -14.57687 -14.28627 -14.20012 -14.10952 -13.93250 -13.64620 -13.14019 -12.64101 -12.39413 -12.25432 -11.87107 -11.61272 -11.42360 -11.19028 -11.16555 -11.02220 -10.96930 -10.83103 -10.80661 -10.76819 -10.59966 -10.44928 -10.26615 -10.22571 -10.17179 -9.57344 -9.23484 -9.11777 -8.93575 -8.32846 -7.98413 -5.97938 -3.99171 3.32874 3.39231 3.42115 3.75164 4.19377 4.48001 4.54634 4.66906 4.72344 5.04599 5.09924 5.11729 5.31720 5.34488 5.38068 5.43029 5.44920 5.50686 5.63597 5.66046 5.69536 5.74351 5.78475 5.80585 5.89173 5.92109 5.94698 6.03447 6.13409 6.17163 6.18023 6.32788 6.44077 6.50529 6.55122 6.64069 6.70362 7.01923 7.17454 7.21532 7.40493 7.43965 7.55936 7.68696 7.84332 8.02036 8.45763 9.07134 9.64347 11.13582 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030304 B = 0.003760 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.742844 B = 7445.852501 C = 7771.305501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.085 4.085 3 H 0.057 0.943 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.062 3.938 14 N -0.518 5.518 15 C 0.010 3.990 16 C 0.074 3.926 17 O -0.375 6.375 18 C 0.082 3.918 19 C -0.087 4.087 20 C -0.094 4.094 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.114 4.114 24 C 0.071 3.929 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.017 0.983 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.071 0.929 32 H 0.025 0.975 33 H 0.032 0.968 34 H 0.096 0.904 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 2.861 -20.832 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.104 4.104 3 H 0.075 0.925 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.241 5.241 15 C -0.120 4.120 16 C -0.003 4.003 17 O -0.293 6.293 18 C 0.004 3.996 19 C -0.088 4.088 20 C -0.132 4.132 21 C -0.166 4.166 22 C -0.160 4.160 23 C -0.152 4.152 24 C -0.057 4.057 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.980 2.732 -20.718 21.109 hybrid contribution 1.181 0.408 1.024 1.615 sum -1.799 3.140 -19.694 20.023 Atomic orbital electron populations 1.21576 0.95436 1.00788 1.00135 1.21356 0.96291 0.98721 0.93997 0.92486 1.19114 0.95854 0.95624 0.90373 1.21222 1.34579 1.08288 0.90974 0.92592 1.25014 0.95305 0.95101 0.99083 1.69968 1.39075 1.21261 1.23359 0.86639 0.78248 0.80416 0.82964 1.20692 1.21340 1.19922 1.22355 0.96694 0.98273 0.89116 1.61339 1.59822 1.01291 1.01687 1.22687 0.96026 0.90272 1.02973 1.23045 0.97127 0.93593 0.86490 1.87360 1.35575 1.75650 1.30747 1.22483 0.93567 0.91330 0.92189 1.20987 0.97104 0.96634 0.94107 1.22263 0.94601 1.00928 0.95363 1.22522 0.96801 0.99778 0.97460 1.22312 0.95151 0.98922 0.99617 1.22227 0.98273 0.98442 0.96251 1.21062 0.95031 0.99559 0.90037 0.94069 0.92904 0.93698 0.96509 0.97012 0.93104 0.91028 0.95631 0.95013 0.88588 0.93686 0.89088 0.94264 0.90333 0.91951 0.89718 0.91953 0.92043 0.92193 0.91825 0.91867 0.91962 0.91305 0.95343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.85 37.16 0.33 -2.02 16 2 C -0.09 -1.70 2.03 -90.62 -0.18 -1.89 16 3 H 0.06 1.14 5.78 -51.93 -0.30 0.84 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.24 8.41 -34.44 -0.29 -14.53 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.14 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.06 1.07 4.34 -3.83 -0.02 1.06 16 14 N -0.52 -7.61 3.45 -239.21 -0.83 -8.43 16 15 C 0.01 0.13 4.89 -4.71 -0.02 0.11 16 16 C 0.07 0.94 7.01 37.57 0.26 1.20 16 17 O -0.38 -4.98 8.56 -33.33 -0.29 -5.26 16 18 C 0.08 0.93 5.03 38.03 0.19 1.12 16 19 C -0.09 -0.98 0.64 -155.11 -0.10 -1.08 16 20 C -0.09 -1.13 5.43 -24.92 -0.14 -1.27 16 21 C -0.13 -1.27 6.88 -24.80 -0.17 -1.44 16 22 C -0.12 -1.09 6.82 -25.14 -0.17 -1.26 16 23 C -0.11 -1.06 6.02 -25.49 -0.15 -1.21 16 24 C 0.07 0.91 3.52 -6.39 -0.02 0.88 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 1.09 6.95 -51.93 -0.36 0.72 16 27 H 0.04 0.78 7.59 -51.93 -0.39 0.39 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.42 6.73 -51.93 -0.35 0.07 16 34 H 0.10 1.44 5.02 -51.93 -0.26 1.18 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.09 1.19 8.14 -51.92 -0.42 0.76 16 37 H 0.04 0.43 7.19 -51.93 -0.37 0.06 16 38 H 0.08 0.79 7.77 -51.92 -0.40 0.39 16 39 H 0.06 0.83 7.94 -51.93 -0.41 0.41 16 40 H 0.08 1.18 6.49 -51.93 -0.34 0.84 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.53 7.41 -51.93 -0.38 0.14 16 46 H 0.06 0.57 7.75 -51.93 -0.40 0.17 16 47 H 0.07 0.90 7.80 -51.93 -0.41 0.49 16 48 H 0.03 0.36 7.37 -51.93 -0.38 -0.02 16 LS Contribution 352.61 15.07 5.31 5.31 Total: -1.00 -29.14 352.61 -9.71 -38.84 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -8.92 Total: -2.65 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -0.70 Total: -18.25 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.09 Total: -34.63 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.29 Total: -5.26 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.14 -9.71 -38.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602620942.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.819 kcal (2) G-P(sol) polarization free energy of solvation -29.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds