Wall clock time and date at job start Tue Mar 31 2020 06:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.50701 * 109.47212 * 295.00231 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 14 14 N 1.46900 * 109.47557 * 64.99295 * 13 2 1 15 15 C 1.46903 * 111.00425 * 180.02562 * 14 13 2 16 16 H 1.08998 * 110.03833 * 35.00556 * 15 14 13 17 17 C 1.54359 * 110.05706 * 273.55163 * 15 14 13 18 18 C 1.54917 * 104.20511 * 217.20122 * 17 15 14 19 19 C 1.54965 * 102.79133 * 37.75333 * 18 17 15 20 20 C 1.53530 * 110.05700 * 156.51305 * 15 14 13 21 21 C 1.52781 * 110.10220 * 0.03274 * 20 15 14 22 22 C 1.53170 * 109.16848 * 182.50065 * 21 20 15 23 23 O 1.42912 * 109.36621 * 56.93219 * 22 21 20 24 24 C 1.42917 * 114.19574 * 298.50416 * 23 22 21 25 25 C 1.52786 * 110.07587 * 238.57748 * 20 15 14 26 26 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 28 28 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 29 29 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 30 30 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 31 31 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47698 * 184.99641 * 13 2 1 33 33 H 1.09009 * 109.47010 * 304.99646 * 13 2 1 34 34 H 1.00905 * 110.99516 * 56.04716 * 14 13 2 35 35 H 1.08998 * 110.48635 * 335.88124 * 17 15 14 36 36 H 1.08990 * 110.48635 * 98.52032 * 17 15 14 37 37 H 1.09003 * 110.74747 * 156.07560 * 18 17 15 38 38 H 1.08999 * 110.75076 * 279.24010 * 18 17 15 39 39 H 1.08997 * 110.50620 * 80.99032 * 19 18 17 40 40 H 1.09007 * 110.50275 * 203.54616 * 19 18 17 41 41 H 1.08996 * 109.52270 * 302.41641 * 21 20 15 42 42 H 1.09001 * 109.51713 * 62.59859 * 21 20 15 43 43 H 1.08998 * 109.49302 * 296.96052 * 22 21 20 44 44 H 1.09000 * 109.48924 * 176.89127 * 22 21 20 45 45 H 1.08998 * 109.49107 * 301.53848 * 24 23 22 46 46 H 1.08996 * 109.48752 * 181.46496 * 24 23 22 47 47 H 1.08998 * 109.52373 * 297.43655 * 25 20 15 48 48 H 1.09007 * 109.52391 * 57.61817 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9924 -0.4021 3.7283 8 7 2.6756 -1.5191 3.8512 9 14 1.4976 0.5623 5.2497 10 1 0.0175 0.6686 5.3087 11 1 1.9927 -0.1377 6.4622 12 1 2.0895 1.9228 5.1876 13 6 2.0401 -0.7211 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1248 -0.6271 -3.6673 16 1 2.0846 -1.7093 -3.5433 17 6 3.5687 -0.1839 -3.9854 18 6 3.6053 -0.0884 -5.5312 19 6 2.2062 0.4837 -5.8727 20 6 1.2647 -0.2010 -4.8655 21 6 0.1854 0.7816 -4.4142 22 6 -0.6977 1.1439 -5.6122 23 8 -1.2534 -0.0492 -6.1691 24 6 -0.2813 -0.9731 -6.6630 25 6 0.6195 -1.4267 -5.5102 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 3.1264 -0.7993 1.2056 30 1 1.6054 -1.7197 1.2951 31 1 2.9229 -1.8420 4.7318 32 1 3.1264 -0.7993 -1.2056 33 1 1.6055 -1.7198 -1.2951 34 1 1.9881 0.9873 -2.3966 35 1 3.7767 0.7881 -3.5382 36 1 4.2827 -0.9278 -3.6322 37 1 4.3912 0.5928 -5.8575 38 1 3.7416 -1.0742 -5.9759 39 1 2.1917 1.5648 -5.7348 40 1 1.9276 0.2264 -6.8947 41 1 -0.4251 0.3208 -3.6377 42 1 0.6551 1.6837 -4.0221 43 1 -0.0969 1.6518 -6.3665 44 1 -1.5029 1.8015 -5.2847 45 1 0.3244 -0.4889 -7.4290 46 1 -0.7869 -1.8383 -7.0917 47 1 1.3964 -2.0881 -5.8936 48 1 0.0223 -1.9568 -4.7682 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602650757.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:35 Heat of formation + Delta-G solvation = -77.680277 kcal Electronic energy + Delta-G solvation = -23373.364425 eV Core-core repulsion = 20233.587751 eV Total energy + Delta-G solvation = -3139.776674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.60104 -37.73806 -35.98610 -33.30759 -32.15844 -31.69677 -31.13514 -27.64771 -26.59518 -26.02630 -24.71705 -23.61468 -22.43876 -22.14193 -20.52345 -19.14175 -18.20070 -16.56540 -16.24565 -16.06427 -15.73144 -15.21940 -14.76438 -14.54719 -14.23186 -14.06704 -13.94799 -13.67189 -12.99424 -12.67359 -12.51352 -12.29502 -12.12812 -11.73906 -11.53321 -11.43327 -11.33174 -11.24604 -11.19299 -10.83018 -10.80633 -10.75487 -10.72829 -10.35291 -10.27538 -10.21311 -10.06659 -9.67496 -9.44224 -9.10909 -8.92884 -8.31175 -8.00361 -5.96120 -3.97208 3.35321 3.39619 3.42183 3.82707 4.29283 4.37423 4.48745 4.50414 4.73755 4.92301 5.02943 5.11549 5.15465 5.17227 5.25455 5.37863 5.38613 5.39806 5.49932 5.56486 5.60701 5.69537 5.72449 5.78701 5.82050 5.84948 5.92645 5.98310 6.08681 6.15264 6.17248 6.19966 6.32188 6.44276 6.55955 6.60862 6.71907 7.05149 7.14795 7.21288 7.23491 7.43939 7.68252 7.72532 7.87723 8.04246 8.48377 9.09063 9.66055 11.15416 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027573 B = 0.003455 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.255346 B = 8101.953815 C = 8611.739126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.052 0.948 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.064 3.936 14 N -0.676 5.676 15 C 0.093 3.907 16 H 0.078 0.922 17 C -0.154 4.154 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.052 4.052 21 C -0.122 4.122 22 C 0.056 3.944 23 O -0.385 6.385 24 C 0.061 3.939 25 C -0.141 4.141 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.011 0.989 30 H 0.015 0.985 31 H 0.260 0.740 32 H 0.023 0.977 33 H 0.064 0.936 34 H 0.337 0.663 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.043 0.957 44 H 0.089 0.911 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.068 0.932 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 2.897 -22.655 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.070 0.930 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.305 5.305 15 C -0.018 4.018 16 H 0.097 0.903 17 C -0.193 4.193 18 C -0.159 4.159 19 C -0.158 4.158 20 C -0.052 4.052 21 C -0.160 4.160 22 C -0.021 4.021 23 O -0.304 6.304 24 C -0.015 4.015 25 C -0.179 4.179 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.155 0.845 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.107 0.893 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.087 0.913 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.158 2.456 -22.531 22.767 hybrid contribution 1.233 0.619 1.067 1.744 sum -0.925 3.076 -21.465 21.703 Atomic orbital electron populations 1.21577 0.95733 1.00511 1.00067 1.21184 0.95951 0.98807 0.94102 0.92989 1.19110 0.95822 0.95553 0.90491 1.21207 1.34602 1.08280 0.91023 0.92648 1.25018 0.95349 0.95089 0.99076 1.69957 1.39087 1.21237 1.23449 0.86697 0.78928 0.80086 0.82511 1.20247 1.21385 1.20337 1.22160 0.97091 0.97604 0.89591 1.60713 1.63263 1.05460 1.01103 1.22184 0.90798 0.98746 0.90046 0.90349 1.23155 0.98431 1.01489 0.96219 1.22418 0.96927 1.00724 0.95816 1.22572 0.94740 0.99913 0.98613 1.20910 0.94934 0.95188 0.94216 1.21942 0.97017 0.99289 0.97756 1.22729 0.97737 0.86701 0.94900 1.87908 1.32999 1.30200 1.79259 1.22604 0.91140 0.92821 0.94963 1.22189 0.99245 0.97652 0.98785 0.94252 0.92903 0.93929 0.97040 0.96635 0.93068 0.95913 0.91760 0.84499 0.91506 0.91778 0.91941 0.91700 0.91543 0.91759 0.89337 0.91174 0.93872 0.89291 0.93412 0.89363 0.91303 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 2 C -0.08 -1.65 2.48 -90.62 -0.22 -1.87 16 3 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.44 8.41 -34.44 -0.29 -14.73 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 C 0.06 1.08 4.90 -3.83 -0.02 1.06 16 14 N -0.68 -9.17 3.87 -105.68 -0.41 -9.58 16 15 C 0.09 1.08 2.86 -66.72 -0.19 0.89 16 16 H 0.08 0.99 7.36 -51.93 -0.38 0.61 16 17 C -0.15 -1.63 6.41 -25.01 -0.16 -1.79 16 18 C -0.12 -1.07 6.91 -24.68 -0.17 -1.24 16 19 C -0.12 -1.06 4.77 -25.20 -0.12 -1.18 16 20 C -0.05 -0.52 0.63 -153.97 -0.10 -0.62 16 21 C -0.12 -1.32 3.77 -26.76 -0.10 -1.42 16 22 C 0.06 0.57 6.64 37.25 0.25 0.81 16 23 O -0.38 -4.54 10.75 -35.23 -0.38 -4.92 16 24 C 0.06 0.58 6.62 37.25 0.25 0.82 16 25 C -0.14 -1.38 4.65 -26.75 -0.12 -1.51 16 26 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 27 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 28 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 33 H 0.06 1.13 8.07 -51.92 -0.42 0.71 16 34 H 0.34 4.43 7.70 -39.29 -0.30 4.13 16 35 H 0.07 0.74 7.58 -51.93 -0.39 0.34 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.58 7.77 -51.93 -0.40 0.18 16 40 H 0.06 0.52 6.07 -51.92 -0.32 0.20 16 41 H 0.09 1.17 7.70 -51.93 -0.40 0.77 16 42 H 0.07 0.74 7.52 -51.93 -0.39 0.35 16 43 H 0.04 0.39 7.46 -51.93 -0.39 0.00 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.40 6.42 -51.93 -0.33 0.06 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 357.99 15.07 5.39 5.39 Total: -1.00 -29.60 357.99 -9.64 -39.24 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -9.07 Total: 0.20 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -0.89 Total: -20.71 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.33 Total: -36.01 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.38 Total: -4.92 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.60 -9.64 -39.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602650757.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.441 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds