Wall clock time and date at job start Tue Mar 31 2020 06:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46880 * 2 1 4 4 C 1.52999 * 109.47438 * 120.00166 * 2 1 3 5 5 C 1.50710 * 109.46936 * 295.00409 * 4 2 1 6 6 H 1.08001 * 119.99774 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00013 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99766 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00223 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47291 * 59.99621 * 9 7 5 11 11 H 1.48497 * 109.47281 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46711 * 299.99801 * 9 7 5 13 13 C 1.52994 * 109.47413 * 240.00271 * 2 1 3 14 14 N 1.46900 * 109.47242 * 64.99322 * 13 2 1 15 15 C 1.46901 * 111.00192 * 180.02562 * 14 13 2 16 16 H 1.08997 * 110.03920 * 313.94079 * 15 14 13 17 17 C 1.54354 * 110.05685 * 75.45055 * 15 14 13 18 18 C 1.55280 * 104.24406 * 142.81072 * 17 15 14 19 19 C 1.54957 * 102.62569 * 322.26760 * 18 17 15 20 20 C 1.53534 * 110.05702 * 192.48562 * 15 14 13 21 21 C 1.52792 * 110.09248 * 359.95414 * 20 15 14 22 22 C 1.53165 * 109.17468 * 177.48005 * 21 20 15 23 23 O 1.42901 * 109.37024 * 303.06709 * 22 21 20 24 24 C 1.42912 * 114.19559 * 61.49710 * 23 22 21 25 25 C 1.52784 * 110.07923 * 121.39704 * 20 15 14 26 26 H 1.09000 * 109.47177 * 299.99124 * 1 2 3 27 27 H 1.08993 * 109.47730 * 60.00146 * 1 2 3 28 28 H 1.08999 * 109.46880 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46917 * 54.99702 * 4 2 1 30 30 H 1.08998 * 109.47613 * 175.00673 * 4 2 1 31 31 H 0.97006 * 119.99588 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.46839 * 305.00099 * 13 2 1 33 33 H 1.08997 * 109.47637 * 184.99497 * 13 2 1 34 34 H 1.00906 * 110.99709 * 56.05040 * 14 13 2 35 35 H 1.09003 * 110.48670 * 261.49103 * 17 15 14 36 36 H 1.09009 * 110.48214 * 24.12819 * 17 15 14 37 37 H 1.09007 * 110.88972 * 203.96564 * 18 17 15 38 38 H 1.08998 * 110.75899 * 80.51157 * 18 17 15 39 39 H 1.09004 * 110.50048 * 278.92920 * 19 18 17 40 40 H 1.08994 * 110.50606 * 156.37176 * 19 18 17 41 41 H 1.08993 * 109.51931 * 297.39192 * 21 20 15 42 42 H 1.08991 * 109.51927 * 57.57141 * 21 20 15 43 43 H 1.09001 * 109.48689 * 183.10439 * 22 21 20 44 44 H 1.08998 * 109.51234 * 63.05078 * 22 21 20 45 45 H 1.08997 * 109.49123 * 178.53564 * 24 23 22 46 46 H 1.09001 * 109.50904 * 58.48126 * 24 23 22 47 47 H 1.08995 * 109.52540 * 302.41415 * 25 20 15 48 48 H 1.09000 * 109.51846 * 62.53534 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0806 0.9745 2.3757 7 6 1.9933 -0.4017 3.7283 8 7 2.6766 -1.5188 3.8511 9 14 1.4997 0.5632 5.2496 10 1 0.0198 0.6699 5.3096 11 1 1.9957 -0.1362 6.4620 12 1 2.0918 1.9237 5.1865 13 6 2.0401 -0.7211 -1.2492 14 7 1.6514 0.0375 -2.4456 15 6 2.1248 -0.6270 -3.6672 16 1 3.1646 -0.9313 -3.5479 17 6 1.2443 -1.8566 -3.9762 18 6 1.1335 -1.8677 -5.5250 19 6 1.0344 -0.3599 -5.8683 20 6 1.9876 0.3194 -4.8684 21 6 1.4005 1.6565 -4.4187 22 6 1.3315 2.6048 -5.6195 23 8 2.6364 2.7513 -6.1834 24 6 3.2016 1.5346 -6.6760 25 6 3.3514 0.5401 -5.5207 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6054 -1.7198 1.2951 30 1 3.1264 -0.7994 1.2056 31 1 2.9245 -1.8413 4.7317 32 1 1.6054 -1.7198 -1.2951 33 1 3.1264 -0.7993 -1.2056 34 1 1.9881 0.9874 -2.3966 35 1 1.7247 -2.7686 -3.6219 36 1 0.2587 -1.7432 -3.5244 37 1 0.2365 -2.3969 -5.8467 38 1 2.0244 -2.3080 -5.9729 39 1 0.0144 -0.0024 -5.7266 40 1 1.3626 -0.1790 -6.8918 41 1 0.3981 1.4988 -4.0211 42 1 2.0352 2.0917 -3.6469 43 1 0.9650 3.5782 -5.2935 44 1 0.6554 2.1942 -6.3693 45 1 4.1805 1.7380 -7.1101 46 1 2.5468 1.1113 -7.4377 47 1 4.0473 0.9405 -4.7835 48 1 3.7305 -0.4080 -5.9020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602650752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:30 Heat of formation + Delta-G solvation = -73.963962 kcal Electronic energy + Delta-G solvation = -23354.478793 eV Core-core repulsion = 20214.863271 eV Total energy + Delta-G solvation = -3139.615522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70078 -37.71267 -35.98877 -33.31204 -32.25865 -31.73586 -31.21865 -27.61257 -26.62048 -26.08173 -24.72405 -23.71155 -22.63011 -22.29344 -19.98785 -19.12002 -18.26100 -16.53378 -16.26730 -16.17197 -15.89662 -15.28485 -15.02483 -14.52799 -14.42497 -14.17025 -13.77012 -13.70008 -13.16147 -12.82470 -12.44725 -12.19493 -11.91758 -11.66239 -11.53055 -11.45713 -11.34953 -11.33066 -11.06511 -10.82988 -10.81786 -10.79802 -10.64093 -10.49756 -10.27532 -10.20662 -10.10215 -9.66876 -9.54672 -9.10790 -8.92694 -8.30809 -8.05683 -5.95760 -3.96879 3.35605 3.39846 3.42434 3.73238 4.27049 4.36842 4.42662 4.49648 4.67553 4.88181 4.91942 5.04284 5.07242 5.16120 5.20616 5.35104 5.39899 5.45257 5.51809 5.55256 5.55767 5.68270 5.71534 5.80048 5.82009 5.84951 5.87562 5.99116 6.05397 6.13661 6.17348 6.21722 6.24995 6.36689 6.47566 6.59306 6.71842 7.04753 7.05434 7.20456 7.23411 7.45558 7.69249 7.73254 7.88119 8.04591 8.48686 9.09347 9.66360 11.15765 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026823 B = 0.003429 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.616814 B = 8164.218276 C = 8597.208157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.082 4.082 3 H 0.051 0.949 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.063 3.937 14 N -0.681 5.681 15 C 0.092 3.908 16 H 0.039 0.961 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.114 4.114 20 C -0.059 4.059 21 C -0.137 4.137 22 C 0.059 3.941 23 O -0.385 6.385 24 C 0.061 3.939 25 C -0.145 4.145 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.015 0.985 30 H 0.011 0.989 31 H 0.260 0.740 32 H 0.065 0.935 33 H 0.021 0.979 34 H 0.338 0.662 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.770 2.886 -22.916 23.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.101 4.101 3 H 0.070 0.930 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.066 4.066 14 N -0.314 5.314 15 C -0.018 4.018 16 H 0.057 0.943 17 C -0.152 4.152 18 C -0.161 4.161 19 C -0.151 4.151 20 C -0.059 4.059 21 C -0.175 4.175 22 C -0.018 4.018 23 O -0.304 6.304 24 C -0.015 4.015 25 C -0.182 4.182 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.159 0.841 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.067 0.933 45 H 0.108 0.892 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.213 2.671 -22.806 23.068 hybrid contribution 0.719 0.247 1.121 1.354 sum -1.494 2.918 -21.685 21.932 Atomic orbital electron populations 1.21570 0.95752 1.00473 1.00041 1.21184 0.95948 0.98816 0.94111 0.93006 1.19112 0.95842 0.95546 0.90476 1.21209 1.34611 1.08263 0.91022 0.92643 1.25019 0.95345 0.95097 0.99077 1.69963 1.39073 1.21254 1.23447 0.86692 0.78902 0.80107 0.82500 1.20261 1.21384 1.20322 1.22160 0.96927 0.97859 0.89621 1.60884 1.63731 1.05733 1.01091 1.22085 0.96419 0.93682 0.89608 0.94285 1.22498 1.01042 0.96777 0.94888 1.22526 1.01235 0.96055 0.96295 1.22482 0.99342 0.95371 0.97952 1.20993 0.94703 0.95223 0.95028 1.22138 1.03080 0.94392 0.97861 1.22678 0.84266 1.00250 0.94596 1.87911 1.32324 1.31126 1.79056 1.22613 0.98560 0.85413 0.94957 1.22244 0.97260 0.99862 0.98884 0.92888 0.93976 0.94258 0.96622 0.97030 0.93070 0.91630 0.96062 0.84067 0.92213 0.90235 0.91643 0.91945 0.91220 0.91927 0.89268 0.91083 0.89039 0.93337 0.89246 0.93131 0.91158 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 2 C -0.08 -1.68 2.48 -90.62 -0.22 -1.90 16 3 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.50 8.41 -34.44 -0.29 -14.79 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 C 0.06 1.09 4.90 -3.83 -0.02 1.07 16 14 N -0.68 -9.59 4.86 -105.68 -0.51 -10.11 16 15 C 0.09 1.12 2.86 -66.73 -0.19 0.93 16 16 H 0.04 0.51 7.55 -51.93 -0.39 0.12 16 17 C -0.11 -1.32 5.88 -24.81 -0.15 -1.46 16 18 C -0.12 -1.13 6.94 -24.49 -0.17 -1.30 16 19 C -0.11 -1.02 4.77 -25.20 -0.12 -1.14 16 20 C -0.06 -0.59 0.63 -153.95 -0.10 -0.69 16 21 C -0.14 -1.40 3.63 -26.75 -0.10 -1.50 16 22 C 0.06 0.56 6.64 37.24 0.25 0.81 16 23 O -0.39 -4.28 10.75 -35.23 -0.38 -4.66 16 24 C 0.06 0.55 6.62 37.25 0.25 0.79 16 25 C -0.14 -1.36 4.64 -26.75 -0.12 -1.49 16 26 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 27 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.07 1.17 7.67 -51.93 -0.40 0.77 16 33 H 0.02 0.38 8.11 -51.93 -0.42 -0.04 16 34 H 0.34 4.68 6.07 -39.29 -0.24 4.44 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.02 8.05 -51.92 -0.42 0.60 16 37 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.64 7.77 -51.93 -0.40 0.23 16 40 H 0.06 0.50 6.06 -51.93 -0.31 0.19 16 41 H 0.09 0.96 7.83 -51.93 -0.41 0.56 16 42 H 0.07 0.80 6.47 -51.93 -0.34 0.47 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.41 7.47 -51.93 -0.39 0.03 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.40 6.42 -51.93 -0.33 0.07 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -29.83 356.07 -9.66 -39.49 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.97 Total: 0.16 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -0.88 Total: -20.60 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.22 Total: -36.61 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.38 Total: -4.66 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.83 -9.66 -39.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602650752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.478 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds