Wall clock time and date at job start Tue Mar 31 2020 06:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47153 * 2 1 4 4 C 1.42900 * 114.00039 * 179.97438 * 3 2 1 5 5 C 1.54009 * 113.57737 * 210.00094 * 4 3 2 6 6 C 1.52507 * 86.68784 * 220.83415 * 5 4 3 7 7 C 1.52524 * 88.40812 * 24.71821 * 6 5 4 8 8 C 1.53944 * 115.78655 * 266.70600 * 6 5 4 9 9 C 1.55131 * 101.49863 * 196.44318 * 8 6 5 10 10 N 1.47948 * 104.96397 * 35.80358 * 9 8 6 11 11 C 1.46908 * 111.00386 * 213.85036 * 10 9 8 12 12 C 1.52997 * 109.46699 * 290.82053 * 11 10 9 13 13 H 1.08998 * 109.47711 * 54.99907 * 12 11 10 14 14 C 1.53004 * 109.46903 * 294.99532 * 12 11 10 15 15 C 1.53004 * 109.47070 * 175.00094 * 12 11 10 16 16 C 1.50701 * 109.47211 * 185.00010 * 15 12 11 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 12 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 12 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47301 * 119.99669 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99516 * 20 18 16 24 24 C 1.47757 * 108.54653 * 336.10340 * 10 9 8 25 25 H 1.08998 * 109.47209 * 299.99895 * 1 2 3 26 26 H 1.08994 * 109.47128 * 59.99683 * 1 2 3 27 27 H 1.08996 * 109.47044 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47209 * 240.00105 * 2 1 3 29 29 H 1.09007 * 109.46909 * 120.00112 * 2 1 3 30 30 H 1.09004 * 112.81945 * 341.07835 * 4 3 2 31 31 H 1.09002 * 113.67815 * 106.39114 * 5 4 3 32 32 H 1.08998 * 113.76716 * 335.29371 * 5 4 3 33 33 H 1.08994 * 113.67978 * 89.73058 * 7 6 5 34 34 H 1.09003 * 113.67876 * 220.83794 * 7 6 5 35 35 H 1.09000 * 111.01971 * 314.49139 * 8 6 5 36 36 H 1.08993 * 111.02135 * 78.39105 * 8 6 5 37 37 H 1.09000 * 110.34069 * 276.93418 * 9 8 6 38 38 H 1.09000 * 110.34248 * 154.67449 * 9 8 6 39 39 H 1.08999 * 109.47398 * 170.81592 * 11 10 9 40 40 H 1.09000 * 109.46928 * 50.81693 * 11 10 9 41 41 H 1.08990 * 109.47425 * 60.00269 * 14 12 11 42 42 H 1.09000 * 109.46939 * 180.02562 * 14 12 11 43 43 H 1.08997 * 109.47262 * 300.00106 * 14 12 11 44 44 H 1.09000 * 109.47211 * 64.99037 * 15 12 11 45 45 H 1.09007 * 109.46376 * 304.99579 * 15 12 11 46 46 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.98182 * 121.23678 * 24 10 9 48 48 H 1.08999 * 109.98496 * 242.49346 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9482 2.7274 0.7064 6 6 4.9637 2.8366 -0.4261 7 6 4.0050 2.0404 -1.3055 8 6 6.3320 2.1817 -0.1640 9 6 7.2042 2.8353 -1.2680 10 7 6.6972 4.2202 -1.3854 11 6 6.7836 4.6967 -2.7724 12 6 8.2526 4.8859 -3.1559 13 1 8.7964 3.9577 -2.9806 14 6 8.8620 6.0024 -2.3056 15 6 8.3489 5.2617 -4.6360 16 6 9.7981 5.3278 -5.0442 17 1 10.5729 5.1228 -4.3203 18 6 10.1348 5.6561 -6.3402 19 7 9.1913 5.9061 -7.2217 20 14 11.9313 5.7458 -6.8442 21 1 12.7898 5.4240 -5.6761 22 1 12.1894 4.7692 -7.9328 23 1 12.2430 7.1160 -7.3245 24 6 5.3019 4.2526 -0.9004 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.9272 0.5461 0.3267 31 1 4.3978 2.5335 1.6803 32 1 3.2265 3.5441 0.7275 33 1 3.2985 2.6611 -1.8565 34 1 4.4998 1.2994 -1.9334 35 1 6.7032 2.4356 0.8289 36 1 6.2799 1.1010 -0.2957 37 1 7.0803 2.3051 -2.2122 38 1 8.2526 2.8396 -0.9696 39 1 6.2589 5.6478 -2.8632 40 1 6.3259 3.9643 -3.4373 41 1 8.7934 5.7349 -1.2513 42 1 9.9084 6.1375 -2.5792 43 1 8.3182 6.9307 -2.4810 44 1 7.8817 6.2335 -4.7953 45 1 7.8365 4.5094 -5.2358 46 1 9.4283 6.1374 -8.1333 47 1 5.2119 4.9545 -0.0714 48 1 4.6328 4.5447 -1.7098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602657503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:24 Heat of formation + Delta-G solvation = -43.190823 kcal Electronic energy + Delta-G solvation = -22518.879953 eV Core-core repulsion = 19380.598854 eV Total energy + Delta-G solvation = -3138.281099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67241 -38.12203 -36.35552 -34.29433 -32.16259 -31.21779 -29.80743 -27.83313 -26.63027 -26.02997 -24.97697 -23.15347 -22.75530 -22.15626 -20.72215 -19.02798 -18.29265 -17.12793 -16.36732 -16.02508 -15.66769 -15.27708 -14.94646 -14.37152 -14.21559 -14.08181 -13.52707 -13.20617 -12.96238 -12.84779 -12.61758 -12.47145 -12.33845 -12.09216 -11.84585 -11.54221 -11.44451 -11.33460 -11.30291 -11.03096 -10.81379 -10.70957 -10.68304 -10.48740 -10.36503 -10.24439 -10.11330 -9.63384 -9.59393 -9.07702 -8.89508 -8.30218 -7.93367 -5.94830 -3.95601 3.33671 3.41181 3.43865 3.45478 4.19369 4.28899 4.42023 4.48255 4.53105 4.56486 4.75961 4.81153 4.96560 4.99214 5.05289 5.31033 5.37835 5.40981 5.43334 5.55210 5.57674 5.59760 5.67662 5.71712 5.75553 5.77534 5.81738 5.90211 6.00191 6.04052 6.16105 6.20286 6.22179 6.25661 6.46003 6.60571 6.76493 7.04705 7.08334 7.17402 7.25703 7.37108 7.51278 7.73662 7.90013 8.06028 8.50536 9.11147 9.67622 11.16818 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031877 B = 0.002829 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.170399 B = 9895.141239 C =10274.222854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.376 6.376 4 C 0.065 3.935 5 C -0.118 4.118 6 C -0.100 4.100 7 C -0.141 4.141 8 C -0.108 4.108 9 C 0.046 3.954 10 N -0.525 5.525 11 C 0.057 3.943 12 C -0.079 4.079 13 H 0.054 0.946 14 C -0.122 4.122 15 C 0.026 3.974 16 C -0.509 4.509 17 H 0.056 0.944 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.059 3.941 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.028 0.972 41 H 0.042 0.958 42 H 0.052 0.948 43 H 0.038 0.962 44 H 0.015 0.985 45 H 0.011 0.989 46 H 0.258 0.742 47 H 0.076 0.924 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.945 -11.099 16.835 24.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.295 6.295 4 C 0.007 3.993 5 C -0.155 4.155 6 C -0.101 4.101 7 C -0.179 4.179 8 C -0.146 4.146 9 C -0.081 4.081 10 N -0.248 5.248 11 C -0.071 4.071 12 C -0.098 4.098 13 H 0.072 0.928 14 C -0.179 4.179 15 C -0.011 4.011 16 C -0.548 4.548 17 H 0.075 0.925 18 C -0.147 4.147 19 N -0.538 5.538 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.069 4.069 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.034 0.966 45 H 0.030 0.970 46 H 0.068 0.932 47 H 0.094 0.906 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.783 -10.545 16.943 24.254 hybrid contribution 0.616 -0.693 -1.074 1.418 sum -13.168 -11.238 15.870 23.485 Atomic orbital electron populations 1.21747 0.93880 1.02151 1.03132 1.22493 0.95559 0.84204 0.99881 1.87957 1.20904 1.26055 1.94605 1.23785 0.80666 0.97891 0.96981 1.23032 0.97333 0.97629 0.97554 1.21958 0.94274 0.96796 0.97093 1.23398 0.98002 0.99744 0.96768 1.22445 0.93153 0.99049 0.99909 1.23048 0.99452 0.88329 0.97299 1.63732 1.17540 1.21101 1.22476 1.22516 0.99367 0.99005 0.86190 1.21169 0.91888 0.98377 0.98332 0.92784 1.21574 1.00703 0.97673 0.97994 1.19140 0.96921 0.96512 0.88569 1.21276 0.92430 1.45995 0.95076 0.92534 1.25027 0.97093 0.95688 0.96844 1.69977 1.31933 1.48102 1.03738 0.86581 0.85642 0.77551 0.78507 1.19756 1.21148 1.21104 1.22589 0.89769 0.94748 0.99749 0.91911 0.91819 0.91236 0.93456 0.93558 0.89789 0.90810 0.88995 0.89089 0.91209 0.90397 0.91241 0.93506 0.90262 0.91510 0.95325 0.93912 0.92867 0.94291 0.96627 0.97046 0.93197 0.90623 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.45 6.50 37.16 0.24 0.69 16 3 O -0.38 -4.02 10.36 -35.23 -0.36 -4.38 16 4 C 0.06 0.62 4.18 -25.70 -0.11 0.52 16 5 C -0.12 -1.12 7.22 -26.46 -0.19 -1.31 16 6 C -0.10 -1.08 0.94 -154.48 -0.14 -1.23 16 7 C -0.14 -1.52 7.15 -26.44 -0.19 -1.71 16 8 C -0.11 -1.15 6.25 -25.11 -0.16 -1.31 16 9 C 0.05 0.64 5.73 -2.12 -0.01 0.63 16 10 N -0.52 -8.01 4.63 -231.52 -1.07 -9.08 16 11 C 0.06 1.02 3.96 -3.82 -0.02 1.01 16 12 C -0.08 -1.65 2.33 -90.62 -0.21 -1.87 16 13 H 0.05 1.15 7.34 -51.93 -0.38 0.77 16 14 C -0.12 -2.45 8.89 37.16 0.33 -2.11 16 15 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 16 C -0.51 -14.47 8.41 -34.44 -0.29 -14.76 16 17 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 20 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.06 0.77 6.35 -3.29 -0.02 0.75 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.71 7.87 -51.93 -0.41 0.30 16 31 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.06 8.01 -51.93 -0.42 0.64 16 34 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 37 H 0.05 0.69 7.62 -51.93 -0.40 0.29 16 38 H 0.08 1.12 8.13 -51.93 -0.42 0.69 16 39 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 40 H 0.03 0.53 7.85 -51.93 -0.41 0.12 16 41 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 42 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 47 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 48 H 0.05 0.73 7.29 -51.93 -0.38 0.35 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -30.47 373.24 -10.11 -40.57 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -9.41 Total: -3.73 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -0.61 Total: -19.34 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.34 Total: -35.67 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.36 Total: -4.38 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.47 -10.11 -40.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602657503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.617 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds