Wall clock time and date at job start Tue Mar 31 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.46602 * 2 1 4 4 C 1.53000 * 109.47500 * 120.00173 * 2 1 3 5 5 C 1.50703 * 109.46742 * 294.99931 * 4 2 1 6 6 H 1.07995 * 120.00086 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99583 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99967 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00018 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47225 * 89.99675 * 9 7 5 11 11 H 1.48496 * 109.46942 * 210.00091 * 9 7 5 12 12 H 1.48501 * 109.46892 * 329.99939 * 9 7 5 13 13 C 1.53000 * 109.47371 * 240.00474 * 2 1 3 14 14 N 1.46900 * 109.47482 * 178.02551 * 13 2 1 15 15 C 1.46848 * 110.99776 * 183.78357 * 14 13 2 16 16 C 1.53044 * 109.51656 * 185.84097 * 15 14 13 17 17 C 1.53113 * 109.27628 * 300.81236 * 16 15 14 18 18 C 1.53002 * 109.52114 * 177.56249 * 17 16 15 19 19 H 1.09001 * 110.27365 * 59.42612 * 18 17 16 20 20 C 1.54951 * 110.39500 * 181.57849 * 18 17 16 21 21 C 1.55302 * 100.94170 * 155.40653 * 20 18 17 22 22 C 1.54392 * 102.25186 * 325.86356 * 21 20 18 23 23 O 1.43237 * 107.58547 * 21.36028 * 22 21 20 24 24 C 1.53120 * 109.21173 * 57.63355 * 17 16 15 25 25 C 1.46849 * 110.99684 * 307.99202 * 14 13 2 26 26 H 1.09003 * 109.47681 * 65.08415 * 1 2 3 27 27 H 1.09002 * 109.46807 * 185.08372 * 1 2 3 28 28 H 1.08998 * 109.47410 * 305.07544 * 1 2 3 29 29 H 1.08993 * 109.47276 * 55.00233 * 4 2 1 30 30 H 1.08999 * 109.46839 * 175.00625 * 4 2 1 31 31 H 0.97002 * 120.00093 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.47128 * 58.01956 * 13 2 1 33 33 H 1.09002 * 109.46870 * 298.03035 * 13 2 1 34 34 H 1.08992 * 109.46878 * 65.82145 * 15 14 13 35 35 H 1.08998 * 109.46129 * 305.85045 * 15 14 13 36 36 H 1.09005 * 109.49853 * 180.87804 * 16 15 14 37 37 H 1.08996 * 109.50661 * 60.76484 * 16 15 14 38 38 H 1.08994 * 109.52727 * 297.69120 * 17 16 15 39 39 H 1.08998 * 111.12304 * 273.32005 * 20 18 17 40 40 H 1.08997 * 111.12073 * 37.48378 * 20 18 17 41 41 H 1.09001 * 110.84440 * 207.67900 * 21 20 18 42 42 H 1.08998 * 111.02963 * 84.13470 * 21 20 18 43 43 H 1.08998 * 109.82685 * 261.84548 * 22 21 20 44 44 H 1.08998 * 109.90294 * 140.91835 * 22 21 20 45 45 H 1.09001 * 109.50748 * 62.31102 * 24 17 16 46 46 H 1.08997 * 109.50530 * 182.43282 * 24 17 16 47 47 H 1.09005 * 109.46202 * 294.17365 * 25 14 13 48 48 H 1.09001 * 109.46342 * 54.14216 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9925 -0.4023 3.7283 8 7 2.6757 -1.5193 3.8510 9 14 1.4978 0.5620 5.2497 10 1 0.1704 0.0937 5.7227 11 1 2.5068 0.3518 6.3187 12 1 1.4229 2.0074 4.9170 13 6 2.0400 -0.7211 -1.2493 14 7 3.5082 -0.6800 -1.2734 15 6 4.0314 -1.2849 -2.5050 16 6 5.5584 -1.3564 -2.4308 17 6 6.1226 0.0560 -2.2541 18 6 7.6449 -0.0149 -2.1184 19 1 8.0823 -0.4732 -3.0053 20 6 8.2340 1.4014 -1.8988 21 6 9.5625 1.0585 -1.1712 22 6 9.1695 -0.1806 -0.3382 23 8 8.0067 -0.7578 -0.9434 24 6 5.5250 0.6830 -0.9915 25 6 3.9989 0.6940 -1.1066 26 1 -0.3634 0.4329 -0.9320 27 1 -0.3633 -1.0237 0.0911 28 1 -0.3634 0.5905 0.8410 29 1 1.6055 -1.7198 1.2951 30 1 3.1264 -0.7993 1.2055 31 1 2.9230 -1.8423 4.7316 32 1 1.6480 -0.2281 -2.1389 33 1 1.7058 -1.7585 -1.2319 34 1 3.7374 -0.6779 -3.3612 35 1 3.6258 -2.2904 -2.6164 36 1 5.9475 -1.7912 -3.3515 37 1 5.8530 -1.9748 -1.5829 38 1 5.8621 0.6634 -3.1208 39 1 8.4240 1.8995 -2.8495 40 1 7.5830 2.0036 -1.2650 41 1 9.8729 1.8786 -0.5237 42 1 10.3477 0.8124 -1.8860 43 1 8.9439 0.1184 0.6854 44 1 9.9853 -0.9034 -0.3409 45 1 5.8191 0.0977 -0.1202 46 1 5.8902 1.7044 -0.8846 47 1 3.7050 1.2919 -1.9695 48 1 3.5695 1.1258 -0.2026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602626019.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:54 Heat of formation + Delta-G solvation = -66.717094 kcal Electronic energy + Delta-G solvation = -23517.872558 eV Core-core repulsion = 20378.571284 eV Total energy + Delta-G solvation = -3139.301274 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.97369 -38.35466 -35.46312 -33.07183 -32.16965 -31.69644 -30.45872 -28.70027 -26.90058 -25.49097 -23.55792 -23.19833 -22.33194 -21.59466 -20.77432 -19.28521 -18.53866 -16.72245 -16.26957 -16.09015 -15.47760 -14.68863 -14.58793 -14.33463 -14.11851 -13.94981 -13.64906 -13.27500 -13.07715 -12.76054 -12.36816 -12.21372 -11.86222 -11.78213 -11.67780 -11.40226 -11.26514 -11.21527 -10.97599 -10.80898 -10.78783 -10.75820 -10.48603 -10.36959 -10.25869 -9.91397 -9.88622 -9.50808 -9.30349 -8.99000 -8.75752 -8.18949 -7.65304 -5.83347 -3.84241 3.39172 3.45600 3.48210 3.82686 4.38507 4.40840 4.57497 4.61063 4.79405 4.98269 5.06069 5.09076 5.23477 5.37017 5.50547 5.52025 5.54391 5.63095 5.66566 5.70500 5.74427 5.78088 5.82164 5.87727 5.88297 5.99024 6.01415 6.12773 6.13351 6.22565 6.32511 6.34261 6.41644 6.52852 6.57486 6.64956 6.82402 7.03925 7.10590 7.12463 7.35446 7.68922 7.72247 7.91330 8.12512 8.27371 8.61971 9.24122 9.77740 11.27521 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015323 B = 0.004774 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.877073 B = 5863.171517 C = 7069.088564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 H 0.057 0.943 4 C 0.035 3.965 5 C -0.514 4.514 6 H 0.051 0.949 7 C 0.057 3.943 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.066 3.934 14 N -0.523 5.523 15 C 0.058 3.942 16 C -0.107 4.107 17 C -0.084 4.084 18 C 0.088 3.912 19 H 0.064 0.936 20 C -0.157 4.157 21 C -0.156 4.156 22 C 0.050 3.950 23 O -0.368 6.368 24 C -0.108 4.108 25 C 0.054 3.946 26 H 0.027 0.973 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.010 0.990 30 H 0.034 0.966 31 H 0.257 0.743 32 H 0.013 0.987 33 H 0.068 0.932 34 H 0.021 0.979 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.018 0.982 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.781 4.582 -14.909 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 H 0.075 0.925 4 C -0.002 4.002 5 C -0.553 4.553 6 H 0.069 0.931 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.712 3.288 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.062 4.062 14 N -0.247 5.247 15 C -0.070 4.070 16 C -0.144 4.144 17 C -0.103 4.103 18 C 0.030 3.970 19 H 0.082 0.918 20 C -0.194 4.194 21 C -0.193 4.193 22 C -0.027 4.027 23 O -0.287 6.287 24 C -0.146 4.146 25 C -0.074 4.074 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.028 0.972 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.078 0.922 47 H 0.036 0.964 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.925 4.004 -14.307 18.441 hybrid contribution -0.384 1.134 0.158 1.207 sum 10.541 5.137 -14.149 18.377 Atomic orbital electron populations 1.21685 0.96446 1.01227 0.99522 1.21366 0.94493 0.99181 0.95900 0.92480 1.19059 0.97522 0.94542 0.89036 1.21319 1.34358 1.08178 0.91443 0.93096 1.24981 0.95496 0.95065 0.98785 1.69986 1.39038 1.21171 1.23017 0.86741 0.78147 0.80459 0.83487 1.20911 1.21403 1.20096 1.22220 0.86198 1.00714 0.97058 1.61822 1.08863 1.18972 1.35067 1.22038 0.95274 0.99240 0.90496 1.21548 0.94419 0.96456 1.02019 1.21332 0.92499 0.97624 0.98851 1.22968 0.95187 0.90206 0.88619 0.91776 1.23410 0.96576 0.98013 1.01428 1.23100 0.98014 0.98629 0.99590 1.23089 0.88317 0.94054 0.97226 1.88494 1.45484 1.53587 1.41157 1.21631 0.94597 0.99978 0.98395 1.22173 0.95102 0.89149 1.00990 0.95410 0.93479 0.92090 0.97166 0.94732 0.93292 0.96855 0.91404 0.96080 0.91206 0.92449 0.89988 0.91089 0.90378 0.89490 0.90248 0.90953 0.91240 0.91847 0.89745 0.92232 0.96424 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.92 37.15 0.33 -2.19 16 2 C -0.09 -1.90 1.85 -90.62 -0.17 -2.06 16 3 H 0.06 1.20 6.07 -51.92 -0.32 0.88 16 4 C 0.04 0.93 4.30 -27.88 -0.12 0.81 16 5 C -0.51 -14.64 8.47 -34.44 -0.29 -14.93 16 6 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 9 Si 0.88 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 C 0.07 1.19 4.54 -3.82 -0.02 1.18 16 14 N -0.52 -9.31 4.00 -234.65 -0.94 -10.25 16 15 C 0.06 0.85 5.46 -3.83 -0.02 0.83 16 16 C -0.11 -1.46 5.29 -26.65 -0.14 -1.60 16 17 C -0.08 -1.07 2.21 -90.50 -0.20 -1.27 16 18 C 0.09 1.02 3.17 -25.70 -0.08 0.94 16 19 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 20 C -0.16 -1.50 6.46 -24.48 -0.16 -1.66 16 21 C -0.16 -1.37 7.02 -24.78 -0.17 -1.54 16 22 C 0.05 0.56 7.79 37.89 0.30 0.85 16 23 O -0.37 -5.20 9.72 -35.23 -0.34 -5.55 16 24 C -0.11 -1.62 4.90 -26.64 -0.13 -1.75 16 25 C 0.05 0.90 4.99 -3.83 -0.02 0.88 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 1.24 7.10 -51.93 -0.37 0.87 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.03 0.98 7.47 -51.93 -0.39 0.59 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 1.01 8.12 -51.93 -0.42 0.58 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.33 7.74 -51.93 -0.40 0.93 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.89 5.88 -51.93 -0.31 0.59 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 46 H 0.06 0.79 6.23 -51.93 -0.32 0.47 16 47 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.09 1.78 5.74 -51.93 -0.30 1.48 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -31.06 358.15 -10.22 -41.29 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -9.06 Total: -1.22 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -0.99 Total: -19.95 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.20 Total: -37.03 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.34 Total: -5.55 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.06 -10.22 -41.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602626019.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.428 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds