Wall clock time and date at job start Tue Mar 31 2020 06:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47225 * 2 1 4 4 C 1.53001 * 109.47387 * 239.99860 * 2 1 3 5 5 C 1.50708 * 109.47013 * 65.00008 * 4 2 1 6 6 H 1.07993 * 119.99901 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99712 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00051 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99482 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47249 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47176 * 119.99932 * 9 7 5 12 12 H 1.48500 * 109.46691 * 239.99637 * 9 7 5 13 13 C 1.52997 * 109.47101 * 120.00035 * 2 1 3 14 14 N 1.46897 * 109.47213 * 294.99858 * 13 2 1 15 15 C 1.46901 * 111.00287 * 180.02562 * 14 13 2 16 16 H 1.08994 * 110.04177 * 326.45724 * 15 14 13 17 17 C 1.54354 * 110.05615 * 87.96858 * 15 14 13 18 18 C 1.55278 * 104.24772 * 142.81162 * 17 15 14 19 19 C 1.54967 * 102.61978 * 322.26721 * 18 17 15 20 20 C 1.53531 * 110.05711 * 205.00164 * 15 14 13 21 21 C 1.52782 * 110.09436 * 359.95507 * 20 15 14 22 22 C 1.53175 * 109.18182 * 177.47983 * 21 20 15 23 23 O 1.42903 * 109.36263 * 303.06851 * 22 21 20 24 24 C 1.42915 * 114.19472 * 61.49524 * 23 22 21 25 25 C 1.52782 * 110.07995 * 121.40033 * 20 15 14 26 26 H 1.08991 * 109.47687 * 300.00135 * 1 2 3 27 27 H 1.09003 * 109.47106 * 60.00829 * 1 2 3 28 28 H 1.09001 * 109.47225 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47346 * 184.99818 * 4 2 1 30 30 H 1.09000 * 109.47299 * 305.00445 * 4 2 1 31 31 H 0.96999 * 119.99322 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47305 * 175.00259 * 13 2 1 33 33 H 1.08994 * 109.47413 * 55.00242 * 13 2 1 34 34 H 1.00899 * 111.00248 * 303.95680 * 14 13 2 35 35 H 1.09001 * 110.48524 * 261.49343 * 17 15 14 36 36 H 1.09002 * 110.48702 * 23.99667 * 17 15 14 37 37 H 1.08999 * 110.89855 * 203.96635 * 18 17 15 38 38 H 1.09000 * 110.76098 * 80.50250 * 18 17 15 39 39 H 1.09002 * 110.50319 * 278.92257 * 19 18 17 40 40 H 1.09000 * 110.50166 * 156.37129 * 19 18 17 41 41 H 1.09001 * 109.52558 * 297.38810 * 21 20 15 42 42 H 1.09000 * 109.52308 * 57.57104 * 21 20 15 43 43 H 1.08998 * 109.49104 * 183.10335 * 22 21 20 44 44 H 1.09000 * 109.50473 * 63.04764 * 22 21 20 45 45 H 1.08997 * 109.48879 * 178.53534 * 24 23 22 46 46 H 1.08998 * 109.50786 * 58.47848 * 24 23 22 47 47 H 1.09008 * 109.51589 * 302.40982 * 25 20 15 48 48 H 1.08999 * 109.52174 * 62.53412 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3758 7 6 1.9924 -0.4023 -3.7284 8 7 2.6756 -1.5193 -3.8511 9 14 1.4989 0.5628 -5.2496 10 1 0.7424 1.7744 -4.8434 11 1 2.7172 0.9667 -5.9965 12 1 0.6442 -0.2857 -6.1184 13 6 2.0399 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1257 -0.6265 3.6671 16 1 2.1106 -1.7082 3.5343 17 6 3.5555 -0.1534 4.0056 18 6 3.5734 -0.0700 5.5560 19 6 2.1570 0.4671 5.8826 20 6 1.2427 -0.2299 4.8588 21 6 0.1469 0.7321 4.4029 22 6 -0.7584 1.0643 5.5930 23 8 -1.2937 -0.1456 6.1333 24 6 -0.3070 -1.0516 6.6312 25 6 0.6175 -1.4751 5.4857 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1264 -0.7995 -1.2056 30 1 1.6054 -1.7198 -1.2952 31 1 2.9229 -1.8422 -4.7318 32 1 3.1263 -0.7994 1.2056 33 1 1.6054 -1.7198 1.2951 34 1 1.9881 0.9873 2.3967 35 1 4.2902 -0.8780 3.6544 36 1 3.7472 0.8258 3.5670 37 1 4.3389 0.6261 5.8991 38 1 3.7228 -1.0567 5.9944 39 1 2.1197 1.5488 5.7536 40 1 1.8702 0.1946 6.8983 41 1 0.6006 1.6479 4.0239 42 1 -0.4440 0.2644 3.6154 43 1 -1.5742 1.7066 5.2614 44 1 -0.1784 1.5792 6.3589 45 1 -0.7980 -1.9317 7.0465 46 1 0.2784 -0.5610 7.4087 47 1 0.0413 -2.0121 4.7321 48 1 1.4046 -2.1226 5.8722 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602650754.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:33 Heat of formation + Delta-G solvation = -77.636430 kcal Electronic energy + Delta-G solvation = -23375.707688 eV Core-core repulsion = 20235.932915 eV Total energy + Delta-G solvation = -3139.774772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59044 -37.73062 -35.98554 -33.30990 -32.14334 -31.69528 -31.13226 -27.65407 -26.59747 -26.01278 -24.71927 -23.61264 -22.44019 -22.13780 -20.54013 -19.13951 -18.19590 -16.56055 -16.24725 -16.06273 -15.72901 -15.21740 -14.76322 -14.54273 -14.22968 -14.06079 -13.95142 -13.66294 -13.00013 -12.67741 -12.50656 -12.29953 -12.13086 -11.73573 -11.52802 -11.43758 -11.32811 -11.24745 -11.19071 -10.84828 -10.80751 -10.75794 -10.72014 -10.34700 -10.27511 -10.19636 -10.06160 -9.67986 -9.43817 -9.11193 -8.91173 -8.32013 -8.00419 -5.96627 -3.97526 3.32665 3.40281 3.44430 3.83035 4.29430 4.37369 4.48706 4.50406 4.73860 4.92496 5.03246 5.11819 5.15673 5.17022 5.25731 5.37854 5.38789 5.39566 5.49815 5.56760 5.60711 5.69442 5.72620 5.78467 5.82104 5.84932 5.92397 5.98459 6.09094 6.15381 6.17356 6.19851 6.32521 6.44283 6.56484 6.60957 6.71836 7.05080 7.15160 7.21223 7.23448 7.43876 7.68297 7.72626 7.87518 8.03998 8.48184 9.09238 9.65910 11.14981 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027473 B = 0.003459 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.951914 B = 8091.751042 C = 8599.335969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.676 5.676 15 C 0.093 3.907 16 H 0.078 0.922 17 C -0.153 4.153 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.052 4.052 21 C -0.122 4.122 22 C 0.056 3.944 23 O -0.385 6.385 24 C 0.062 3.938 25 C -0.141 4.141 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.011 0.989 30 H 0.015 0.985 31 H 0.258 0.742 32 H 0.022 0.978 33 H 0.064 0.936 34 H 0.337 0.663 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.043 0.957 45 H 0.088 0.912 46 H 0.048 0.952 47 H 0.074 0.926 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.469 2.873 22.677 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.070 0.930 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.305 5.305 15 C -0.018 4.018 16 H 0.096 0.904 17 C -0.192 4.192 18 C -0.159 4.159 19 C -0.159 4.159 20 C -0.052 4.052 21 C -0.159 4.159 22 C -0.021 4.021 23 O -0.304 6.304 24 C -0.015 4.015 25 C -0.179 4.179 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.155 0.845 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.066 0.934 47 H 0.093 0.907 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.234 2.436 22.555 22.796 hybrid contribution 1.242 0.605 -1.072 1.749 sum -0.992 3.041 21.483 21.719 Atomic orbital electron populations 1.21576 0.95732 1.00511 1.00077 1.21182 0.95955 0.98805 0.94095 0.92985 1.19124 0.95836 0.95573 0.90528 1.21283 1.34411 1.08255 0.90993 0.92534 1.25024 0.95369 0.95095 0.99104 1.69980 1.39228 1.21284 1.23226 0.86583 0.78232 0.80159 0.83321 1.19741 1.21137 1.21085 1.22163 0.97082 0.97603 0.89599 1.60719 1.63239 1.05464 1.01101 1.22180 0.90815 0.98729 0.90077 0.90381 1.23210 0.98434 1.01431 0.96160 1.22479 0.96826 1.00794 0.95773 1.22575 0.94779 0.99958 0.98550 1.20912 0.94982 0.95138 0.94209 1.21937 0.96690 0.99506 0.97807 1.22732 0.97912 0.86333 0.95108 1.87906 1.32974 1.29779 1.79704 1.22600 0.90775 0.93201 0.94942 1.22189 0.99183 0.97606 0.98907 0.93920 0.92903 0.94249 0.97027 0.96620 0.93188 0.95925 0.91756 0.84501 0.91809 0.91492 0.91887 0.91697 0.91548 0.91789 0.91165 0.89353 0.89299 0.93884 0.89370 0.93415 0.90722 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 2 C -0.08 -1.65 2.48 -90.62 -0.22 -1.87 16 3 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 6 H 0.06 1.56 7.05 -52.49 -0.37 1.19 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.06 1.08 4.91 -3.83 -0.02 1.06 16 14 N -0.68 -9.16 3.85 -105.69 -0.41 -9.57 16 15 C 0.09 1.08 2.87 -66.73 -0.19 0.89 16 16 H 0.08 0.99 7.34 -51.93 -0.38 0.61 16 17 C -0.15 -1.62 6.47 -24.81 -0.16 -1.78 16 18 C -0.12 -1.06 6.94 -24.49 -0.17 -1.23 16 19 C -0.12 -1.06 4.77 -25.20 -0.12 -1.18 16 20 C -0.05 -0.52 0.63 -153.96 -0.10 -0.62 16 21 C -0.12 -1.32 3.76 -26.75 -0.10 -1.42 16 22 C 0.06 0.57 6.64 37.25 0.25 0.81 16 23 O -0.38 -4.55 10.75 -35.23 -0.38 -4.93 16 24 C 0.06 0.58 6.62 37.25 0.25 0.83 16 25 C -0.14 -1.39 4.64 -26.75 -0.12 -1.51 16 26 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 27 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 34 H 0.34 4.43 7.73 -39.29 -0.30 4.12 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.73 7.56 -51.93 -0.39 0.34 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.58 7.77 -51.93 -0.40 0.18 16 40 H 0.06 0.52 6.06 -51.93 -0.31 0.20 16 41 H 0.07 0.75 7.57 -51.93 -0.39 0.35 16 42 H 0.09 1.17 7.70 -51.93 -0.40 0.77 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.39 7.47 -51.93 -0.39 0.00 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.40 6.42 -51.93 -0.33 0.06 16 47 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -29.64 358.15 -9.64 -39.28 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -9.07 Total: 0.13 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -0.89 Total: -20.68 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.33 Total: -35.98 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.38 Total: -4.93 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.64 -9.64 -39.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602650754.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.361 kcal (2) G-P(sol) polarization free energy of solvation -29.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds