Wall clock time and date at job start Tue Mar 31 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47616 * 2 1 4 4 C 1.53005 * 109.46823 * 119.99979 * 2 1 3 5 5 C 1.50705 * 109.46743 * 294.99877 * 4 2 1 6 6 H 1.08001 * 120.00164 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99855 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99855 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99820 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47152 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47243 * 60.00132 * 9 7 5 12 12 H 1.48500 * 109.47108 * 300.00008 * 9 7 5 13 13 C 1.53001 * 109.47248 * 239.99131 * 2 1 3 14 14 N 1.46901 * 109.46542 * 65.07080 * 13 2 1 15 15 C 1.46854 * 110.99792 * 199.97788 * 14 13 2 16 16 C 1.53035 * 109.52020 * 174.16174 * 15 14 13 17 17 C 1.53119 * 109.28328 * 59.18370 * 16 15 14 18 18 C 1.52995 * 109.52547 * 182.43957 * 17 16 15 19 19 H 1.09006 * 110.33315 * 61.92795 * 18 17 16 20 20 C 1.54479 * 110.37149 * 299.68057 * 18 17 16 21 21 C 1.54514 * 104.06080 * 217.18794 * 20 18 17 22 22 C 1.54473 * 104.06171 * 0.02562 * 21 20 18 23 23 O 1.44423 * 110.37370 * 184.29470 * 18 17 16 24 24 C 1.53127 * 109.15624 * 302.34177 * 17 16 15 25 25 C 1.46847 * 111.00202 * 75.77196 * 14 13 2 26 26 H 1.08999 * 109.47267 * 185.00985 * 1 2 3 27 27 H 1.08999 * 109.47287 * 305.01616 * 1 2 3 28 28 H 1.09008 * 109.46775 * 65.01334 * 1 2 3 29 29 H 1.09001 * 109.47071 * 175.00014 * 4 2 1 30 30 H 1.09001 * 109.47349 * 54.99371 * 4 2 1 31 31 H 0.96998 * 120.00476 * 359.97438 * 8 7 5 32 32 H 1.09000 * 109.47170 * 185.06337 * 13 2 1 33 33 H 1.08990 * 109.47478 * 305.07152 * 13 2 1 34 34 H 1.08997 * 109.46045 * 294.17385 * 15 14 13 35 35 H 1.08999 * 109.46118 * 54.14777 * 15 14 13 36 36 H 1.09002 * 109.50505 * 299.23131 * 16 15 14 37 37 H 1.09008 * 109.53167 * 179.13924 * 16 15 14 38 38 H 1.08998 * 109.52595 * 62.24032 * 17 16 15 39 39 H 1.08998 * 110.50876 * 335.83567 * 20 18 17 40 40 H 1.09001 * 110.51357 * 98.40889 * 20 18 17 41 41 H 1.09000 * 110.50788 * 118.64467 * 21 20 18 42 42 H 1.08993 * 110.51288 * 241.21465 * 21 20 18 43 43 H 1.09003 * 110.37252 * 142.80877 * 22 21 20 44 44 H 1.09005 * 110.37292 * 265.02977 * 22 21 20 45 45 H 1.08997 * 109.50122 * 297.71531 * 24 17 16 46 46 H 1.08995 * 109.53443 * 177.61655 * 24 17 16 47 47 H 1.09006 * 109.46074 * 305.84940 * 25 14 13 48 48 H 1.08993 * 109.46692 * 65.82033 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9931 -0.4016 3.7284 8 7 2.6762 -1.5186 3.8513 9 14 1.4995 0.5637 5.2496 10 1 1.9953 -0.1357 6.4621 11 1 0.0195 0.6704 5.3095 12 1 2.0917 1.9240 5.1864 13 6 2.0401 -0.7214 -1.2491 14 7 1.6529 0.0380 -2.4455 15 6 1.6893 -0.8115 -3.6428 16 6 1.1429 -0.0311 -4.8404 17 6 1.9929 1.2240 -5.0564 18 6 1.4150 2.0399 -6.2145 19 1 0.4025 2.3677 -5.9787 20 6 1.4213 1.2066 -7.5152 21 6 1.7684 2.2328 -8.6169 22 6 1.9314 3.5646 -7.8513 23 8 2.2598 3.1760 -6.4999 24 6 1.9775 2.0674 -3.7785 25 6 2.4997 1.2262 -2.6116 26 1 -0.3634 -1.0237 0.0897 27 1 -0.3634 0.5897 0.8416 28 1 -0.3633 0.4341 -0.9316 29 1 3.1263 -0.7995 1.2057 30 1 1.6053 -1.7198 1.2953 31 1 2.9322 -2.0200 3.0614 32 1 3.1263 -0.8006 -1.2049 33 1 1.6045 -1.7195 -1.2956 34 1 2.7176 -1.1120 -3.8437 35 1 1.0775 -1.6984 -3.4775 36 1 0.1100 0.2578 -4.6459 37 1 1.1841 -0.6564 -5.7324 38 1 3.0176 0.9344 -5.2893 39 1 2.1817 0.4273 -7.4658 40 1 0.4388 0.7694 -7.6935 41 1 2.7005 1.9608 -9.1121 42 1 0.9580 2.3032 -9.3423 43 1 2.7395 4.1545 -8.2840 44 1 0.9991 4.1291 -7.8690 45 1 0.9578 2.3894 -3.5673 46 1 2.6151 2.9415 -3.9110 47 1 2.4766 1.8193 -1.6973 48 1 3.5242 0.9161 -2.8173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602626028.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:01 Heat of formation + Delta-G solvation = -79.390269 kcal Electronic energy + Delta-G solvation = -22818.646154 eV Core-core repulsion = 19678.795330 eV Total energy + Delta-G solvation = -3139.850825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.11958 -38.60017 -35.73817 -33.53864 -32.38197 -31.77737 -30.72642 -28.79419 -26.40775 -25.73726 -23.90567 -23.25336 -22.46552 -21.73196 -20.88743 -19.77699 -18.99962 -16.79902 -16.54900 -16.30235 -15.78639 -15.11188 -14.90749 -14.44681 -14.03561 -13.90340 -13.70904 -13.56309 -13.26750 -13.04001 -12.93597 -12.27376 -12.03117 -11.90429 -11.68729 -11.65999 -11.58339 -11.27432 -11.14640 -11.02134 -10.94468 -10.76849 -10.60067 -10.39526 -10.33165 -10.10193 -10.04029 -9.94420 -9.61483 -9.34050 -8.42724 -8.25003 -7.98706 -6.27770 -3.95309 3.48224 3.50392 3.59499 3.68788 4.13342 4.27069 4.37592 4.59928 4.61338 4.71243 4.77395 4.88685 4.98096 5.11159 5.25949 5.35939 5.37898 5.40664 5.45391 5.48671 5.49227 5.59199 5.62320 5.63905 5.69928 5.71287 5.86907 5.87413 5.96537 6.05510 6.11831 6.16050 6.21217 6.35908 6.37229 6.52075 6.63909 6.69260 6.96548 7.13195 7.17471 7.39891 7.41955 7.50546 7.67304 8.33041 8.55765 8.97818 9.75987 11.12685 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.039692 B = 0.002880 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.269993 B = 9719.365895 C =10047.371233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.071 4.071 3 H 0.056 0.944 4 C 0.013 3.987 5 C -0.591 4.591 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.060 3.940 14 N -0.534 5.534 15 C 0.056 3.944 16 C -0.108 4.108 17 C -0.080 4.080 18 C 0.081 3.919 19 H 0.069 0.931 20 C -0.151 4.151 21 C -0.157 4.157 22 C 0.044 3.956 23 O -0.369 6.369 24 C -0.106 4.106 25 C 0.055 3.945 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.002 0.998 30 H 0.006 0.994 31 H 0.267 0.733 32 H 0.028 0.972 33 H 0.065 0.935 34 H 0.027 0.973 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 5.912 -25.488 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.090 4.090 3 H 0.074 0.926 4 C -0.024 4.024 5 C -0.630 4.630 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.554 5.554 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.067 4.067 14 N -0.258 5.258 15 C -0.072 4.072 16 C -0.146 4.146 17 C -0.099 4.099 18 C 0.024 3.976 19 H 0.087 0.913 20 C -0.188 4.188 21 C -0.194 4.194 22 C -0.033 4.033 23 O -0.288 6.288 24 C -0.144 4.144 25 C -0.073 4.073 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.020 0.980 30 H 0.024 0.976 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.098 0.902 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.005 6.174 -23.623 24.601 hybrid contribution 0.643 -0.417 -2.018 2.159 sum -2.362 5.757 -25.641 26.385 Atomic orbital electron populations 1.21552 0.95655 1.00460 1.00096 1.21029 0.96000 0.98967 0.92968 0.92557 1.19271 0.95066 0.95569 0.92510 1.22037 1.38458 1.10222 0.92261 0.93248 1.25818 0.94779 0.97181 1.01365 1.70774 1.36257 1.14902 1.33453 0.83575 0.76052 0.75150 0.75675 1.20890 1.21488 1.21536 1.22311 0.97565 0.96898 0.89953 1.61951 1.53835 1.07573 1.02460 1.22046 0.99001 0.95792 0.90337 1.21596 1.00147 0.95535 0.97282 1.21243 0.99810 0.94937 0.93895 1.23072 0.94170 0.85925 0.94478 0.91284 1.23006 1.02652 0.98768 0.94403 1.22944 1.02431 0.95535 0.98530 1.23363 1.00828 0.96258 0.82879 1.89153 1.61953 1.47988 1.29715 1.21568 1.02279 0.97628 0.92907 1.22112 0.93741 0.92466 0.98996 0.94427 0.92990 0.93597 0.97979 0.97608 0.92223 0.95348 0.91633 0.95441 0.90824 0.90906 0.91714 0.90928 0.90555 0.90530 0.90829 0.90702 0.89305 0.92435 0.91223 0.91200 0.90152 0.95431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.87 37.16 0.33 -2.10 16 2 C -0.07 -1.50 2.39 -90.61 -0.22 -1.71 16 3 H 0.06 1.23 6.70 -51.93 -0.35 0.89 16 4 C 0.01 0.35 3.76 -27.88 -0.10 0.24 16 5 C -0.59 -17.08 8.47 -34.44 -0.29 -17.37 16 6 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.25 16 8 N -0.92 -28.71 13.65 55.43 0.76 -27.95 16 9 Si 1.07 25.90 29.90 -169.99 -5.08 20.82 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 13 C 0.06 1.07 4.39 -3.82 -0.02 1.05 16 14 N -0.53 -8.08 3.96 -234.67 -0.93 -9.01 16 15 C 0.06 0.71 5.43 -3.83 -0.02 0.69 16 16 C -0.11 -1.10 5.10 -26.65 -0.14 -1.24 16 17 C -0.08 -0.86 1.93 -90.50 -0.17 -1.03 16 18 C 0.08 0.78 2.81 -25.96 -0.07 0.71 16 19 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 20 C -0.15 -1.14 5.59 -25.16 -0.14 -1.28 16 21 C -0.16 -1.04 7.09 -25.16 -0.18 -1.22 16 22 C 0.04 0.34 7.63 37.93 0.29 0.63 16 23 O -0.37 -4.10 10.97 -35.23 -0.39 -4.49 16 24 C -0.11 -1.31 5.25 -26.65 -0.14 -1.45 16 25 C 0.05 0.79 5.29 -3.83 -0.02 0.77 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 1.12 7.10 -51.93 -0.37 0.75 16 28 H 0.04 0.83 7.62 -51.92 -0.40 0.44 16 29 H 0.00 0.05 8.01 -51.93 -0.42 -0.36 16 30 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 31 H 0.27 8.34 7.22 -40.82 -0.29 8.05 16 32 H 0.03 0.52 8.00 -51.93 -0.42 0.11 16 33 H 0.07 1.15 7.79 -51.93 -0.40 0.75 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.55 7.22 -51.92 -0.38 0.17 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.59 7.67 -51.93 -0.40 0.19 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 47 H 0.08 1.28 6.65 -51.93 -0.35 0.93 16 48 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -31.32 361.88 -10.42 -41.74 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -9.24 Total: -3.50 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: -0.99 Total: -23.06 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.17 Total: -36.96 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.39 Total: -4.49 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.08 Total: 20.82 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.32 -10.42 -41.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602626028.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.648 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds