Wall clock time and date at job start Tue Mar 31 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46991 * 2 1 4 4 C 1.52998 * 109.47600 * 239.99918 * 2 1 3 5 5 C 1.50699 * 109.47303 * 64.99659 * 4 2 1 6 6 H 1.08000 * 119.99614 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00329 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99967 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00165 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46837 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47032 * 119.99867 * 9 7 5 12 12 H 1.48501 * 109.46690 * 239.99712 * 9 7 5 13 13 C 1.53003 * 109.47141 * 119.99747 * 2 1 3 14 14 N 1.46907 * 109.47232 * 297.82062 * 13 2 1 15 15 C 1.47477 * 110.99698 * 294.52524 * 14 13 2 16 16 C 1.53511 * 87.93045 * 221.29162 * 15 14 13 17 17 C 1.53002 * 114.16678 * 139.67028 * 16 15 14 18 18 C 1.52997 * 114.17580 * 272.18819 * 16 15 14 19 19 C 1.47472 * 111.00211 * 198.55284 * 14 13 2 20 20 H 1.09010 * 113.47640 * 23.93581 * 19 14 13 21 21 C 1.52998 * 113.48061 * 253.47312 * 19 14 13 22 22 H 1.08992 * 110.33404 * 186.57826 * 21 19 14 23 23 C 1.54476 * 110.37466 * 64.32024 * 21 19 14 24 24 C 1.54503 * 104.06621 * 217.19512 * 23 21 19 25 25 C 1.54484 * 104.06111 * 0.02562 * 24 23 21 26 26 O 1.44420 * 104.80239 * 23.98163 * 25 24 23 27 27 H 1.08993 * 109.47274 * 294.18348 * 1 2 3 28 28 H 1.08999 * 109.46854 * 54.19162 * 1 2 3 29 29 H 1.09004 * 109.46798 * 174.18594 * 1 2 3 30 30 H 1.08998 * 109.47098 * 185.00296 * 4 2 1 31 31 H 1.09003 * 109.47063 * 305.00170 * 4 2 1 32 32 H 0.96999 * 119.99955 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47326 * 57.81896 * 13 2 1 34 34 H 1.09000 * 109.47086 * 177.81816 * 13 2 1 35 35 H 1.08999 * 113.48113 * 336.06299 * 15 14 13 36 36 H 1.09002 * 113.47325 * 106.52913 * 15 14 13 37 37 H 1.09006 * 109.47189 * 79.50629 * 17 16 15 38 38 H 1.09005 * 109.47307 * 199.50804 * 17 16 15 39 39 H 1.09001 * 109.47591 * 319.50650 * 17 16 15 40 40 H 1.08999 * 109.47066 * 40.49442 * 18 16 15 41 41 H 1.08997 * 109.47402 * 160.49676 * 18 16 15 42 42 H 1.09003 * 109.47072 * 280.49928 * 18 16 15 43 43 H 1.08999 * 110.51094 * 335.84137 * 23 21 19 44 44 H 1.09004 * 110.50787 * 98.40843 * 23 21 19 45 45 H 1.08994 * 110.51414 * 118.64392 * 24 23 21 46 46 H 1.09001 * 110.51514 * 241.35897 * 24 23 21 47 47 H 1.09006 * 110.37081 * 142.81122 * 25 24 23 48 48 H 1.09001 * 110.37497 * 265.03695 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0807 0.9744 -2.3757 7 6 1.9925 -0.4023 -3.7282 8 7 2.6749 -1.5199 -3.8511 9 14 1.4989 0.5627 -5.2496 10 1 0.7423 1.7742 -4.8434 11 1 2.7172 0.9666 -5.9965 12 1 0.6443 -0.2860 -6.1184 13 6 2.0400 -0.7212 1.2493 14 7 1.5938 0.0011 2.4482 15 6 2.2143 1.3369 2.5219 16 6 2.4048 1.1042 4.0272 17 6 3.7452 1.6006 4.5731 18 6 1.2096 1.5285 4.8830 19 6 2.4002 -0.3769 3.6237 20 1 3.3880 -0.7603 3.3676 21 6 1.6537 -1.2755 4.6116 22 1 2.2507 -1.4279 5.5106 23 6 1.3148 -2.6319 3.9546 24 6 -0.0811 -2.9829 4.5163 25 6 -0.4208 -1.7966 5.4457 26 8 0.3727 -0.6979 4.9467 27 1 -0.3633 0.4210 0.9374 28 1 -0.3633 0.6013 -0.8334 29 1 -0.3633 -1.0224 -0.1041 30 1 3.1264 -0.7995 -1.2054 31 1 1.6055 -1.7198 -1.2951 32 1 2.9223 -1.8428 -4.7317 33 1 1.6451 -1.7370 1.2691 34 1 3.1293 -0.7552 1.2299 35 1 3.1524 1.4110 1.9717 36 1 1.5248 2.1492 2.2919 37 1 3.6994 2.6793 4.7232 38 1 3.9545 1.1100 5.5238 39 1 4.5367 1.3661 3.8614 40 1 0.2845 1.2452 4.3809 41 1 1.2630 1.0335 5.8526 42 1 1.2297 2.6090 5.0250 43 1 1.2759 -2.5318 2.8700 44 1 2.0455 -3.3883 4.2414 45 1 -0.8101 -3.0563 3.7094 46 1 -0.0420 -3.9133 5.0828 47 1 -1.4824 -1.5572 5.3828 48 1 -0.1454 -2.0294 6.4743 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602668693.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:20 Heat of formation + Delta-G solvation = -28.115911 kcal Electronic energy + Delta-G solvation = -23867.565548 eV Core-core repulsion = 20729.938147 eV Total energy + Delta-G solvation = -3137.627402 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99741 -38.51222 -35.52952 -32.86807 -32.04561 -31.30936 -29.92473 -27.32047 -27.10790 -26.29174 -25.10980 -23.75866 -22.19851 -21.34825 -20.82428 -18.77419 -18.28572 -16.66787 -16.33174 -15.96666 -15.56116 -14.74377 -14.61191 -14.38767 -14.02831 -13.87793 -13.67069 -13.09139 -12.91046 -12.55325 -12.28218 -12.19785 -12.02876 -11.88386 -11.77353 -11.52755 -11.40848 -11.35084 -11.05496 -10.85486 -10.76391 -10.68383 -10.52246 -10.35742 -10.19639 -10.08565 -9.77668 -9.60449 -9.51382 -9.09242 -8.88111 -8.40681 -8.31517 -5.96209 -3.97025 3.32947 3.40495 3.44989 3.92031 4.21855 4.41739 4.50019 4.62662 4.80347 4.94465 4.96103 5.16507 5.26756 5.33575 5.38181 5.39823 5.46856 5.54765 5.57492 5.67986 5.72623 5.77370 5.77649 5.82770 5.85426 6.00044 6.00380 6.03438 6.10516 6.21631 6.25821 6.27687 6.32812 6.45934 6.56959 6.63343 6.78283 6.83550 6.97500 7.10329 7.24139 7.26283 7.52161 7.71094 7.87117 8.04262 8.48870 9.09592 9.66457 11.15405 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.004190 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.120114 B = 6681.326576 C = 7261.799095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 H 0.054 0.946 4 C 0.028 3.972 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.023 3.977 14 N -0.443 5.443 15 C 0.008 3.992 16 C -0.085 4.085 17 C -0.137 4.137 18 C -0.106 4.106 19 C 0.031 3.969 20 H 0.083 0.917 21 C 0.097 3.903 22 H 0.064 0.936 23 C -0.153 4.153 24 C -0.150 4.150 25 C 0.036 3.964 26 O -0.339 6.339 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.011 0.989 31 H 0.015 0.985 32 H 0.258 0.742 33 H 0.071 0.929 34 H 0.032 0.968 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.040 0.960 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.371 0.811 20.970 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.105 4.105 14 N -0.164 5.164 15 C -0.121 4.121 16 C -0.085 4.085 17 C -0.194 4.194 18 C -0.163 4.163 19 C -0.079 4.079 20 H 0.101 0.899 21 C 0.039 3.961 22 H 0.081 0.919 23 C -0.191 4.191 24 C -0.188 4.188 25 C -0.041 4.041 26 O -0.257 6.257 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.103 0.897 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.102 0.817 20.776 20.898 hybrid contribution 0.866 -0.007 -1.202 1.481 sum -1.235 0.810 19.574 19.630 Atomic orbital electron populations 1.21567 0.95694 1.00698 0.99951 1.21171 0.96009 0.98849 0.93808 0.92789 1.19132 0.95789 0.95518 0.90557 1.21272 1.34377 1.08212 0.90973 0.92574 1.25016 0.95362 0.95089 0.99075 1.69980 1.39307 1.21267 1.23213 0.86587 0.78241 0.80175 0.83326 1.19740 1.21121 1.21088 1.22914 0.97271 0.98777 0.91488 1.68956 1.43136 1.02529 1.01817 1.23820 0.98843 0.94826 0.94605 1.22046 0.96308 0.94561 0.95605 1.21737 0.95868 1.01126 1.00711 1.21448 0.97318 0.98414 0.99135 1.23662 0.95670 0.95019 0.93525 0.89901 1.22660 0.86401 0.91602 0.95455 0.91857 1.23010 0.96521 0.96677 1.02873 1.22853 0.97616 0.98548 0.99749 1.23360 0.96996 0.87432 0.96282 1.89495 1.23878 1.28705 1.83663 0.93666 0.93132 0.94170 0.97073 0.96656 0.93199 0.91090 0.94933 0.91594 0.90005 0.92369 0.92677 0.92771 0.89917 0.92410 0.94087 0.89625 0.91424 0.90732 0.91401 0.89665 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.85 37.16 0.33 -2.14 16 2 C -0.08 -1.67 2.27 -90.62 -0.21 -1.87 16 3 H 0.05 1.16 7.30 -51.93 -0.38 0.78 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.49 8.48 -34.44 -0.29 -14.78 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 9 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.02 0.41 3.99 -3.82 -0.02 0.40 16 14 N -0.44 -6.73 4.89 -236.44 -1.16 -7.89 16 15 C 0.01 0.11 5.69 -7.56 -0.04 0.07 16 16 C -0.08 -1.01 1.43 -153.98 -0.22 -1.23 16 17 C -0.14 -1.38 9.24 37.16 0.34 -1.04 16 18 C -0.11 -1.26 7.38 37.16 0.27 -0.99 16 19 C 0.03 0.40 2.53 -71.45 -0.18 0.22 16 20 H 0.08 1.05 7.59 -51.92 -0.39 0.66 16 21 C 0.10 1.14 3.18 -25.96 -0.08 1.05 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 C -0.15 -1.77 6.59 -25.17 -0.17 -1.94 16 24 C -0.15 -1.55 7.09 -25.16 -0.18 -1.73 16 25 C 0.04 0.37 7.63 37.94 0.29 0.66 16 26 O -0.34 -4.23 6.64 -35.23 -0.23 -4.46 16 27 H 0.04 0.84 7.50 -51.93 -0.39 0.45 16 28 H 0.05 1.08 7.13 -51.93 -0.37 0.71 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.07 1.28 6.32 -51.93 -0.33 0.95 16 34 H 0.03 0.58 7.56 -51.93 -0.39 0.18 16 35 H 0.07 0.97 7.73 -51.93 -0.40 0.57 16 36 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.55 8.03 -51.93 -0.42 0.13 16 40 H 0.08 1.15 6.50 -51.93 -0.34 0.82 16 41 H 0.06 0.66 7.04 -51.93 -0.37 0.30 16 42 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.09 1.18 5.34 -51.93 -0.28 0.91 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 359.15 15.07 5.41 5.41 Total: -1.00 -29.94 359.15 -9.68 -39.62 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -9.05 Total: -1.88 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -0.37 Total: -21.23 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: -0.42 Total: -34.40 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.23 Total: -4.46 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.94 -9.68 -39.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602668693.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.505 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds