Wall clock time and date at job start Tue Mar 31 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46883 * 2 1 4 4 C 1.52995 * 109.46746 * 120.00101 * 2 1 3 5 5 C 1.50704 * 109.47382 * 295.00018 * 4 2 1 6 6 H 1.07996 * 119.99337 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00135 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99630 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 119.99892 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47389 * 90.00185 * 9 7 5 11 11 H 1.48506 * 109.47194 * 209.99903 * 9 7 5 12 12 H 1.48502 * 109.47418 * 329.99912 * 9 7 5 13 13 C 1.52994 * 109.46859 * 240.00022 * 2 1 3 14 14 N 1.46903 * 109.47265 * 63.41890 * 13 2 1 15 15 C 1.47468 * 111.00132 * 203.15796 * 14 13 2 16 16 C 1.51044 * 111.51891 * 193.32243 * 15 14 13 17 17 O 1.43448 * 107.61353 * 93.94404 * 16 15 14 18 18 C 1.36612 * 117.84068 * 277.88185 * 17 16 15 19 19 C 1.54708 * 110.79267 * 61.04138 * 18 17 16 20 20 H 1.09000 * 109.53981 * 46.53333 * 19 18 17 21 21 C 1.53006 * 109.53529 * 166.69229 * 19 18 17 22 22 C 1.53773 * 113.61455 * 279.13643 * 21 19 18 23 23 C 1.53950 * 87.02066 * 220.04775 * 22 21 19 24 24 C 1.53779 * 113.61021 * 181.52689 * 21 19 18 25 25 C 1.48022 * 111.00302 * 75.90539 * 14 13 2 26 26 H 1.09003 * 109.47084 * 65.51226 * 1 2 3 27 27 H 1.08991 * 109.47342 * 185.50636 * 1 2 3 28 28 H 1.08998 * 109.47285 * 305.51117 * 1 2 3 29 29 H 1.09003 * 109.47375 * 55.00059 * 4 2 1 30 30 H 1.09002 * 109.46923 * 174.99925 * 4 2 1 31 31 H 0.97006 * 119.99592 * 180.02562 * 8 7 5 32 32 H 1.08993 * 109.47643 * 303.41319 * 13 2 1 33 33 H 1.08997 * 109.46937 * 183.41020 * 13 2 1 34 34 H 1.09007 * 109.16733 * 72.74257 * 15 14 13 35 35 H 1.08993 * 108.99696 * 313.79312 * 15 14 13 36 36 H 1.08996 * 109.84262 * 334.40054 * 16 15 14 37 37 H 1.09005 * 109.84082 * 213.48846 * 16 15 14 38 38 H 1.08999 * 109.20972 * 181.38010 * 18 17 16 39 39 H 1.09001 * 109.21427 * 300.69938 * 18 17 16 40 40 H 1.09000 * 112.84362 * 50.33435 * 21 19 18 41 41 H 1.08999 * 113.61900 * 334.56807 * 22 21 19 42 42 H 1.08999 * 113.61648 * 105.46915 * 22 21 19 43 43 H 1.08997 * 113.54069 * 270.81441 * 23 22 21 44 44 H 1.09004 * 113.74626 * 139.94147 * 23 22 21 45 45 H 1.08999 * 113.61523 * 254.52489 * 24 21 19 46 46 H 1.08998 * 113.61813 * 25.35525 * 24 21 19 47 47 H 1.08994 * 108.74907 * 323.05829 * 25 14 13 48 48 H 1.09004 * 108.75288 * 204.94072 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9741 2.3757 7 6 1.9931 -0.4018 3.7283 8 7 2.6762 -1.5188 3.8511 9 14 1.4995 0.5633 5.2495 10 1 0.1724 0.0952 5.7237 11 1 2.5092 0.3533 6.3182 12 1 1.4246 2.0085 4.9163 13 6 2.0400 -0.7212 -1.2492 14 7 1.6189 0.0173 -2.4472 15 6 1.5867 -0.8654 -3.6281 16 6 1.4751 -0.0731 -4.9092 17 8 2.8038 0.1342 -5.4085 18 6 3.5317 1.1613 -4.8781 19 6 3.7427 0.9578 -3.3590 20 1 4.0557 -0.0688 -3.1687 21 6 4.8198 1.9223 -2.8583 22 6 6.2540 1.4374 -3.1274 23 6 6.6114 1.9720 -1.7286 24 6 5.1317 1.7731 -1.3599 25 6 2.4438 1.2312 -2.6394 26 1 -0.3633 0.4260 -0.9353 27 1 -0.3633 -1.0228 0.0986 28 1 -0.3634 0.5969 0.8365 29 1 1.6053 -1.7198 1.2951 30 1 3.1263 -0.7995 1.2056 31 1 2.9234 -1.8418 4.7317 32 1 1.6276 -1.7297 -1.2804 33 1 3.1282 -0.7745 -1.2192 34 1 0.7319 -1.5373 -3.5495 35 1 2.5017 -1.4570 -3.6539 36 1 1.0008 0.8878 -4.7099 37 1 0.8884 -0.6308 -5.6393 38 1 4.5022 1.2058 -5.3722 39 1 3.0022 2.0995 -5.0442 40 1 4.6419 2.9524 -3.1669 41 1 6.3395 0.3544 -3.2158 42 1 6.7499 1.9697 -3.9391 43 1 6.9249 3.0159 -1.7285 44 1 7.2906 1.3261 -1.1722 45 1 4.7228 2.5762 -0.7467 46 1 4.9084 0.7825 -0.9639 47 1 2.6678 1.6608 -1.6630 48 1 1.8701 1.9572 -3.2156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602674522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:56 Heat of formation + Delta-G solvation = -40.815557 kcal Electronic energy + Delta-G solvation = -23805.871063 eV Core-core repulsion = 20667.692963 eV Total energy + Delta-G solvation = -3138.178099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.49156 -38.35552 -36.95858 -34.31198 -32.50371 -32.03796 -28.92925 -26.80174 -26.63547 -25.59685 -25.11991 -24.23970 -22.46991 -21.58195 -20.02494 -19.39724 -18.64006 -16.73526 -16.54596 -16.19214 -16.06259 -15.33100 -14.95850 -14.67473 -14.34763 -14.19744 -13.45654 -13.15824 -12.98001 -12.76140 -12.40587 -12.33216 -12.19510 -11.74697 -11.67935 -11.47840 -11.37432 -11.17276 -10.85871 -10.79281 -10.72021 -10.65018 -10.49015 -10.34004 -10.27221 -10.14903 -10.13545 -9.59770 -9.41755 -9.05958 -8.92965 -8.30707 -7.88727 -5.95659 -3.96406 3.33910 3.40257 3.43416 3.71725 4.10783 4.47121 4.50048 4.58620 4.71518 4.85381 4.95539 5.00731 5.12682 5.22546 5.29082 5.36990 5.40179 5.41613 5.57278 5.66322 5.72272 5.74314 5.79783 5.82917 5.87999 5.94291 5.97965 6.01004 6.07406 6.16527 6.21839 6.27931 6.33928 6.41347 6.55060 6.62574 6.75221 7.04595 7.17559 7.23655 7.34316 7.46084 7.55387 7.72174 7.88707 8.04966 8.49528 9.10042 9.66897 11.15900 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.004799 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.383392 B = 5833.313157 C = 6972.092713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 H 0.054 0.946 4 C 0.028 3.972 5 C -0.510 4.510 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.063 3.937 14 N -0.539 5.539 15 C 0.024 3.976 16 C 0.064 3.936 17 O -0.388 6.388 18 C 0.083 3.917 19 C -0.147 4.147 20 H 0.078 0.922 21 C -0.099 4.099 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.135 4.135 25 C 0.053 3.947 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.014 0.986 30 H 0.011 0.989 31 H 0.259 0.741 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.036 0.964 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.902 5.561 -17.826 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.095 4.095 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.548 4.548 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.262 5.262 15 C -0.103 4.103 16 C -0.012 4.012 17 O -0.306 6.306 18 C 0.005 3.995 19 C -0.168 4.168 20 H 0.096 0.904 21 C -0.118 4.118 22 C -0.173 4.173 23 C -0.180 4.180 24 C -0.172 4.172 25 C -0.074 4.074 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.032 0.968 30 H 0.029 0.971 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.054 0.946 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.567 5.477 -17.763 18.764 hybrid contribution 0.531 0.297 1.176 1.324 sum 3.098 5.774 -16.586 17.834 Atomic orbital electron populations 1.21569 0.95940 1.00525 0.99906 1.21171 0.95811 0.98940 0.93574 0.92764 1.19125 0.95820 0.95481 0.90549 1.21224 1.34391 1.08239 0.90958 0.92653 1.25006 0.95360 0.95095 0.99034 1.69968 1.39174 1.21287 1.23290 0.86658 0.78218 0.80461 0.83044 1.20742 1.21351 1.19934 1.22286 0.97449 0.97048 0.89659 1.62270 1.53134 1.07754 1.03085 1.22509 1.01609 0.95912 0.90308 1.22562 0.83300 1.00350 0.94973 1.86418 1.27278 1.52764 1.64177 1.21840 0.95551 0.89437 0.92664 1.22488 0.97054 1.00574 0.96662 0.90370 1.22462 0.93583 0.98911 0.96876 1.22972 0.96207 1.00926 0.97201 1.22820 0.97298 1.01025 0.96904 1.22945 0.95745 1.03030 0.95489 1.22107 0.90730 0.93107 1.01494 0.93749 0.94307 0.93151 0.96752 0.97052 0.93156 0.91769 0.95117 0.90195 0.93809 0.91697 0.88475 0.89340 0.94626 0.89410 0.90300 0.91900 0.90507 0.91523 0.91263 0.89609 0.89806 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.85 37.16 0.33 -2.06 16 2 C -0.08 -1.55 2.38 -90.62 -0.22 -1.77 16 3 H 0.05 1.13 6.71 -51.93 -0.35 0.78 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.27 8.48 -34.44 -0.29 -14.56 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.06 1.09 4.26 -3.83 -0.02 1.07 16 14 N -0.54 -7.89 3.96 -235.67 -0.93 -8.82 16 15 C 0.02 0.31 4.98 -4.50 -0.02 0.29 16 16 C 0.06 0.70 6.50 36.17 0.24 0.93 16 17 O -0.39 -4.74 9.96 -21.72 -0.22 -4.95 16 18 C 0.08 0.91 5.77 38.06 0.22 1.13 16 19 C -0.15 -1.76 1.56 -90.73 -0.14 -1.90 16 20 H 0.08 1.09 6.60 -51.93 -0.34 0.75 16 21 C -0.10 -1.09 3.05 -89.81 -0.27 -1.37 16 22 C -0.14 -1.40 7.51 -25.83 -0.19 -1.59 16 23 C -0.14 -1.58 8.09 -25.83 -0.21 -1.79 16 24 C -0.13 -1.73 6.44 -25.92 -0.17 -1.90 16 25 C 0.05 0.72 4.45 -4.22 -0.02 0.70 16 26 H 0.04 0.78 7.55 -51.93 -0.39 0.39 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 1.04 7.12 -51.93 -0.37 0.67 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.06 1.13 7.89 -51.93 -0.41 0.72 16 33 H 0.03 0.55 7.41 -51.93 -0.38 0.17 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.04 0.60 7.13 -51.93 -0.37 0.23 16 36 H 0.06 0.71 6.78 -51.93 -0.35 0.36 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 0.88 7.96 -51.93 -0.41 0.47 16 39 H 0.04 0.36 7.72 -51.93 -0.40 -0.04 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 0.86 7.99 -51.93 -0.41 0.44 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.09 1.29 8.02 -51.93 -0.42 0.88 16 47 H 0.08 1.26 5.03 -51.93 -0.26 1.00 16 48 H 0.06 0.80 6.54 -51.93 -0.34 0.46 16 LS Contribution 357.51 15.07 5.39 5.39 Total: -1.00 -29.45 357.51 -9.98 -39.43 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -8.95 Total: -0.78 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -0.99 Total: -20.72 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.20 Total: -35.12 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.22 Total: -4.95 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.45 -9.98 -39.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602674522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.383 kcal (2) G-P(sol) polarization free energy of solvation -29.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds