Wall clock time and date at job start Tue Mar 31 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.50701 * 109.47212 * 295.00231 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 14 14 N 1.46900 * 109.47557 * 64.99295 * 13 2 1 15 15 C 1.44803 * 110.99754 * 66.04607 * 14 13 2 16 16 C 1.54437 * 109.06335 * 219.85924 * 15 14 13 17 17 O 1.36476 * 111.41707 * 284.08476 * 16 15 14 18 18 C 1.43654 * 117.39127 * 61.36034 * 17 16 15 19 19 C 1.51039 * 107.92433 * 279.22357 * 18 17 16 20 20 H 1.09002 * 109.02441 * 331.36880 * 19 18 17 21 21 C 1.52994 * 109.02849 * 212.45728 * 19 18 17 22 22 C 1.53779 * 113.61535 * 159.13594 * 21 19 18 23 23 C 1.53953 * 87.01976 * 220.04248 * 22 21 19 24 24 C 1.53778 * 113.61811 * 61.52401 * 21 19 18 25 25 C 1.48059 * 111.00425 * 194.15692 * 14 13 2 26 26 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 27 27 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 28 28 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 30 30 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 31 31 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47698 * 184.99641 * 13 2 1 33 33 H 1.09009 * 109.47010 * 304.99646 * 13 2 1 34 34 H 1.09003 * 109.54149 * 339.73963 * 15 14 13 35 35 H 1.09001 * 109.53821 * 99.89958 * 15 14 13 36 36 H 1.09004 * 109.08671 * 44.58385 * 16 15 14 37 37 H 1.08999 * 109.08802 * 163.65127 * 16 15 14 38 38 H 1.09003 * 109.77428 * 38.82640 * 18 17 16 39 39 H 1.08997 * 109.77449 * 159.56449 * 18 17 16 40 40 H 1.08999 * 112.84690 * 290.32878 * 21 19 18 41 41 H 1.08995 * 113.61658 * 334.56580 * 22 21 19 42 42 H 1.09000 * 113.61505 * 105.47001 * 22 21 19 43 43 H 1.09001 * 113.54257 * 270.80760 * 23 22 21 44 44 H 1.09010 * 113.74216 * 139.93973 * 23 22 21 45 45 H 1.08994 * 113.61862 * 254.53207 * 24 21 19 46 46 H 1.09002 * 113.61435 * 25.43516 * 24 21 19 47 47 H 1.08999 * 108.94388 * 312.48564 * 25 14 13 48 48 H 1.08997 * 108.94289 * 71.10122 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9924 -0.4021 3.7283 8 7 2.6756 -1.5191 3.8512 9 14 1.4976 0.5623 5.2497 10 1 0.0175 0.6686 5.3087 11 1 1.9927 -0.1377 6.4622 12 1 2.0895 1.9228 5.1876 13 6 2.0401 -0.7211 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.3242 1.3189 -2.4888 16 6 1.3344 2.3916 -2.9935 17 8 1.1445 2.2995 -4.3418 18 6 0.5884 1.0759 -4.8489 19 6 1.7048 0.0633 -4.9465 20 1 2.6459 0.5870 -5.1141 21 6 1.4334 -0.8658 -6.1313 22 6 2.6889 -1.5880 -6.6481 23 6 2.1479 -1.3419 -8.0682 24 6 1.3867 -0.1393 -7.4858 25 6 1.8214 -0.7782 -3.6696 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 3.1264 -0.7993 1.2056 30 1 1.6054 -1.7197 1.2951 31 1 2.9229 -1.8420 4.7318 32 1 3.1264 -0.7993 -1.2056 33 1 1.6055 -1.7198 -1.2951 34 1 2.6699 1.5831 -1.4894 35 1 3.1766 1.2604 -3.1656 36 1 0.3773 2.2591 -2.4888 37 1 1.7284 3.3798 -2.7565 38 1 -0.1817 0.7112 -4.1692 39 1 0.1580 1.2474 -5.8355 40 1 0.5859 -1.5302 -5.9627 41 1 3.6167 -1.0566 -6.4361 42 1 2.7311 -2.6417 -6.3725 43 1 1.4965 -2.1375 -8.4299 44 1 2.9172 -1.0643 -8.7890 45 1 0.3791 -0.0251 -7.8856 46 1 1.9578 0.7890 -7.5033 47 1 2.8031 -1.2512 -3.6460 48 1 1.0567 -1.5547 -3.6864 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602674517.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:49 Heat of formation + Delta-G solvation = -41.081273 kcal Electronic energy + Delta-G solvation = -23283.526656 eV Core-core repulsion = 20145.337034 eV Total energy + Delta-G solvation = -3138.189622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.30497 -38.55153 -36.96902 -34.40687 -32.77341 -31.77042 -28.71847 -27.05428 -26.67600 -25.64804 -25.32217 -24.01353 -22.64203 -21.47948 -19.99565 -19.59225 -18.83550 -16.72143 -16.35637 -16.08752 -15.92738 -15.60094 -15.10592 -14.61354 -14.17183 -14.06100 -13.80896 -13.41094 -12.87369 -12.71014 -12.65921 -12.58198 -12.27184 -11.74991 -11.66303 -11.45195 -11.41823 -11.18488 -10.89580 -10.84476 -10.75995 -10.71662 -10.52459 -10.38982 -10.29406 -10.25671 -10.10908 -9.60263 -9.33794 -9.10833 -8.94127 -8.31973 -7.89017 -5.97059 -3.98203 3.34693 3.39060 3.41543 3.90391 4.01803 4.36302 4.43500 4.48616 4.53803 4.63215 4.90986 5.07345 5.23017 5.29945 5.35674 5.38634 5.40478 5.52415 5.54823 5.57263 5.58362 5.64494 5.67553 5.72151 5.75837 5.82612 5.92313 5.95114 6.01129 6.08648 6.12383 6.17588 6.23439 6.34882 6.41010 6.56730 6.70715 7.01062 7.17849 7.21493 7.41344 7.50320 7.69984 7.70920 7.86018 8.03142 8.47223 9.08018 9.65127 11.14482 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032833 B = 0.003364 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.598599 B = 8322.608828 C = 8837.423651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 H 0.056 0.944 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.067 3.933 14 N -0.551 5.551 15 C 0.017 3.983 16 C 0.079 3.921 17 O -0.388 6.388 18 C 0.079 3.921 19 C -0.109 4.109 20 H 0.077 0.923 21 C -0.102 4.102 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.136 4.136 25 C 0.068 3.932 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.011 0.989 30 H 0.015 0.985 31 H 0.260 0.740 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.031 0.969 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.143 2.330 -22.161 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.060 4.060 14 N -0.276 5.276 15 C -0.112 4.112 16 C 0.000 4.000 17 O -0.306 6.306 18 C 0.003 3.997 19 C -0.128 4.128 20 H 0.095 0.905 21 C -0.121 4.121 22 C -0.174 4.174 23 C -0.181 4.181 24 C -0.174 4.174 25 C -0.059 4.059 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.101 0.899 47 H 0.049 0.951 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.480 2.442 -22.110 22.382 hybrid contribution 0.701 -0.130 1.183 1.382 sum -1.779 2.311 -20.927 21.129 Atomic orbital electron populations 1.21566 0.95790 1.00417 1.00035 1.21263 0.95962 0.99016 0.93741 0.92551 1.19114 0.95842 0.95551 0.90460 1.21195 1.34630 1.08284 0.90977 0.92630 1.25017 0.95340 0.95085 0.99079 1.69955 1.39060 1.21233 1.23470 0.86697 0.78916 0.80108 0.82506 1.20258 1.21384 1.20311 1.22275 0.97394 0.97104 0.89244 1.60751 1.60407 1.04065 1.02377 1.22812 0.95791 0.90524 1.02081 1.21802 0.98507 0.97772 0.81906 1.86416 1.83157 1.37772 1.23239 1.22386 0.94739 0.83629 0.98950 1.21644 1.00569 0.96465 0.94123 0.90505 1.22559 0.98776 0.97501 0.93273 1.22974 0.97692 1.00659 0.96071 1.22838 0.99983 0.98579 0.96679 1.22946 1.00669 0.97795 0.95963 1.22314 0.99947 0.95266 0.88406 0.92814 0.94088 0.94296 0.97028 0.96644 0.93052 0.95448 0.91505 0.89667 0.94103 0.93433 0.89402 0.91743 0.89525 0.89047 0.90241 0.91566 0.90361 0.91662 0.91546 0.89894 0.95110 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.89 37.16 0.33 -2.01 16 2 C -0.08 -1.65 2.25 -90.62 -0.20 -1.85 16 3 H 0.06 1.16 6.26 -51.92 -0.32 0.84 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.36 8.41 -34.44 -0.29 -14.65 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 C 0.07 1.16 4.23 -3.83 -0.02 1.14 16 14 N -0.55 -8.14 3.38 -234.19 -0.79 -8.93 16 15 C 0.02 0.24 5.16 -4.20 -0.02 0.22 16 16 C 0.08 1.04 6.53 37.91 0.25 1.29 16 17 O -0.39 -5.13 10.04 -21.28 -0.21 -5.34 16 18 C 0.08 0.89 5.89 36.17 0.21 1.10 16 19 C -0.11 -1.16 1.48 -91.42 -0.14 -1.30 16 20 H 0.08 0.91 7.13 -51.93 -0.37 0.54 16 21 C -0.10 -0.89 2.96 -89.81 -0.27 -1.15 16 22 C -0.14 -1.14 7.59 -25.83 -0.20 -1.33 16 23 C -0.14 -1.05 8.09 -25.83 -0.21 -1.26 16 24 C -0.14 -1.06 6.41 -25.92 -0.17 -1.22 16 25 C 0.07 0.85 4.74 -3.00 -0.01 0.84 16 26 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 27 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 28 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 33 H 0.07 1.17 8.03 -51.92 -0.42 0.75 16 34 H 0.09 1.32 5.83 -51.93 -0.30 1.02 16 35 H 0.04 0.57 7.01 -51.93 -0.36 0.21 16 36 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.79 7.61 -51.93 -0.40 0.40 16 39 H 0.09 0.84 6.78 -51.93 -0.35 0.49 16 40 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 41 H 0.08 0.70 7.99 -51.93 -0.41 0.28 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 47 H 0.03 0.40 8.04 -51.93 -0.42 -0.02 16 48 H 0.07 0.87 7.92 -51.93 -0.41 0.46 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -29.40 360.30 -9.91 -39.31 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -9.10 Total: -2.77 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -0.95 Total: -18.09 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.05 Total: -35.27 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.21 Total: -5.34 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.40 -9.91 -39.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602674517.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.774 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds