Wall clock time and date at job start Tue Mar 31 2020 06:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46452 * 2 1 4 4 C 1.53003 * 109.47034 * 239.99953 * 2 1 3 5 5 C 1.50703 * 109.47016 * 64.99759 * 4 2 1 6 6 H 1.07999 * 119.99625 * 0.02562 * 5 4 2 7 7 C 1.37871 * 119.99651 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00341 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99952 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47098 * 89.99782 * 9 7 5 11 11 H 1.48493 * 109.47115 * 209.99986 * 9 7 5 12 12 H 1.48500 * 109.46696 * 330.00157 * 9 7 5 13 13 C 1.52998 * 109.47168 * 120.00066 * 2 1 3 14 14 N 1.46906 * 109.47154 * 295.00197 * 13 2 1 15 15 C 1.47962 * 110.99751 * 269.36166 * 14 13 2 16 16 C 1.53928 * 86.17935 * 222.41494 * 15 14 13 17 17 C 1.53001 * 113.73514 * 269.36427 * 16 15 14 18 18 C 1.53002 * 113.83131 * 138.09266 * 16 15 14 19 19 C 1.47956 * 110.99966 * 170.00372 * 14 13 2 20 20 H 1.09000 * 113.86138 * 23.24911 * 19 14 13 21 21 C 1.53006 * 113.75742 * 251.89542 * 19 14 13 22 22 H 1.08996 * 109.86951 * 322.43663 * 21 19 14 23 23 C 1.54100 * 109.87448 * 83.43928 * 21 19 14 24 24 C 1.54816 * 104.18683 * 121.45568 * 23 21 19 25 25 C 1.55002 * 102.08885 * 20.88047 * 24 23 21 26 26 O 1.43732 * 109.87965 * 201.27149 * 21 19 14 27 27 H 1.09000 * 109.47224 * 60.00134 * 1 2 3 28 28 H 1.09003 * 109.46800 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47431 * 299.99583 * 1 2 3 30 30 H 1.09000 * 109.46763 * 185.00057 * 4 2 1 31 31 H 1.09004 * 109.47057 * 304.99711 * 4 2 1 32 32 H 0.97005 * 119.99935 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47185 * 175.00423 * 13 2 1 34 34 H 1.09003 * 109.47323 * 54.99780 * 13 2 1 35 35 H 1.08997 * 113.75888 * 108.09532 * 15 14 13 36 36 H 1.09000 * 113.85905 * 336.74987 * 15 14 13 37 37 H 1.09000 * 109.47330 * 156.73407 * 17 16 15 38 38 H 1.09004 * 109.46655 * 276.72671 * 17 16 15 39 39 H 1.08996 * 109.47130 * 36.72664 * 17 16 15 40 40 H 1.08999 * 109.46916 * 323.22478 * 18 16 15 41 41 H 1.08995 * 109.47164 * 83.22216 * 18 16 15 42 42 H 1.08999 * 109.47267 * 203.22710 * 18 16 15 43 43 H 1.09000 * 110.49188 * 240.12772 * 23 21 19 44 44 H 1.08997 * 110.48875 * 2.77839 * 23 21 19 45 45 H 1.08998 * 110.90747 * 139.07521 * 24 23 21 46 46 H 1.08997 * 110.90819 * 262.68376 * 24 23 21 47 47 H 1.08993 * 110.62175 * 81.47992 * 25 24 23 48 48 H 1.09007 * 110.61641 * 204.47857 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3756 7 6 1.9932 -0.4018 -3.7282 8 7 2.6772 -1.5183 -3.8510 9 14 1.4996 0.5633 -5.2496 10 1 2.5651 1.5430 -5.5817 11 1 1.3129 -0.3704 -6.3891 12 1 0.2283 1.2846 -4.9873 13 6 2.0401 -0.7213 1.2492 14 7 1.6514 0.0374 2.4457 15 6 2.6982 1.0149 2.8169 16 6 2.4497 0.5738 4.2705 17 6 1.3845 1.4020 4.9918 18 6 3.7291 0.4025 5.0919 19 6 1.9144 -0.7413 3.6759 20 1 2.6765 -1.5113 3.5559 21 6 0.6476 -1.2572 4.3616 22 1 -0.1435 -0.5110 4.2881 23 6 0.1914 -2.5714 3.6988 24 6 0.1910 -3.5998 4.8561 25 6 0.1090 -2.6842 6.1040 26 8 0.9228 -1.5478 5.7420 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 3.1264 -0.7995 -1.2056 31 1 1.6054 -1.7199 -1.2951 32 1 2.9251 -1.8408 -4.7317 33 1 3.1264 -0.7994 1.2056 34 1 1.6054 -1.7198 1.2952 35 1 2.4221 2.0506 2.6189 36 1 3.6906 0.7610 2.4444 37 1 0.9674 0.8207 5.8141 38 1 1.8365 2.3132 5.3838 39 1 0.5908 1.6623 4.2916 40 1 4.5146 -0.0105 4.4590 41 1 4.0455 1.3714 5.4780 42 1 3.5388 -0.2756 5.9238 43 1 -0.8112 -2.4623 3.2853 44 1 0.8948 -2.8713 2.9221 45 1 -0.6791 -4.2535 4.7953 46 1 1.1130 -4.1811 4.8601 47 1 -0.9204 -2.3763 6.2872 48 1 0.5211 -3.1886 6.9780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602668696.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:25 Heat of formation + Delta-G solvation = -38.797555 kcal Electronic energy + Delta-G solvation = -23563.723043 eV Core-core repulsion = 20425.632450 eV Total energy + Delta-G solvation = -3138.090592 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82160 -38.74694 -35.52080 -32.82380 -32.13679 -31.36501 -30.07232 -27.40185 -27.12212 -26.20450 -25.26961 -23.62873 -22.22773 -21.51926 -20.89699 -18.95701 -18.23955 -16.50059 -16.35361 -16.10210 -15.58989 -14.84174 -14.76009 -14.46081 -14.12470 -13.81192 -13.67333 -13.25672 -12.99247 -12.63612 -12.36647 -12.22588 -12.11602 -11.90196 -11.76558 -11.64181 -11.41886 -11.28998 -11.17053 -10.97272 -10.84850 -10.78927 -10.59758 -10.41763 -10.25864 -10.16702 -9.91712 -9.65568 -9.59678 -9.06262 -8.92699 -8.43488 -8.31099 -5.95973 -3.96833 3.33982 3.40212 3.43785 3.53799 4.32452 4.45059 4.50009 4.57018 4.65676 4.82820 4.88381 5.15246 5.17998 5.25835 5.35138 5.39240 5.40809 5.42106 5.56942 5.57809 5.68698 5.72394 5.75983 5.81990 5.89973 5.92343 5.94352 5.99446 6.07326 6.08545 6.19424 6.21846 6.27238 6.33502 6.49699 6.52574 6.67665 6.80680 6.90613 7.08516 7.23978 7.24499 7.44571 7.71669 7.87808 8.04523 8.49155 9.09597 9.66511 11.15591 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.003909 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.765766 B = 7160.469055 C = 7771.273697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.027 3.973 14 N -0.462 5.462 15 C 0.010 3.990 16 C -0.080 4.080 17 C -0.123 4.123 18 C -0.136 4.136 19 C 0.038 3.962 20 H 0.077 0.923 21 C 0.100 3.900 22 H 0.079 0.921 23 C -0.151 4.151 24 C -0.156 4.156 25 C 0.047 3.953 26 O -0.370 6.370 27 H 0.053 0.947 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.011 0.989 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.037 0.963 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.058 0.942 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.897 -0.435 20.952 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.101 4.101 14 N -0.185 5.185 15 C -0.119 4.119 16 C -0.080 4.080 17 C -0.180 4.180 18 C -0.193 4.193 19 C -0.071 4.071 20 H 0.095 0.905 21 C 0.042 3.958 22 H 0.097 0.903 23 C -0.189 4.189 24 C -0.193 4.193 25 C -0.030 4.030 26 O -0.289 6.289 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.029 0.971 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.076 0.924 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.349 -0.230 20.784 21.054 hybrid contribution 0.548 -0.177 -1.224 1.353 sum -2.800 -0.407 19.560 19.764 Atomic orbital electron populations 1.21574 0.95915 1.00235 1.00176 1.21075 0.95752 0.99008 0.93433 0.92740 1.19135 0.95817 0.95497 0.90615 1.21239 1.34473 1.08215 0.90979 0.92589 1.25015 0.95371 0.95080 0.99067 1.69968 1.39186 1.21296 1.23323 0.86641 0.78945 0.79826 0.82884 1.20764 1.21318 1.19877 1.22872 0.98110 0.97544 0.91575 1.68325 1.40516 1.09320 1.00356 1.24103 0.94797 0.98948 0.94055 1.22196 0.96070 0.95306 0.94449 1.21561 0.97766 0.98515 1.00163 1.21742 0.96011 1.01581 1.00016 1.23611 0.95550 0.95559 0.92422 0.90531 1.22438 0.96340 0.96149 0.80847 0.90349 1.23001 1.02849 0.94504 0.98509 1.23141 1.02792 0.98388 0.95025 1.23511 0.95407 0.86544 0.97560 1.88848 1.65087 1.48975 1.25947 0.92796 0.94459 0.93962 0.97064 0.96736 0.93145 0.94427 0.91678 0.89570 0.91347 0.91573 0.93090 0.91837 0.92982 0.92694 0.91992 0.90521 0.90392 0.90459 0.90720 0.92407 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.07 -1.54 2.53 -90.62 -0.23 -1.77 16 3 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.47 8.41 -34.44 -0.29 -14.76 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.03 0.47 4.19 -3.82 -0.02 0.46 16 14 N -0.46 -6.91 5.28 -230.05 -1.21 -8.13 16 15 C 0.01 0.13 7.04 -2.77 -0.02 0.11 16 16 C -0.08 -0.96 1.22 -153.58 -0.19 -1.15 16 17 C -0.12 -1.39 7.91 37.16 0.29 -1.10 16 18 C -0.14 -1.47 9.22 37.16 0.34 -1.13 16 19 C 0.04 0.50 2.20 -66.65 -0.15 0.36 16 20 H 0.08 1.06 7.87 -51.93 -0.41 0.65 16 21 C 0.10 1.22 2.55 -26.15 -0.07 1.16 16 22 H 0.08 1.02 7.33 -51.93 -0.38 0.63 16 23 C -0.15 -1.73 6.64 -25.20 -0.17 -1.90 16 24 C -0.16 -1.44 7.15 -24.72 -0.18 -1.62 16 25 C 0.05 0.43 7.72 38.21 0.29 0.72 16 26 O -0.37 -4.41 9.96 -35.23 -0.35 -4.76 16 27 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.04 0.67 7.38 -51.93 -0.38 0.29 16 34 H 0.06 1.14 7.01 -51.93 -0.36 0.78 16 35 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 36 H 0.07 0.95 7.30 -51.93 -0.38 0.57 16 37 H 0.07 0.76 6.57 -51.93 -0.34 0.42 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.77 7.86 -51.93 -0.41 0.36 16 40 H 0.05 0.56 7.94 -51.93 -0.41 0.15 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.98 6.62 -51.93 -0.34 0.64 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 LS Contribution 366.71 15.07 5.53 5.53 Total: -1.00 -29.85 366.71 -9.77 -39.62 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -9.18 Total: -2.05 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -0.26 Total: -20.61 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: -0.48 Total: -34.59 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.35 Total: -4.76 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.85 -9.77 -39.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602668696.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.819 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds