Wall clock time and date at job start Tue Mar 31 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47462 * 2 1 4 4 C 1.52999 * 109.46975 * 239.99884 * 2 1 3 5 5 C 1.50701 * 109.47212 * 65.00228 * 4 2 1 6 6 H 1.07999 * 119.99711 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99915 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00034 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00135 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47113 * 89.99740 * 9 7 5 11 11 H 1.48501 * 109.47269 * 210.00068 * 9 7 5 12 12 H 1.48506 * 109.47150 * 330.00099 * 9 7 5 13 13 C 1.53002 * 109.47278 * 119.99741 * 2 1 3 14 14 N 1.46891 * 109.47285 * 185.33959 * 13 2 1 15 15 C 1.47479 * 110.99809 * 79.30028 * 14 13 2 16 16 C 1.53516 * 87.93393 * 138.70345 * 15 14 13 17 17 C 1.53000 * 114.16870 * 220.32979 * 16 15 14 18 18 C 1.52999 * 114.34622 * 87.63462 * 16 15 14 19 19 C 1.47479 * 111.00178 * 175.26812 * 14 13 2 20 20 H 1.09006 * 113.47376 * 336.06457 * 19 14 13 21 21 C 1.53001 * 113.48007 * 106.52884 * 19 14 13 22 22 H 1.09005 * 110.32641 * 42.74997 * 21 19 14 23 23 C 1.54479 * 110.37416 * 280.50268 * 21 19 14 24 24 C 1.54505 * 104.06279 * 217.18704 * 23 21 19 25 25 C 1.54486 * 104.06045 * 359.97438 * 24 23 21 26 26 O 1.44420 * 110.37375 * 165.11651 * 21 19 14 27 27 H 1.09000 * 109.47610 * 174.80441 * 1 2 3 28 28 H 1.09008 * 109.47432 * 294.80962 * 1 2 3 29 29 H 1.09001 * 109.47231 * 54.80582 * 1 2 3 30 30 H 1.09000 * 109.47149 * 304.99928 * 4 2 1 31 31 H 1.09000 * 109.47319 * 185.00359 * 4 2 1 32 32 H 0.96995 * 119.99986 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47120 * 305.34432 * 13 2 1 34 34 H 1.08999 * 109.46657 * 65.33851 * 13 2 1 35 35 H 1.09004 * 113.47612 * 253.46934 * 15 14 13 36 36 H 1.09000 * 113.48215 * 23.93525 * 15 14 13 37 37 H 1.08998 * 109.47153 * 153.83880 * 17 16 15 38 38 H 1.08999 * 109.47343 * 273.83659 * 17 16 15 39 39 H 1.08999 * 109.47182 * 33.83606 * 17 16 15 40 40 H 1.08999 * 109.46699 * 326.08030 * 18 16 15 41 41 H 1.08996 * 109.46889 * 86.07288 * 18 16 15 42 42 H 1.08998 * 109.47162 * 206.07558 * 18 16 15 43 43 H 1.09006 * 110.50867 * 335.83027 * 23 21 19 44 44 H 1.09003 * 110.51104 * 98.54039 * 23 21 19 45 45 H 1.08999 * 110.51638 * 118.64239 * 24 23 21 46 46 H 1.08997 * 110.50972 * 241.21958 * 24 23 21 47 47 H 1.08998 * 110.36938 * 142.81112 * 25 24 23 48 48 H 1.09003 * 110.37185 * 265.03336 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0807 0.9746 -2.3756 7 6 1.9923 -0.4023 -3.7283 8 7 1.6440 0.2766 -4.7995 9 14 2.9626 -1.9890 -3.9028 10 1 2.0233 -3.1334 -4.0188 11 1 3.8107 -1.9193 -5.1198 12 1 3.8251 -2.1757 -2.7084 13 6 2.0400 -0.7212 1.2493 14 7 3.5032 -0.6106 1.3154 15 6 3.9106 0.7094 1.8318 16 6 4.9878 -0.0078 2.6575 17 6 5.1654 0.5469 4.0723 18 6 6.3120 -0.2178 1.9203 19 6 4.0217 -1.1972 2.5653 20 1 3.2870 -1.2232 3.3702 21 6 4.7259 -2.5402 2.3622 22 1 5.3652 -2.5029 1.4802 23 6 3.6881 -3.6765 2.2266 24 6 4.3399 -4.8697 2.9604 25 6 5.6946 -4.3134 3.4521 26 8 5.4992 -2.8844 3.5323 27 1 -0.3634 -1.0234 -0.0931 28 1 -0.3634 0.4312 0.9329 29 1 -0.3634 0.5923 -0.8398 30 1 1.6053 -1.7198 -1.2951 31 1 3.1262 -0.7996 -1.2056 32 1 1.8912 -0.0464 -5.6800 33 1 1.6006 -0.2656 2.1367 34 1 1.7568 -1.7727 1.2027 35 1 4.3183 1.3686 1.0652 36 1 3.1464 1.1923 2.4408 37 1 5.5575 -0.2350 4.7226 38 1 5.8630 1.3841 4.0495 39 1 4.2022 0.8868 4.4528 40 1 6.1154 -0.3891 0.8620 41 1 6.9361 0.6684 2.0351 42 1 6.8277 -1.0821 2.3387 43 1 2.7510 -3.3974 2.7085 44 1 3.5217 -3.9184 1.1768 45 1 3.7251 -5.1807 3.8051 46 1 4.4935 -5.7024 2.2741 47 1 5.9371 -4.7185 4.4345 48 1 6.4839 -4.5513 2.7389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602668697.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:28 Heat of formation + Delta-G solvation = -32.093389 kcal Electronic energy + Delta-G solvation = -23911.067408 eV Core-core repulsion = 20773.267530 eV Total energy + Delta-G solvation = -3137.799878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.96421 -38.78707 -35.67532 -32.72563 -32.10079 -31.52651 -30.01514 -27.74871 -27.36074 -26.54786 -25.22007 -23.06677 -22.08857 -21.71803 -20.91092 -18.88856 -18.30716 -16.71864 -16.39194 -16.09025 -15.75045 -14.99025 -14.81381 -14.33036 -14.06974 -13.75882 -13.52266 -13.36816 -13.01013 -12.74477 -12.36569 -12.26011 -12.15167 -11.88142 -11.80257 -11.74105 -11.57469 -11.38864 -11.33106 -11.03168 -10.98412 -10.84578 -10.67721 -10.43816 -10.16280 -9.83660 -9.77184 -9.65031 -9.63106 -9.38252 -8.93222 -8.52421 -8.40703 -5.94234 -3.89673 3.37411 3.44836 3.52424 3.58986 4.32744 4.48356 4.55389 4.56778 4.66799 4.84373 4.89702 5.16200 5.18985 5.26834 5.30369 5.37407 5.40402 5.41562 5.53129 5.60778 5.62919 5.68976 5.75730 5.76451 5.84510 5.93827 5.94780 5.97924 6.00617 6.06978 6.10010 6.14070 6.21066 6.25153 6.32744 6.38061 6.53533 6.63696 6.83123 6.89212 6.99934 7.11716 7.40853 7.50245 7.68475 7.93907 8.65971 9.11788 9.70097 11.19540 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015895 B = 0.005398 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.156725 B = 5185.753750 C = 5776.454470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 H 0.061 0.939 4 C -0.001 4.001 5 C -0.511 4.511 6 H 0.070 0.930 7 C 0.064 3.936 8 N -0.909 5.909 9 Si 0.875 3.125 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.261 1.261 13 C 0.026 3.974 14 N -0.447 5.447 15 C 0.007 3.993 16 C -0.081 4.081 17 C -0.132 4.132 18 C -0.123 4.123 19 C 0.039 3.961 20 H 0.076 0.924 21 C 0.095 3.905 22 H 0.081 0.919 23 C -0.150 4.150 24 C -0.155 4.155 25 C 0.046 3.954 26 O -0.369 6.369 27 H 0.045 0.955 28 H 0.030 0.970 29 H 0.066 0.934 30 H 0.003 0.997 31 H 0.030 0.970 32 H 0.260 0.740 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.286 -6.186 19.283 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.038 4.038 5 C -0.549 4.549 6 H 0.088 0.912 7 C -0.136 4.136 8 N -0.549 5.549 9 Si 0.703 3.297 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.186 1.186 13 C -0.102 4.102 14 N -0.170 5.170 15 C -0.122 4.122 16 C -0.081 4.081 17 C -0.190 4.190 18 C -0.180 4.180 19 C -0.071 4.071 20 H 0.094 0.906 21 C 0.037 3.963 22 H 0.099 0.901 23 C -0.188 4.188 24 C -0.193 4.193 25 C -0.032 4.032 26 O -0.288 6.288 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.022 0.978 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.571 -6.298 18.590 21.037 hybrid contribution -0.235 -0.819 0.259 0.891 sum 7.335 -7.116 18.849 21.442 Atomic orbital electron populations 1.21707 0.95997 1.01286 1.00111 1.20943 0.94582 0.99282 0.94144 0.92074 1.19534 0.97045 0.94826 0.92440 1.21219 1.34852 1.09387 0.89426 0.91229 1.25001 0.95699 0.96897 0.95958 1.69922 1.47611 1.39441 0.97944 0.86830 0.80779 0.84361 0.77708 1.20686 1.21712 1.18563 1.22860 0.87903 1.01213 0.98245 1.68781 1.12543 1.06794 1.28853 1.23941 0.96807 0.93565 0.97845 1.21948 0.95126 0.95488 0.95584 1.21684 1.01336 1.00693 0.95293 1.21519 0.94375 1.01380 1.00694 1.23476 0.96861 0.93191 0.93530 0.90594 1.22783 0.91618 0.93287 0.88638 0.90118 1.22977 0.99371 0.94692 1.01751 1.22938 0.97085 0.98688 1.00608 1.23353 0.96506 0.81914 1.01383 1.89090 1.73786 1.21615 1.44260 0.93614 0.95117 0.91495 0.97829 0.95133 0.93005 0.95224 0.91285 0.89366 0.91635 0.91931 0.92545 0.93052 0.91365 0.92812 0.91968 0.91054 0.90127 0.91008 0.90730 0.89465 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.92 37.15 0.33 -2.15 16 2 C -0.07 -1.40 2.43 -90.62 -0.22 -1.62 16 3 H 0.06 1.27 7.76 -51.93 -0.40 0.86 16 4 C 0.00 -0.03 3.46 -27.88 -0.10 -0.12 16 5 C -0.51 -14.63 9.03 -34.44 -0.31 -14.94 16 6 H 0.07 2.14 7.31 -52.49 -0.38 1.75 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.54 13.96 55.43 0.77 -27.77 16 9 Si 0.88 22.34 27.47 -169.99 -4.67 17.68 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 13 C 0.03 0.43 4.14 -3.83 -0.02 0.41 16 14 N -0.45 -7.08 5.37 -236.44 -1.27 -8.35 16 15 C 0.01 0.10 6.31 -7.55 -0.05 0.05 16 16 C -0.08 -1.02 1.37 -153.98 -0.21 -1.23 16 17 C -0.13 -1.42 9.29 37.16 0.35 -1.08 16 18 C -0.12 -1.54 7.99 37.16 0.30 -1.24 16 19 C 0.04 0.53 2.15 -71.45 -0.15 0.37 16 20 H 0.08 1.01 7.78 -51.93 -0.40 0.61 16 21 C 0.09 1.24 2.32 -25.95 -0.06 1.18 16 22 H 0.08 1.16 7.15 -51.93 -0.37 0.79 16 23 C -0.15 -1.83 6.63 -25.16 -0.17 -2.00 16 24 C -0.16 -1.52 7.09 -25.16 -0.18 -1.70 16 25 C 0.05 0.45 7.63 37.94 0.29 0.74 16 26 O -0.37 -4.66 10.79 -35.23 -0.38 -5.04 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.07 1.38 7.11 -51.93 -0.37 1.01 16 30 H 0.00 0.08 7.57 -51.93 -0.39 -0.31 16 31 H 0.03 0.76 6.69 -51.93 -0.35 0.42 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.03 0.44 7.56 -51.93 -0.39 0.05 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.32 8.12 -51.93 -0.42 0.90 16 36 H 0.07 0.87 7.41 -51.93 -0.38 0.48 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 39 H 0.05 0.52 7.90 -51.93 -0.41 0.11 16 40 H 0.07 0.97 7.90 -51.93 -0.41 0.56 16 41 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16 42 H 0.06 0.77 6.92 -51.93 -0.36 0.41 16 43 H 0.07 0.86 7.84 -51.93 -0.41 0.46 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -30.91 365.40 -9.61 -40.52 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -9.27 Total: -1.04 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -0.30 Total: -21.49 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.50 Total: -36.12 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.38 Total: -5.04 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.68 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.91 -9.61 -40.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602668697.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.422 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds