Wall clock time and date at job start Tue Mar 31 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46882 * 2 1 4 4 C 1.52993 * 109.47557 * 239.99860 * 2 1 3 5 5 C 1.50696 * 109.47647 * 64.99709 * 4 2 1 6 6 H 1.07998 * 119.99560 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00556 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99597 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00218 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47398 * 90.00120 * 9 7 5 11 11 H 1.48509 * 109.46986 * 209.99928 * 9 7 5 12 12 H 1.48499 * 109.47202 * 329.99513 * 9 7 5 13 13 C 1.53005 * 109.46963 * 119.99509 * 2 1 3 14 14 N 1.46901 * 109.46788 * 295.00282 * 13 2 1 15 15 C 1.46904 * 110.99735 * 180.02562 * 14 13 2 16 16 H 1.09000 * 110.08616 * 47.08383 * 15 14 13 17 17 C 1.54358 * 110.05680 * 285.59610 * 15 14 13 18 18 C 1.54923 * 104.20494 * 217.17894 * 17 15 14 19 19 C 1.54967 * 102.79280 * 37.76714 * 18 17 15 20 20 C 1.53878 * 110.04904 * 168.52637 * 15 14 13 21 21 C 1.52790 * 110.11856 * 238.55728 * 20 15 14 22 22 C 1.53162 * 109.17003 * 177.63217 * 21 20 15 23 23 O 1.42912 * 109.37162 * 303.04263 * 22 21 20 24 24 C 1.42915 * 114.15780 * 61.51864 * 23 22 21 25 25 C 1.52776 * 110.18352 * 0.09586 * 20 15 14 26 26 H 1.09004 * 109.46739 * 60.00619 * 1 2 3 27 27 H 1.08998 * 109.46773 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47648 * 300.00670 * 1 2 3 29 29 H 1.08999 * 109.47403 * 185.00077 * 4 2 1 30 30 H 1.09003 * 109.46653 * 304.99749 * 4 2 1 31 31 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47082 * 175.00395 * 13 2 1 33 33 H 1.08995 * 109.47078 * 54.99829 * 13 2 1 34 34 H 1.00897 * 111.00543 * 303.95293 * 14 13 2 35 35 H 1.09003 * 110.48355 * 98.50467 * 17 15 14 36 36 H 1.08994 * 110.48830 * 335.86159 * 17 15 14 37 37 H 1.08997 * 110.74862 * 279.44227 * 18 17 15 38 38 H 1.08994 * 110.90286 * 156.16091 * 18 17 15 39 39 H 1.08997 * 110.50542 * 81.00341 * 19 18 17 40 40 H 1.09003 * 110.50204 * 203.55703 * 19 18 17 41 41 H 1.09003 * 109.51771 * 297.54004 * 21 20 15 42 42 H 1.09000 * 109.52424 * 57.72011 * 21 20 15 43 43 H 1.08998 * 109.49050 * 183.06790 * 22 21 20 44 44 H 1.09007 * 109.48509 * 63.00847 * 22 21 20 45 45 H 1.08997 * 109.48326 * 178.51271 * 24 23 22 46 46 H 1.09000 * 109.48450 * 58.45451 * 24 23 22 47 47 H 1.09006 * 109.52220 * 302.31670 * 25 20 15 48 48 H 1.08993 * 109.52193 * 62.50979 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.6415 0.0569 -2.4766 6 1 1.0807 0.9744 -2.3757 7 6 1.9926 -0.4024 -3.7283 8 7 2.6758 -1.5195 -3.8510 9 14 1.4990 0.5625 -5.2496 10 1 2.5650 1.5413 -5.5825 11 1 1.3113 -0.3715 -6.3889 12 1 0.2283 1.2846 -4.9871 13 6 2.0400 -0.7212 1.2494 14 7 1.6512 0.0376 2.4456 15 6 2.1256 -0.6262 3.6673 16 1 3.1709 -0.9141 3.5551 17 6 1.2623 -1.8713 3.9625 18 6 1.1408 -1.8921 5.5068 19 6 1.0142 -0.3889 5.8614 20 6 1.9645 0.3137 4.8749 21 6 3.3192 0.5515 5.5402 22 6 3.1436 1.5349 6.7013 23 8 2.5632 2.7461 6.2130 24 6 1.2653 2.5822 5.6376 25 6 1.3594 1.6442 4.4304 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8898 29 1 3.1264 -0.7994 -1.2054 30 1 1.6055 -1.7198 -1.2950 31 1 2.9232 -1.8424 -4.7315 32 1 3.1263 -0.7993 1.2058 33 1 1.6053 -1.7196 1.2953 34 1 1.9879 0.9875 2.3967 35 1 1.7599 -2.7735 3.6069 36 1 0.2787 -1.7710 3.5038 37 1 2.0349 -2.3214 5.9587 38 1 0.2512 -2.4388 5.8196 39 1 -0.0102 -0.0468 5.7141 40 1 1.3310 -0.2111 6.8891 41 1 3.7099 -0.3930 5.9187 42 1 4.0146 0.9685 4.8117 43 1 4.1154 1.7505 7.1454 44 1 2.4889 1.0955 7.4540 45 1 0.8852 3.5518 5.3160 46 1 0.5903 2.1544 6.3788 47 1 1.9931 2.0956 3.6669 48 1 0.3628 1.4732 4.0235 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602650759.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:38 Heat of formation + Delta-G solvation = -74.669375 kcal Electronic energy + Delta-G solvation = -23351.386499 eV Core-core repulsion = 20211.740388 eV Total energy + Delta-G solvation = -3139.646111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.68611 -37.71483 -35.98978 -33.31302 -32.27032 -31.73481 -31.21849 -27.60337 -26.62223 -26.08873 -24.71659 -23.70852 -22.62606 -22.30247 -19.97908 -19.11811 -18.26265 -16.52914 -16.26750 -16.17026 -15.90019 -15.28292 -15.02526 -14.52791 -14.42229 -14.17245 -13.77492 -13.69526 -13.16747 -12.82246 -12.44689 -12.20337 -11.92011 -11.66657 -11.52647 -11.45320 -11.35135 -11.33252 -11.06812 -10.85462 -10.81027 -10.78784 -10.63359 -10.49671 -10.27624 -10.19551 -10.10117 -9.67282 -9.54370 -9.10972 -8.91983 -8.31212 -8.05872 -5.96056 -3.97063 3.33968 3.40233 3.43710 3.73403 4.26968 4.36995 4.42830 4.49572 4.67738 4.88222 4.91914 5.04436 5.07346 5.16168 5.20695 5.35057 5.39748 5.45459 5.51850 5.55049 5.55924 5.68536 5.71718 5.80098 5.82011 5.85065 5.87857 5.99120 6.05463 6.13588 6.17573 6.22054 6.25155 6.36626 6.47591 6.59256 6.71758 7.04667 7.05389 7.20497 7.23460 7.45453 7.69205 7.73245 7.87992 8.04449 8.48634 9.09427 9.66256 11.15535 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026933 B = 0.003424 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.371373 B = 8175.176919 C = 8609.551381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.082 4.082 3 H 0.051 0.949 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.063 3.937 14 N -0.681 5.681 15 C 0.092 3.908 16 H 0.039 0.961 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.114 4.114 20 C -0.059 4.059 21 C -0.145 4.145 22 C 0.061 3.939 23 O -0.385 6.385 24 C 0.059 3.941 25 C -0.136 4.136 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.041 0.959 29 H 0.011 0.989 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.021 0.979 33 H 0.065 0.935 34 H 0.338 0.662 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.048 0.952 47 H 0.071 0.929 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 2.853 22.923 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.101 4.101 3 H 0.070 0.930 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.066 4.066 14 N -0.314 5.314 15 C -0.018 4.018 16 H 0.057 0.943 17 C -0.152 4.152 18 C -0.161 4.161 19 C -0.152 4.152 20 C -0.059 4.059 21 C -0.182 4.182 22 C -0.016 4.016 23 O -0.304 6.304 24 C -0.018 4.018 25 C -0.174 4.174 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.159 0.841 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.067 0.933 47 H 0.089 0.911 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.284 2.640 22.819 23.084 hybrid contribution 0.742 0.239 -1.128 1.371 sum -1.542 2.879 21.691 21.936 Atomic orbital electron populations 1.21571 0.95752 1.00470 1.00049 1.21186 0.95951 0.98814 0.94104 0.93006 1.19114 0.95846 0.95557 0.90495 1.21242 1.34542 1.08226 0.91007 0.92591 1.25022 0.95374 0.95084 0.99092 1.69971 1.39175 1.21238 1.23343 0.86632 0.78927 0.79810 0.82868 1.20773 1.21312 1.19877 1.22159 0.96931 0.97865 0.89616 1.60884 1.63673 1.05710 1.01095 1.22155 0.96400 0.93649 0.89594 0.94325 1.22430 1.01113 0.96682 0.94987 1.22460 1.01235 0.96099 0.96293 1.22484 0.99371 0.95281 0.98018 1.21046 0.94701 0.95198 0.94982 1.22240 0.97317 0.99890 0.98790 1.22613 0.98357 0.85604 0.94979 1.87917 1.32710 1.31025 1.78764 1.22683 0.84421 1.00249 0.94454 1.22127 1.03000 0.94469 0.97815 0.92889 0.94257 0.93970 0.97032 0.96614 0.93130 0.96065 0.91615 0.84118 0.92194 0.90232 0.91970 0.91670 0.91219 0.91929 0.90928 0.91151 0.89248 0.93135 0.89041 0.93341 0.91097 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 2 C -0.08 -1.67 2.48 -90.62 -0.22 -1.90 16 3 H 0.05 1.08 8.14 -51.92 -0.42 0.65 16 4 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.06 1.09 4.90 -3.82 -0.02 1.07 16 14 N -0.68 -9.57 4.85 -105.49 -0.51 -10.08 16 15 C 0.09 1.12 2.87 -66.54 -0.19 0.93 16 16 H 0.04 0.51 7.57 -51.93 -0.39 0.11 16 17 C -0.11 -1.32 5.82 -25.01 -0.15 -1.46 16 18 C -0.12 -1.13 6.91 -24.68 -0.17 -1.30 16 19 C -0.11 -1.02 4.77 -25.20 -0.12 -1.14 16 20 C -0.06 -0.59 0.64 -153.78 -0.10 -0.69 16 21 C -0.14 -1.36 4.65 -26.76 -0.12 -1.48 16 22 C 0.06 0.54 6.62 37.24 0.25 0.79 16 23 O -0.39 -4.28 10.76 -35.23 -0.38 -4.66 16 24 C 0.06 0.56 6.64 37.25 0.25 0.80 16 25 C -0.14 -1.40 3.65 -26.76 -0.10 -1.49 16 26 H 0.05 1.11 6.95 -51.93 -0.36 0.74 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.07 1.17 7.63 -51.93 -0.40 0.77 16 34 H 0.34 4.67 6.15 -39.29 -0.24 4.43 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.02 8.05 -51.93 -0.42 0.61 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.64 7.77 -51.93 -0.40 0.24 16 40 H 0.06 0.50 6.07 -51.93 -0.31 0.19 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.40 6.42 -51.93 -0.33 0.07 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.05 0.41 7.47 -51.93 -0.39 0.03 16 47 H 0.07 0.80 6.50 -51.93 -0.34 0.46 16 48 H 0.09 0.96 7.84 -51.93 -0.41 0.56 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -29.84 356.11 -9.66 -39.50 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.97 Total: 0.11 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -0.88 Total: -20.58 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.22 Total: -36.57 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.38 Total: -4.66 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.84 -9.66 -39.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602650759.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.173 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds