Wall clock time and date at job start Tue Mar 31 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47400 * 2 1 4 4 C 1.52997 * 109.47321 * 239.99417 * 2 1 3 5 5 C 1.50703 * 109.47046 * 65.00115 * 4 2 1 6 6 H 1.08007 * 119.99900 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00106 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00172 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99949 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47151 * 60.00345 * 9 7 5 11 11 H 1.48499 * 109.47012 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47141 * 300.00377 * 9 7 5 13 13 C 1.53008 * 109.46992 * 119.99535 * 2 1 3 14 14 N 1.46901 * 109.47195 * 181.98936 * 13 2 1 15 15 C 1.46843 * 110.99902 * 52.00441 * 14 13 2 16 16 C 1.53037 * 109.52379 * 185.84358 * 15 14 13 17 17 C 1.53120 * 109.27571 * 300.81992 * 16 15 14 18 18 C 1.52996 * 109.52555 * 177.55967 * 17 16 15 19 19 H 1.09004 * 110.33608 * 187.56583 * 18 17 16 20 20 C 1.54482 * 110.37371 * 65.31399 * 18 17 16 21 21 C 1.54506 * 104.06664 * 217.19144 * 20 18 17 22 22 C 1.54478 * 104.06131 * 0.02562 * 21 20 18 23 23 O 1.44423 * 110.37142 * 309.93770 * 18 17 16 24 24 C 1.53121 * 109.16244 * 57.65391 * 17 16 15 25 25 C 1.46844 * 110.99798 * 176.21533 * 14 13 2 26 26 H 1.08997 * 109.46859 * 64.81080 * 1 2 3 27 27 H 1.08998 * 109.47421 * 184.81644 * 1 2 3 28 28 H 1.09002 * 109.46992 * 304.81628 * 1 2 3 29 29 H 1.08995 * 109.47478 * 185.00013 * 4 2 1 30 30 H 1.09005 * 109.47258 * 305.00485 * 4 2 1 31 31 H 0.96999 * 120.00284 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47066 * 301.98868 * 13 2 1 33 33 H 1.08997 * 109.46646 * 61.98801 * 13 2 1 34 34 H 1.09006 * 109.46314 * 305.85644 * 15 14 13 35 35 H 1.08992 * 109.46602 * 65.82389 * 15 14 13 36 36 H 1.08996 * 109.50726 * 180.88238 * 16 15 14 37 37 H 1.09000 * 109.54021 * 60.77416 * 16 15 14 38 38 H 1.09005 * 109.52392 * 297.75212 * 17 16 15 39 39 H 1.09002 * 110.51063 * 335.83807 * 20 18 17 40 40 H 1.09002 * 110.50726 * 98.40772 * 20 18 17 41 41 H 1.08998 * 110.50936 * 118.64069 * 21 20 18 42 42 H 1.09001 * 110.51140 * 241.21746 * 21 20 18 43 43 H 1.08997 * 110.37745 * 142.81131 * 22 21 20 44 44 H 1.09007 * 110.37243 * 265.03791 * 22 21 20 45 45 H 1.08994 * 109.50600 * 182.40737 * 24 17 16 46 46 H 1.08997 * 109.53190 * 62.30651 * 24 17 16 47 47 H 1.09002 * 109.46149 * 294.17173 * 25 14 13 48 48 H 1.09001 * 109.46279 * 54.14376 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.6414 0.0569 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4020 -3.7282 8 7 2.6765 -1.5190 -3.8510 9 14 1.4986 0.5623 -5.2496 10 1 2.0897 1.9232 -5.1871 11 1 1.9948 -0.1371 -6.4620 12 1 0.0186 0.6678 -5.3092 13 6 2.0400 -0.7212 1.2494 14 7 3.5082 -0.6797 1.2737 15 6 3.9987 0.6943 1.1070 16 6 5.5246 0.6822 0.9913 17 6 6.1224 0.0567 2.2547 18 6 7.6447 -0.0139 2.1192 19 1 8.0732 -0.5761 2.9489 20 6 8.2464 1.4079 2.0654 21 6 9.4068 1.2866 1.0526 22 6 9.3687 -0.1941 0.6137 23 8 8.0098 -0.6169 0.8587 24 6 5.5584 -1.3558 2.4313 25 6 4.0314 -1.2846 2.5053 26 1 -0.3633 0.4374 -0.9299 27 1 -0.3634 -1.0240 0.0863 28 1 -0.3633 0.5868 0.8437 29 1 3.1263 -0.7996 -1.2055 30 1 1.6054 -1.7199 -1.2950 31 1 2.9244 -1.8416 -4.7315 32 1 1.6478 -0.2283 2.1389 33 1 1.7060 -1.7586 1.2317 34 1 3.5693 1.1261 0.2029 35 1 3.7046 1.2921 1.9697 36 1 5.8896 1.7036 0.8834 37 1 5.8196 0.0964 0.1208 38 1 5.8606 0.6644 3.1209 39 1 7.5041 2.1236 1.7118 40 1 8.6215 1.7012 3.0459 41 1 9.2382 1.9422 0.1983 42 1 10.3576 1.5213 1.5312 43 1 9.6088 -0.2822 -0.4458 44 1 10.0642 -0.7847 1.2100 45 1 5.9473 -1.7905 3.3521 46 1 5.8532 -1.9746 1.5839 47 1 3.7372 -0.6775 3.3614 48 1 3.6258 -2.2902 2.6167 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602626022.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:56 Heat of formation + Delta-G solvation = -67.115690 kcal Electronic energy + Delta-G solvation = -23494.215072 eV Core-core repulsion = 20354.896513 eV Total energy + Delta-G solvation = -3139.318559 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.94839 -38.36034 -35.46842 -33.06864 -32.11711 -31.68058 -30.46287 -28.64658 -26.88765 -25.49317 -23.61681 -23.17392 -22.35857 -21.66337 -20.64671 -19.35472 -18.51743 -16.41636 -16.23327 -16.08894 -15.49759 -15.03636 -14.61421 -14.33683 -14.10323 -13.88505 -13.60363 -13.32206 -13.06486 -12.77989 -12.36657 -12.12339 -11.84291 -11.76374 -11.65561 -11.36271 -11.28918 -11.18512 -10.90962 -10.78376 -10.77919 -10.74839 -10.41716 -10.38035 -10.23725 -9.94650 -9.88430 -9.64848 -9.41595 -8.98795 -8.76462 -8.18015 -7.65244 -5.82542 -3.83484 3.41067 3.45764 3.47688 3.90369 4.39239 4.50909 4.58139 4.60909 4.83702 4.93923 5.03084 5.10493 5.23692 5.35599 5.50455 5.52718 5.56532 5.59268 5.68288 5.71452 5.73534 5.76893 5.82924 5.88740 5.89404 5.96479 5.99509 6.11651 6.14411 6.20198 6.32194 6.34788 6.41022 6.53753 6.55118 6.65296 6.85280 6.92220 7.04752 7.12223 7.36489 7.69014 7.72175 7.91790 8.13237 8.28239 8.62513 9.24609 9.78365 11.28325 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.004738 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.156744 B = 5908.412954 C = 7102.903250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 H 0.057 0.943 4 C 0.036 3.964 5 C -0.516 4.516 6 H 0.051 0.949 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.066 3.934 14 N -0.523 5.523 15 C 0.053 3.947 16 C -0.106 4.106 17 C -0.080 4.080 18 C 0.081 3.919 19 H 0.063 0.937 20 C -0.154 4.154 21 C -0.155 4.155 22 C 0.043 3.957 23 O -0.357 6.357 24 C -0.108 4.108 25 C 0.058 3.942 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.034 0.966 30 H 0.010 0.990 31 H 0.258 0.742 32 H 0.013 0.987 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.018 0.982 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.021 0.979 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.925 4.217 15.215 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 H 0.075 0.925 4 C -0.001 4.001 5 C -0.554 4.554 6 H 0.069 0.931 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.712 3.288 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.205 1.205 13 C -0.062 4.062 14 N -0.247 5.247 15 C -0.075 4.075 16 C -0.144 4.144 17 C -0.099 4.099 18 C 0.023 3.977 19 H 0.081 0.919 20 C -0.192 4.192 21 C -0.193 4.193 22 C -0.034 4.034 23 O -0.276 6.276 24 C -0.146 4.146 25 C -0.070 4.070 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.040 0.960 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.038 3.676 14.553 18.632 hybrid contribution -0.360 1.109 -0.066 1.167 sum 10.678 4.785 14.488 18.623 Atomic orbital electron populations 1.21714 0.96466 1.00383 1.00556 1.21364 0.94491 0.99195 0.95881 0.92464 1.19045 0.97518 0.94560 0.89021 1.21281 1.34495 1.08165 0.91459 0.93127 1.24974 0.95490 0.95048 0.98770 1.69970 1.38967 1.21124 1.23145 0.86803 0.78747 0.80207 0.83045 1.20469 1.21460 1.20480 1.22221 0.86179 1.00672 0.97107 1.61823 1.08890 1.19019 1.35010 1.22183 0.95184 0.89098 1.00994 1.21566 0.94357 1.00114 0.98320 1.21270 0.91968 0.97595 0.99028 1.23004 0.95622 0.91907 0.87174 0.91891 1.23049 0.98161 0.98443 0.99528 1.22919 0.98774 0.97893 0.99669 1.23356 0.85094 0.93319 1.01626 1.89245 1.27879 1.72098 1.38346 1.21587 0.94627 0.96458 1.01941 1.22028 0.95162 0.99275 0.90556 0.91600 0.93757 0.95404 0.94725 0.97182 0.93228 0.96858 0.91412 0.88895 0.96433 0.92301 0.89555 0.91009 0.90092 0.91044 0.90661 0.91009 0.89177 0.92783 0.92419 0.90114 0.96043 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.08 37.16 0.34 -2.24 16 2 C -0.09 -1.90 1.85 -90.62 -0.17 -2.07 16 3 H 0.06 1.21 6.07 -51.93 -0.32 0.89 16 4 C 0.04 0.94 4.30 -27.88 -0.12 0.82 16 5 C -0.52 -14.69 8.34 -34.44 -0.29 -14.98 16 6 H 0.05 1.40 7.08 -52.48 -0.37 1.03 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 9 Si 0.88 22.13 29.54 -169.99 -5.02 17.11 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.07 1.20 4.54 -3.82 -0.02 1.18 16 14 N -0.52 -9.33 4.00 -234.67 -0.94 -10.27 16 15 C 0.05 0.89 5.00 -3.84 -0.02 0.88 16 16 C -0.11 -1.61 4.95 -26.65 -0.13 -1.75 16 17 C -0.08 -1.02 2.11 -90.50 -0.19 -1.21 16 18 C 0.08 0.94 2.96 -25.96 -0.08 0.86 16 19 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 20 C -0.15 -1.50 6.48 -25.16 -0.16 -1.66 16 21 C -0.15 -1.42 7.09 -25.17 -0.18 -1.59 16 22 C 0.04 0.46 7.63 37.93 0.29 0.75 16 23 O -0.36 -5.05 10.05 -35.23 -0.35 -5.40 16 24 C -0.11 -1.47 5.33 -26.65 -0.14 -1.61 16 25 C 0.06 0.85 5.46 -3.83 -0.02 0.83 16 26 H 0.07 1.37 6.83 -51.93 -0.35 1.02 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.99 7.47 -51.93 -0.39 0.60 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.79 5.74 -51.93 -0.30 1.50 16 35 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.81 6.48 -51.93 -0.34 0.47 16 37 H 0.09 1.60 7.42 -51.93 -0.39 1.21 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.83 6.17 -51.93 -0.32 0.51 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 1.29 7.96 -51.93 -0.41 0.88 16 47 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -31.11 358.54 -10.24 -41.35 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -9.08 Total: -1.16 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -0.99 Total: -20.20 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.20 Total: -37.10 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.35 Total: -5.40 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.11 -10.24 -41.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602626022.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.762 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds