Wall clock time and date at job start Tue Mar 31 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47309 * 2 1 4 4 C 1.52994 * 109.47120 * 240.00042 * 2 1 3 5 5 C 1.50705 * 109.47161 * 65.00109 * 4 2 1 6 6 H 1.07994 * 119.99910 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00078 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99686 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00253 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46804 * 59.99816 * 9 7 5 11 11 H 1.48499 * 109.47257 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46940 * 300.00451 * 9 7 5 13 13 C 1.52994 * 109.47286 * 119.99722 * 2 1 3 14 14 N 1.46896 * 109.47261 * 181.98386 * 13 2 1 15 15 C 1.46844 * 111.00441 * 51.97608 * 14 13 2 16 16 C 1.53055 * 109.51611 * 185.89418 * 15 14 13 17 17 C 1.53014 * 109.26167 * 300.92872 * 16 15 14 18 18 C 1.53068 * 109.56143 * 177.65532 * 17 16 15 19 19 C 1.53114 * 109.15911 * 63.16617 * 18 17 16 20 20 O 1.42895 * 109.41676 * 57.45677 * 19 18 17 21 21 C 1.42899 * 114.12816 * 298.82068 * 20 19 18 22 22 C 1.53080 * 109.54043 * 297.45166 * 17 16 15 23 23 C 1.52996 * 109.35175 * 57.52544 * 17 16 15 24 24 C 1.46847 * 110.99963 * 176.21980 * 14 13 2 25 25 H 1.09001 * 109.46957 * 304.81832 * 1 2 3 26 26 H 1.09006 * 109.46890 * 64.80940 * 1 2 3 27 27 H 1.08992 * 109.47052 * 184.81141 * 1 2 3 28 28 H 1.09001 * 109.47364 * 185.00100 * 4 2 1 29 29 H 1.08997 * 109.47173 * 304.99884 * 4 2 1 30 30 H 0.97001 * 119.99718 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47499 * 301.98357 * 13 2 1 32 32 H 1.09005 * 109.47040 * 61.98509 * 13 2 1 33 33 H 1.08997 * 109.46328 * 305.91320 * 15 14 13 34 34 H 1.09002 * 109.46032 * 65.88032 * 15 14 13 35 35 H 1.08993 * 109.50885 * 180.98972 * 16 15 14 36 36 H 1.09003 * 109.53650 * 60.88300 * 16 15 14 37 37 H 1.09000 * 109.52119 * 183.07399 * 18 17 16 38 38 H 1.08996 * 109.51634 * 303.26134 * 18 17 16 39 39 H 1.08998 * 109.48210 * 297.47395 * 19 18 17 40 40 H 1.09000 * 109.47957 * 177.44257 * 19 18 17 41 41 H 1.08998 * 109.48422 * 301.22533 * 21 20 19 42 42 H 1.08998 * 109.49780 * 181.18360 * 21 20 19 43 43 H 1.09006 * 109.52117 * 56.74470 * 22 17 16 44 44 H 1.09000 * 109.52397 * 176.94170 * 22 17 16 45 45 H 1.09001 * 109.50807 * 182.55111 * 23 17 16 46 46 H 1.09003 * 109.50198 * 62.42910 * 23 17 16 47 47 H 1.09001 * 109.46073 * 294.13830 * 24 14 13 48 48 H 1.09000 * 109.46470 * 54.11572 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9933 -0.4016 -3.7283 8 7 2.6764 -1.5187 -3.8511 9 14 1.4985 0.5627 -5.2497 10 1 2.0896 1.9236 -5.1870 11 1 1.9936 -0.1373 -6.4622 12 1 0.0184 0.6682 -5.3092 13 6 2.0400 -0.7212 1.2492 14 7 3.5082 -0.6798 1.2734 15 6 3.9989 0.6941 1.1061 16 6 5.5249 0.6814 0.9890 17 6 6.1226 0.0538 2.2500 18 6 7.6458 -0.0158 2.1153 19 6 8.2068 1.4053 2.0142 20 8 7.8113 2.1550 3.1646 21 6 6.3969 2.2943 3.3132 22 6 5.7629 0.9092 3.4675 23 6 5.5586 -1.3569 2.4305 24 6 4.0315 -1.2848 2.5049 25 1 -0.3633 0.5868 0.8437 26 1 -0.3633 0.4374 -0.9300 27 1 -0.3633 -1.0240 0.0862 28 1 3.1263 -0.7995 -1.2056 29 1 1.6054 -1.7197 -1.2951 30 1 2.9237 -1.8416 -4.7317 31 1 1.6480 -0.2283 2.1389 32 1 1.7060 -1.7586 1.2316 33 1 3.5688 1.1258 0.2023 34 1 3.7057 1.2921 1.9690 35 1 5.8903 1.7027 0.8824 36 1 5.8187 0.0968 0.1172 37 1 8.0665 -0.5122 2.9897 38 1 7.9067 -0.5752 1.2169 39 1 7.8191 1.8861 1.1161 40 1 9.2948 1.3638 1.9637 41 1 5.9854 2.7863 2.4319 42 1 6.1812 2.8934 4.1979 43 1 4.6795 1.0098 3.5347 44 1 6.1423 0.4335 4.3719 45 1 5.9478 -1.7893 3.3523 46 1 5.8528 -1.9775 1.5841 47 1 3.7379 -0.6774 3.3611 48 1 3.6255 -2.2902 2.6166 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602652174.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:47 Heat of formation + Delta-G solvation = -67.058701 kcal Electronic energy + Delta-G solvation = -23936.253356 eV Core-core repulsion = 20796.937268 eV Total energy + Delta-G solvation = -3139.316088 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.61341 -38.07034 -35.75952 -33.52087 -31.96350 -31.21760 -30.68109 -28.85369 -26.92926 -25.39899 -23.79306 -23.56501 -23.24863 -22.17647 -20.70651 -18.74275 -18.00449 -16.51602 -16.29930 -16.07344 -15.51256 -14.81988 -14.71200 -14.48488 -14.33022 -14.30153 -13.97639 -13.43715 -13.11877 -12.56742 -12.40627 -12.11247 -11.99980 -11.90538 -11.84743 -11.45379 -11.32981 -11.29246 -10.99251 -10.83090 -10.81072 -10.57544 -10.53446 -10.33905 -10.22671 -10.17737 -9.87379 -9.52539 -9.32723 -9.05076 -8.83150 -8.24159 -7.71418 -5.89030 -3.89932 3.36834 3.41783 3.43716 3.81614 4.29064 4.52928 4.61945 4.63746 4.75593 4.95898 5.14850 5.19860 5.25781 5.37626 5.42851 5.46256 5.49211 5.51182 5.63744 5.64811 5.73529 5.78528 5.79551 5.84503 5.90138 5.92217 6.02462 6.06218 6.10676 6.21756 6.25213 6.27954 6.35516 6.38326 6.48268 6.58838 6.59585 6.98189 7.06336 7.12892 7.29527 7.59056 7.63015 7.85426 8.05752 8.20145 8.56058 9.17997 9.72301 11.21828 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019222 B = 0.004538 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.325897 B = 6169.227136 C = 6791.885756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 H 0.057 0.943 4 C 0.036 3.964 5 C -0.516 4.516 6 H 0.051 0.949 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.066 3.934 14 N -0.523 5.523 15 C 0.053 3.947 16 C -0.109 4.109 17 C -0.058 4.058 18 C -0.143 4.143 19 C 0.059 3.941 20 O -0.386 6.386 21 C 0.059 3.941 22 C -0.147 4.147 23 C -0.102 4.102 24 C 0.056 3.944 25 H 0.027 0.973 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.033 0.967 29 H 0.010 0.990 30 H 0.258 0.742 31 H 0.014 0.986 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.023 0.977 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.026 0.974 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.462 3.720 15.198 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 H 0.075 0.925 4 C -0.001 4.001 5 C -0.554 4.554 6 H 0.069 0.931 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.062 4.062 14 N -0.247 5.247 15 C -0.075 4.075 16 C -0.147 4.147 17 C -0.058 4.058 18 C -0.181 4.181 19 C -0.018 4.018 20 O -0.305 6.305 21 C -0.017 4.017 22 C -0.184 4.184 23 C -0.140 4.140 24 C -0.072 4.072 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.044 0.956 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.842 3.396 14.800 17.090 hybrid contribution -0.834 0.727 -0.443 1.192 sum 7.008 4.123 14.358 16.500 Atomic orbital electron populations 1.21714 0.96410 1.00412 1.00605 1.21363 0.94559 0.99168 0.95836 0.92469 1.19038 0.97378 0.94600 0.89062 1.21282 1.34488 1.08211 0.91437 0.93097 1.24976 0.95460 0.95045 0.98806 1.69969 1.39033 1.21123 1.23189 0.86795 0.78809 0.80191 0.82964 1.20440 1.21435 1.20446 1.22221 0.86078 1.00724 0.97151 1.61825 1.08987 1.18919 1.35014 1.22189 0.94789 0.89324 1.01179 1.21727 0.95242 1.00324 0.97392 1.20535 0.94310 0.95738 0.95228 1.22212 0.95434 0.97656 1.02796 1.22614 0.99648 0.91104 0.88441 1.87882 1.22405 1.73910 1.46341 1.22603 0.81270 0.96357 1.01505 1.22303 1.01366 0.96378 0.98355 1.21586 0.94851 0.95796 1.01764 1.22060 0.95075 0.99306 0.90768 0.95369 0.91578 0.93742 0.94874 0.97170 0.93211 0.96806 0.91375 0.88909 0.95934 0.91970 0.90426 0.91397 0.90603 0.92759 0.89251 0.92799 0.89398 0.90712 0.91483 0.92137 0.90746 0.95618 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.08 37.16 0.34 -2.17 16 2 C -0.09 -1.83 1.85 -90.63 -0.17 -2.00 16 3 H 0.06 1.16 6.07 -51.93 -0.32 0.85 16 4 C 0.04 0.92 4.30 -27.88 -0.12 0.80 16 5 C -0.52 -14.35 8.34 -34.44 -0.29 -14.63 16 6 H 0.05 1.38 7.08 -52.49 -0.37 1.01 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 9 Si 0.88 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.07 1.14 4.54 -3.83 -0.02 1.12 16 14 N -0.52 -8.70 4.00 -234.65 -0.94 -9.64 16 15 C 0.05 0.83 4.75 -3.83 -0.02 0.81 16 16 C -0.11 -1.52 4.32 -26.70 -0.12 -1.63 16 17 C -0.06 -0.68 0.51 -154.43 -0.08 -0.76 16 18 C -0.14 -1.54 4.92 -26.64 -0.13 -1.67 16 19 C 0.06 0.62 6.57 37.22 0.24 0.87 16 20 O -0.39 -4.71 10.76 -35.23 -0.38 -5.09 16 21 C 0.06 0.64 6.57 37.22 0.24 0.89 16 22 C -0.15 -1.61 4.33 -26.63 -0.12 -1.72 16 23 C -0.10 -1.26 4.89 -26.70 -0.13 -1.39 16 24 C 0.06 0.77 5.22 -3.82 -0.02 0.75 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 1.34 6.83 -51.93 -0.35 0.99 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.03 0.91 7.47 -51.93 -0.39 0.52 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.70 5.73 -51.93 -0.30 1.40 16 34 H 0.02 0.33 6.46 -51.93 -0.34 -0.01 16 35 H 0.06 0.80 5.04 -51.93 -0.26 0.54 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.59 6.67 -51.93 -0.35 0.24 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.85 4.97 -51.93 -0.26 0.59 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.03 0.33 6.60 -51.93 -0.34 -0.01 16 48 H 0.07 0.94 8.12 -51.93 -0.42 0.51 16 LS Contribution 346.30 15.07 5.22 5.22 Total: -1.00 -29.83 346.30 -9.52 -39.35 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -8.66 Total: -1.13 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -0.47 Total: -19.18 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.20 Total: -35.87 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.38 Total: -5.09 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.83 -9.52 -39.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602652174.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.711 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds