Wall clock time and date at job start Tue Mar 31 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09010 * 109.46973 * 2 1 4 4 C 1.52995 * 109.47419 * 240.00376 * 2 1 3 5 5 C 1.50703 * 109.47023 * 64.99734 * 4 2 1 6 6 H 1.07997 * 120.00156 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99972 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00066 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00176 * 179.72622 * 7 5 4 10 10 H 1.48502 * 109.47093 * 90.00043 * 9 7 5 11 11 H 1.48494 * 109.47169 * 209.99768 * 9 7 5 12 12 H 1.48504 * 109.47048 * 330.00100 * 9 7 5 13 13 C 1.53000 * 109.47230 * 119.99895 * 2 1 3 14 14 N 1.46900 * 109.47231 * 295.00492 * 13 2 1 15 15 C 1.47842 * 110.99895 * 285.04272 * 14 13 2 16 16 C 1.54905 * 104.79678 * 213.63784 * 15 14 13 17 17 C 1.55137 * 101.65231 * 37.07129 * 16 15 14 18 18 C 1.47443 * 110.99707 * 164.20344 * 14 13 2 19 19 H 1.09003 * 109.88612 * 242.81835 * 18 14 13 20 20 C 1.52997 * 109.89235 * 3.85016 * 18 14 13 21 21 H 1.09003 * 110.01715 * 303.74712 * 20 18 14 22 22 C 1.54265 * 110.03385 * 182.30451 * 20 18 14 23 23 C 1.54892 * 104.19421 * 217.10605 * 22 20 18 24 24 C 1.54891 * 102.74885 * 37.93989 * 23 22 20 25 25 C 1.53872 * 110.03273 * 65.13608 * 20 18 14 26 26 H 1.09004 * 110.03454 * 238.57151 * 25 20 18 27 27 O 1.42902 * 110.03240 * 359.95083 * 25 20 18 28 28 H 1.08998 * 109.47240 * 299.99994 * 1 2 3 29 29 H 1.09004 * 109.47111 * 59.99502 * 1 2 3 30 30 H 1.08996 * 109.47024 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47126 * 305.00090 * 4 2 1 32 32 H 1.09002 * 109.47318 * 184.99836 * 4 2 1 33 33 H 0.97000 * 120.00447 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.46498 * 55.00285 * 13 2 1 35 35 H 1.08993 * 109.47389 * 174.99829 * 13 2 1 36 36 H 1.09000 * 110.37503 * 332.47374 * 15 14 13 37 37 H 1.09001 * 110.37368 * 94.80747 * 15 14 13 38 38 H 1.08998 * 110.99166 * 278.97742 * 16 15 14 39 39 H 1.09000 * 111.02343 * 155.17849 * 16 15 14 40 40 H 1.09001 * 110.70609 * 205.96329 * 17 16 15 41 41 H 1.09004 * 110.85203 * 82.79759 * 17 16 15 42 42 H 1.08995 * 110.48508 * 335.78226 * 22 20 18 43 43 H 1.08997 * 110.48562 * 98.42662 * 22 20 18 44 44 H 1.09000 * 110.75509 * 279.62263 * 23 22 20 45 45 H 1.08999 * 110.91136 * 156.33230 * 23 22 20 46 46 H 1.08997 * 110.48170 * 203.37746 * 24 23 22 47 47 H 1.09006 * 110.59665 * 80.79241 * 24 23 22 48 48 H 0.96704 * 113.99848 * 179.97438 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.6414 0.0572 -2.4765 6 1 1.0807 0.9747 -2.3756 7 6 1.9924 -0.4020 -3.7283 8 7 2.6757 -1.5190 -3.8512 9 14 1.4916 0.5588 -5.2500 10 1 2.5525 1.5422 -5.5859 11 1 1.3064 -0.3773 -6.3877 12 1 0.2180 1.2754 -4.9861 13 6 2.0401 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.4899 1.2448 2.6030 16 6 2.6316 1.4312 4.1343 17 6 2.7310 -0.0385 4.6209 18 6 1.7836 -0.7877 3.6605 19 1 0.8074 -0.9198 4.1270 20 6 2.3778 -2.1511 3.3016 21 1 1.7645 -2.6373 2.5429 22 6 2.4640 -3.0380 4.5609 23 6 3.7874 -3.8229 4.3827 24 6 4.7279 -2.7680 3.7489 25 6 3.8171 -1.9795 2.7854 26 1 3.9026 -2.3832 1.7765 27 8 4.1776 -0.5967 2.7910 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6055 -1.7197 -1.2952 32 1 3.1264 -0.7993 -1.2056 33 1 2.9230 -1.8419 -4.7318 34 1 1.6054 -1.7198 1.2951 35 1 3.1263 -0.7995 1.2056 36 1 3.4679 1.0896 2.1474 37 1 1.9967 2.1098 2.1595 38 1 1.7521 1.9219 4.5510 39 1 3.5378 1.9855 4.3785 40 1 2.3853 -0.1277 5.6508 41 1 3.7509 -0.4110 4.5246 42 1 2.5039 -2.4220 5.4592 43 1 1.6171 -3.7228 4.6039 44 1 3.6470 -4.6691 3.7101 45 1 4.1743 -4.1568 5.3454 46 1 5.5330 -3.2558 3.1996 47 1 5.1352 -2.1079 4.5149 48 1 5.0753 -0.4230 2.4762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602675307.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:35 Heat of formation + Delta-G solvation = -39.250792 kcal Electronic energy + Delta-G solvation = -24482.012231 eV Core-core repulsion = 21343.901985 eV Total energy + Delta-G solvation = -3138.110246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77219 -37.02145 -35.20652 -34.98895 -32.39293 -30.86253 -30.01799 -27.70572 -26.68518 -26.14707 -25.06208 -22.77553 -21.51262 -20.97048 -20.54627 -18.99244 -18.27950 -17.70861 -16.28165 -15.66238 -15.42880 -14.90929 -14.81176 -14.55638 -14.30421 -13.65224 -13.37577 -12.88336 -12.76393 -12.50282 -12.29964 -12.07830 -11.82331 -11.49895 -11.22354 -11.19694 -11.17787 -10.96260 -10.88925 -10.81608 -10.73275 -10.61670 -10.43302 -10.29634 -10.11090 -9.94642 -9.93638 -9.46602 -9.37095 -8.98692 -8.82709 -8.26915 -7.52855 -5.92416 -3.92425 3.36121 3.42256 3.46475 4.16022 4.41042 4.52278 4.52745 4.69522 4.85481 5.07252 5.13969 5.28914 5.31540 5.42986 5.43622 5.48459 5.53107 5.55909 5.69197 5.76799 5.87922 5.90470 5.95984 6.00991 6.07213 6.13292 6.17337 6.22702 6.30274 6.33964 6.43129 6.49516 6.53885 6.62182 6.77679 6.82499 6.91818 7.20865 7.30927 7.37031 7.66284 7.67549 7.76246 7.83472 7.96905 8.09585 8.55745 9.14317 9.70582 11.19196 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022560 B = 0.004670 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.838232 B = 5994.402099 C = 6555.323157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 H 0.050 0.950 4 C 0.029 3.971 5 C -0.508 4.508 6 H 0.055 0.945 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.040 3.960 14 N -0.513 5.513 15 C 0.058 3.942 16 C -0.121 4.121 17 C -0.135 4.135 18 C 0.094 3.906 19 H 0.068 0.932 20 C -0.106 4.106 21 H 0.088 0.912 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.156 4.156 25 C 0.097 3.903 26 H 0.064 0.936 27 O -0.536 6.536 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.034 0.966 31 H 0.012 0.988 32 H 0.009 0.991 33 H 0.258 0.742 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.044 0.956 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 -1.546 19.118 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.098 4.098 3 H 0.069 0.931 4 C -0.008 4.008 5 C -0.546 4.546 6 H 0.073 0.927 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.087 4.087 14 N -0.236 5.236 15 C -0.070 4.070 16 C -0.159 4.159 17 C -0.172 4.172 18 C -0.015 4.015 19 H 0.086 0.914 20 C -0.125 4.125 21 H 0.107 0.893 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.194 4.194 25 C 0.039 3.961 26 H 0.082 0.918 27 O -0.343 6.343 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.027 0.973 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.120 0.880 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.588 -1.454 19.132 19.361 hybrid contribution 1.118 0.027 -1.153 1.606 sum 3.706 -1.427 17.979 18.412 Atomic orbital electron populations 1.21571 0.96364 1.00046 0.99909 1.21168 0.95469 0.99020 0.94153 0.93115 1.19096 0.95595 0.95381 0.90730 1.21275 1.34162 1.08132 0.91057 0.92676 1.25011 0.95461 0.95085 0.99009 1.69967 1.39490 1.21283 1.23212 0.86660 0.78974 0.79804 0.82966 1.20815 1.21364 1.19894 1.22944 0.99502 0.96567 0.89662 1.63751 1.52157 1.06037 1.01619 1.22924 0.96507 0.92892 0.94653 1.22520 1.00257 0.96515 0.96640 1.23129 1.02138 0.95329 0.96652 1.22171 0.96921 0.90653 0.91741 0.91429 1.22504 0.94906 0.97353 0.97707 0.89346 1.22413 0.97400 0.97896 0.97925 1.22389 0.95499 0.97646 1.00464 1.23129 0.98359 0.98451 0.99466 1.22468 0.93904 0.82060 0.97660 0.91778 1.87126 1.35595 1.23962 1.87575 0.93995 0.93193 0.94643 0.96967 0.97256 0.93237 0.92162 0.92422 0.91786 0.92276 0.92471 0.92155 0.93723 0.88008 0.91263 0.91632 0.91422 0.91718 0.91711 0.90913 0.78842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 8.89 37.16 0.33 -2.20 16 2 C -0.08 -1.70 2.39 -90.62 -0.22 -1.91 16 3 H 0.05 1.13 7.59 -51.92 -0.39 0.74 16 4 C 0.03 0.77 4.45 -27.88 -0.12 0.65 16 5 C -0.51 -14.54 8.41 -34.44 -0.29 -14.83 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 9 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.04 0.72 2.66 -3.82 -0.01 0.71 16 14 N -0.51 -8.12 4.54 -223.36 -1.01 -9.13 16 15 C 0.06 0.86 5.29 -2.30 -0.01 0.85 16 16 C -0.12 -1.51 6.97 -24.60 -0.17 -1.68 16 17 C -0.13 -1.59 4.73 -24.91 -0.12 -1.71 16 18 C 0.09 1.26 3.17 -66.73 -0.21 1.05 16 19 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 20 C -0.11 -1.29 2.17 -89.51 -0.19 -1.48 16 21 H 0.09 1.24 6.02 -51.93 -0.31 0.92 16 22 C -0.12 -1.18 6.21 -25.07 -0.16 -1.33 16 23 C -0.12 -1.11 6.91 -24.74 -0.17 -1.28 16 24 C -0.16 -1.47 6.34 -25.07 -0.16 -1.63 16 25 C 0.10 1.12 2.41 -25.62 -0.06 1.06 16 26 H 0.06 0.86 7.31 -51.93 -0.38 0.48 16 27 O -0.54 -6.08 3.64 -35.23 -0.13 -6.20 16 28 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 29 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.06 1.10 5.57 -51.93 -0.29 0.81 16 35 H 0.06 1.01 4.01 -51.93 -0.21 0.80 16 36 H 0.06 0.97 5.61 -51.93 -0.29 0.68 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.04 0.49 8.05 -51.93 -0.42 0.08 16 41 H 0.10 1.17 4.35 -51.00 -0.22 0.95 16 42 H 0.07 0.67 6.95 -51.93 -0.36 0.31 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.66 7.53 -51.93 -0.39 0.27 16 48 H 0.36 3.16 9.11 46.56 0.42 3.59 16 LS Contribution 340.50 15.07 5.13 5.13 Total: -1.00 -30.43 340.50 -9.72 -40.15 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.76 Total: 1.86 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -1.66 Total: -22.27 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: -0.28 Total: -35.72 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.13 Total: -6.20 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.43 -9.72 -40.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602675307.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.899 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds