Wall clock time and date at job start Tue Mar 31 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46705 * 2 1 4 4 C 1.52996 * 109.46936 * 240.00100 * 2 1 3 5 5 C 1.50702 * 109.47134 * 65.00096 * 4 2 1 6 6 H 1.07995 * 120.00214 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99966 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99987 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99879 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47565 * 59.99882 * 9 7 5 11 11 H 1.48503 * 109.46968 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47170 * 299.99454 * 9 7 5 13 13 C 1.53001 * 109.47220 * 120.00211 * 2 1 3 14 14 N 1.46901 * 109.47103 * 185.34144 * 13 2 1 15 15 C 1.40462 * 111.00023 * 75.68564 * 14 13 2 16 16 C 1.54208 * 111.79264 * 188.25426 * 15 14 13 17 17 O 1.40632 * 109.14756 * 282.48236 * 16 15 14 18 18 C 1.44074 * 116.62038 * 93.92805 * 17 16 15 19 19 C 1.53642 * 112.50531 * 318.18484 * 18 17 16 20 20 C 1.54273 * 108.73483 * 196.63487 * 19 18 17 21 21 C 1.54894 * 104.20523 * 219.20216 * 20 19 18 22 22 C 1.54878 * 102.74814 * 37.95288 * 21 20 19 23 23 C 1.53923 * 108.86028 * 80.90231 * 19 18 17 24 24 C 1.47662 * 110.99805 * 203.87649 * 14 13 2 25 25 H 1.08994 * 109.47104 * 294.55142 * 1 2 3 26 26 H 1.08997 * 109.47059 * 54.55946 * 1 2 3 27 27 H 1.09007 * 109.46996 * 174.55671 * 1 2 3 28 28 H 1.08998 * 109.47655 * 304.99607 * 4 2 1 29 29 H 1.09001 * 109.46881 * 184.99696 * 4 2 1 30 30 H 0.96999 * 120.00438 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46743 * 305.33973 * 13 2 1 32 32 H 1.08997 * 109.47142 * 65.33452 * 13 2 1 33 33 H 1.08998 * 109.01647 * 308.85189 * 15 14 13 34 34 H 1.08998 * 109.01458 * 67.73870 * 15 14 13 35 35 H 1.09001 * 109.52404 * 42.38508 * 16 15 14 36 36 H 1.09004 * 109.52610 * 162.58370 * 16 15 14 37 37 H 1.08997 * 108.87573 * 78.97109 * 18 17 16 38 38 H 1.09001 * 108.87086 * 197.40926 * 18 17 16 39 39 H 1.09000 * 110.48616 * 337.88079 * 20 19 18 40 40 H 1.08999 * 110.48570 * 100.52485 * 20 19 18 41 41 H 1.08998 * 110.75641 * 279.63358 * 21 20 19 42 42 H 1.09005 * 110.90936 * 156.34407 * 21 20 19 43 43 H 1.09006 * 110.48614 * 203.35634 * 22 21 20 44 44 H 1.09003 * 110.48961 * 80.71831 * 22 21 20 45 45 H 1.09003 * 110.03161 * 236.37535 * 23 19 18 46 46 H 1.09001 * 110.03299 * 357.80148 * 23 19 18 47 47 H 1.09004 * 109.57892 * 273.73771 * 24 14 13 48 48 H 1.08998 * 109.58157 * 34.13727 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6772 -1.5181 -3.8511 9 14 1.4996 0.5635 -5.2495 10 1 2.0917 1.9239 -5.1865 11 1 1.9945 -0.1366 -6.4621 12 1 0.0197 0.6701 -5.3096 13 6 2.0401 -0.7213 1.2492 14 7 3.5034 -0.6106 1.3154 15 6 3.8929 0.6739 1.7292 16 6 5.4170 0.8762 1.6100 17 8 6.0533 0.2323 2.6862 18 6 6.5123 -1.1133 2.4532 19 6 5.4982 -1.9516 1.6598 20 6 5.8582 -3.4435 1.8162 21 6 5.5997 -4.0461 0.4129 22 6 6.0830 -2.9216 -0.5362 23 6 5.6408 -1.6200 0.1635 24 6 4.0812 -1.7071 2.1180 25 1 -0.3633 0.4270 0.9347 26 1 -0.3633 0.5959 -0.8372 27 1 -0.3633 -1.0231 -0.0975 28 1 1.6055 -1.7198 -1.2952 29 1 3.1263 -0.7994 -1.2056 30 1 2.9251 -1.8407 -4.7317 31 1 1.6007 -0.2656 2.1366 32 1 1.7569 -1.7728 1.2027 33 1 3.3867 1.4150 1.1106 34 1 3.5969 0.8172 2.7684 35 1 5.7687 0.4496 0.6706 36 1 5.6462 1.9416 1.6359 37 1 7.4495 -1.0751 1.8979 38 1 6.6934 -1.5954 3.4139 39 1 6.9067 -3.5560 2.0924 40 1 5.2145 -3.9155 2.5585 41 1 4.5379 -4.2446 0.2674 42 1 6.1846 -4.9540 0.2656 43 1 5.6035 -3.0127 -1.5108 44 1 7.1677 -2.9496 -0.6396 45 1 4.6838 -1.2868 -0.2380 46 1 6.3950 -0.8456 0.0229 47 1 4.0811 -1.4278 3.1717 48 1 3.4908 -2.6126 1.9781 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602620943.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:46 Heat of formation + Delta-G solvation = -50.837289 kcal Electronic energy + Delta-G solvation = -24592.472692 eV Core-core repulsion = 21453.860018 eV Total energy + Delta-G solvation = -3138.612674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.45313 -37.12926 -36.65216 -34.16434 -32.00009 -31.19245 -28.72778 -28.28637 -26.96010 -26.41992 -24.94862 -22.96883 -22.54012 -21.26516 -20.25636 -18.79155 -18.49080 -16.49262 -16.36413 -16.04701 -15.33143 -15.12014 -14.58925 -14.50044 -14.13780 -13.94007 -13.57864 -13.30598 -12.84014 -12.59492 -12.32624 -12.02430 -11.87870 -11.56775 -11.47178 -11.28731 -11.04954 -10.83912 -10.81094 -10.77442 -10.62070 -10.58047 -10.37312 -10.29807 -10.11610 -9.94715 -9.72166 -9.51970 -9.27266 -9.01181 -8.83702 -8.21400 -7.62474 -5.88602 -3.88408 3.37514 3.42260 3.44626 3.98682 4.23085 4.53916 4.71877 4.86697 4.93502 5.26169 5.35338 5.43168 5.45562 5.47136 5.56750 5.59849 5.67726 5.73646 5.78856 5.83602 5.89126 5.91975 5.94591 6.05078 6.08821 6.11017 6.22791 6.25244 6.27751 6.31466 6.37370 6.41399 6.54161 6.56188 6.61140 6.70964 7.01274 7.05708 7.18202 7.32402 7.47697 7.62246 7.82784 7.86542 8.07931 8.22240 8.57928 9.18732 9.73518 11.22048 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016688 B = 0.005891 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.411657 B = 4751.661360 C = 5400.113235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.085 4.085 3 H 0.055 0.945 4 C 0.038 3.962 5 C -0.513 4.513 6 H 0.050 0.950 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.069 3.931 14 N -0.537 5.537 15 C 0.047 3.953 16 C 0.048 3.952 17 O -0.393 6.393 18 C 0.074 3.926 19 C -0.092 4.092 20 C -0.110 4.110 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.125 4.125 24 C 0.081 3.919 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.007 0.993 29 H 0.034 0.966 30 H 0.257 0.743 31 H 0.019 0.981 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.019 0.981 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.122 0.878 46 H 0.052 0.948 47 H 0.035 0.965 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.201 -1.741 12.570 14.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.104 4.104 3 H 0.073 0.927 4 C 0.001 3.999 5 C -0.552 4.552 6 H 0.068 0.932 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.711 3.289 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.205 1.205 13 C -0.057 4.057 14 N -0.259 5.259 15 C -0.083 4.083 16 C -0.029 4.029 17 O -0.312 6.312 18 C -0.002 4.002 19 C -0.093 4.093 20 C -0.148 4.148 21 C -0.158 4.158 22 C -0.162 4.162 23 C -0.162 4.162 24 C -0.046 4.046 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.026 0.974 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.037 0.963 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.140 0.860 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.482 -1.805 12.181 13.915 hybrid contribution -0.566 0.475 -0.410 0.846 sum 5.915 -1.330 11.770 13.240 Atomic orbital electron populations 1.21692 0.96550 1.01168 0.99543 1.21256 0.94102 0.99275 0.95752 0.92670 1.19056 0.97283 0.94369 0.89185 1.21277 1.34342 1.08160 0.91413 0.93173 1.24954 0.95510 0.95054 0.98721 1.69949 1.39070 1.21128 1.23106 0.86814 0.78771 0.80246 0.83030 1.20475 1.21491 1.20522 1.22266 0.85272 1.00800 0.97405 1.58978 1.10108 1.02462 1.54396 1.21584 0.96767 0.91829 0.98146 1.22839 0.91490 0.96844 0.91680 1.87443 1.77205 1.27322 1.39188 1.23124 0.95293 0.82144 0.99632 1.21613 0.94928 0.95182 0.97531 1.22417 1.00665 0.93901 0.97848 1.22432 1.01453 0.97567 0.94324 1.22351 0.99368 0.94931 0.99513 1.22766 1.04770 0.96296 0.92332 1.21764 0.94224 0.94299 0.94326 0.95394 0.92103 0.93574 0.97423 0.94783 0.93294 0.96237 0.91557 0.89797 0.96279 0.90089 0.89958 0.93310 0.90348 0.91850 0.91914 0.91249 0.92316 0.90862 0.93102 0.86023 0.92979 0.94673 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.91 37.16 0.33 -2.12 16 2 C -0.08 -1.69 2.37 -90.62 -0.21 -1.90 16 3 H 0.05 1.12 6.59 -51.93 -0.34 0.78 16 4 C 0.04 0.94 4.39 -27.88 -0.12 0.82 16 5 C -0.51 -14.11 8.48 -34.44 -0.29 -14.40 16 6 H 0.05 1.36 7.06 -52.49 -0.37 0.99 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 9 Si 0.88 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.07 1.18 4.42 -3.82 -0.02 1.16 16 14 N -0.54 -8.71 1.51 -239.57 -0.36 -9.07 16 15 C 0.05 0.72 4.95 -6.53 -0.03 0.69 16 16 C 0.05 0.70 6.38 37.79 0.24 0.94 16 17 O -0.39 -5.80 10.15 -34.28 -0.35 -6.15 16 18 C 0.07 0.96 5.37 37.49 0.20 1.16 16 19 C -0.09 -1.24 0.60 -154.08 -0.09 -1.33 16 20 C -0.11 -1.30 5.63 -25.07 -0.14 -1.44 16 21 C -0.12 -1.59 6.91 -24.74 -0.17 -1.76 16 22 C -0.12 -1.88 6.83 -25.09 -0.17 -2.05 16 23 C -0.12 -1.97 4.20 -25.59 -0.11 -2.08 16 24 C 0.08 1.18 4.52 -4.45 -0.02 1.16 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 1.21 7.12 -51.93 -0.37 0.84 16 27 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.03 0.89 5.83 -51.93 -0.30 0.59 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.02 0.31 7.98 -51.93 -0.41 -0.11 16 32 H 0.07 1.14 7.46 -51.93 -0.39 0.75 16 33 H 0.08 1.35 6.40 -51.93 -0.33 1.01 16 34 H 0.02 0.30 8.09 -51.93 -0.42 -0.12 16 35 H 0.08 1.25 4.31 -51.93 -0.22 1.03 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.61 7.72 -51.93 -0.40 0.21 16 38 H 0.08 0.90 7.99 -51.93 -0.41 0.48 16 39 H 0.06 0.67 7.78 -51.93 -0.40 0.26 16 40 H 0.06 0.68 7.73 -51.93 -0.40 0.28 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.12 2.36 4.31 -51.93 -0.22 2.14 16 46 H 0.05 0.81 5.65 -51.93 -0.29 0.52 16 47 H 0.04 0.51 7.66 -51.93 -0.40 0.11 16 48 H 0.07 1.07 7.02 -51.93 -0.36 0.71 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -28.60 345.37 -9.08 -37.67 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.58 Total: 0.88 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -0.71 Total: -19.62 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.37 Total: -34.59 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.35 Total: -6.15 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.60 -9.08 -37.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602620943.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.166 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds