Wall clock time and date at job start Tue Mar 31 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09010 * 109.46973 * 2 1 4 4 C 1.52995 * 109.47419 * 240.00376 * 2 1 3 5 5 C 1.50703 * 109.47023 * 64.99734 * 4 2 1 6 6 H 1.07997 * 120.00156 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99972 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00066 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00176 * 179.72622 * 7 5 4 10 10 H 1.48502 * 109.47093 * 90.00043 * 9 7 5 11 11 H 1.48494 * 109.47169 * 209.99768 * 9 7 5 12 12 H 1.48504 * 109.47048 * 330.00100 * 9 7 5 13 13 C 1.53000 * 109.47230 * 119.99895 * 2 1 3 14 14 N 1.46900 * 109.47231 * 295.00492 * 13 2 1 15 15 C 1.47842 * 110.99895 * 285.04272 * 14 13 2 16 16 C 1.54905 * 104.79678 * 213.63784 * 15 14 13 17 17 C 1.55137 * 101.65231 * 37.07129 * 16 15 14 18 18 C 1.47443 * 110.99707 * 164.20344 * 14 13 2 19 19 H 1.09003 * 109.88612 * 242.81835 * 18 14 13 20 20 C 1.52997 * 109.89235 * 3.85016 * 18 14 13 21 21 H 1.09003 * 110.01715 * 303.74712 * 20 18 14 22 22 C 1.54265 * 110.03385 * 182.30451 * 20 18 14 23 23 C 1.54892 * 104.19421 * 217.10605 * 22 20 18 24 24 C 1.54891 * 102.74885 * 37.93989 * 23 22 20 25 25 C 1.53872 * 110.03273 * 65.13608 * 20 18 14 26 26 H 1.09004 * 110.03454 * 238.57151 * 25 20 18 27 27 O 1.42902 * 110.03240 * 359.95083 * 25 20 18 28 28 H 1.08998 * 109.47240 * 299.99994 * 1 2 3 29 29 H 1.09004 * 109.47111 * 59.99502 * 1 2 3 30 30 H 1.08996 * 109.47024 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47126 * 305.00090 * 4 2 1 32 32 H 1.09002 * 109.47318 * 184.99836 * 4 2 1 33 33 H 0.97000 * 120.00447 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.46498 * 55.00285 * 13 2 1 35 35 H 1.08993 * 109.47389 * 174.99829 * 13 2 1 36 36 H 1.09000 * 110.37503 * 332.47374 * 15 14 13 37 37 H 1.09001 * 110.37368 * 94.80747 * 15 14 13 38 38 H 1.08998 * 110.99166 * 278.97742 * 16 15 14 39 39 H 1.09000 * 111.02343 * 155.17849 * 16 15 14 40 40 H 1.09001 * 110.70609 * 205.96329 * 17 16 15 41 41 H 1.09004 * 110.85203 * 82.79759 * 17 16 15 42 42 H 1.08995 * 110.48508 * 335.78226 * 22 20 18 43 43 H 1.08997 * 110.48562 * 98.42662 * 22 20 18 44 44 H 1.09000 * 110.75509 * 279.62263 * 23 22 20 45 45 H 1.08999 * 110.91136 * 156.33230 * 23 22 20 46 46 H 1.08997 * 110.48170 * 203.37746 * 24 23 22 47 47 H 1.09006 * 110.59665 * 80.79241 * 24 23 22 48 48 H 0.96704 * 113.99848 * 179.97438 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.6414 0.0572 -2.4765 6 1 1.0807 0.9747 -2.3756 7 6 1.9924 -0.4020 -3.7283 8 7 2.6757 -1.5190 -3.8512 9 14 1.4916 0.5588 -5.2500 10 1 2.5525 1.5422 -5.5859 11 1 1.3064 -0.3773 -6.3877 12 1 0.2180 1.2754 -4.9861 13 6 2.0401 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.4899 1.2448 2.6030 16 6 2.6316 1.4312 4.1343 17 6 2.7310 -0.0385 4.6209 18 6 1.7836 -0.7877 3.6605 19 1 0.8074 -0.9198 4.1270 20 6 2.3778 -2.1511 3.3016 21 1 1.7645 -2.6373 2.5429 22 6 2.4640 -3.0380 4.5609 23 6 3.7874 -3.8229 4.3827 24 6 4.7279 -2.7680 3.7489 25 6 3.8171 -1.9795 2.7854 26 1 3.9026 -2.3832 1.7765 27 8 4.1776 -0.5967 2.7910 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6055 -1.7197 -1.2952 32 1 3.1264 -0.7993 -1.2056 33 1 2.9230 -1.8419 -4.7318 34 1 1.6054 -1.7198 1.2951 35 1 3.1263 -0.7995 1.2056 36 1 3.4679 1.0896 2.1474 37 1 1.9967 2.1098 2.1595 38 1 1.7521 1.9219 4.5510 39 1 3.5378 1.9855 4.3785 40 1 2.3853 -0.1277 5.6508 41 1 3.7509 -0.4110 4.5246 42 1 2.5039 -2.4220 5.4592 43 1 1.6171 -3.7228 4.6039 44 1 3.6470 -4.6691 3.7101 45 1 4.1743 -4.1568 5.3454 46 1 5.5330 -3.2558 3.1996 47 1 5.1352 -2.1079 4.5149 48 1 5.0753 -0.4230 2.4762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602675307.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:34 Heat of formation + Delta-G solvation = -57.611780 kcal Electronic energy + Delta-G solvation = -24482.808423 eV Core-core repulsion = 21343.901985 eV Total energy + Delta-G solvation = -3138.906438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.82040 -38.16061 -36.74189 -36.02577 -34.42308 -32.11252 -31.20446 -28.75626 -28.52757 -27.20257 -26.60671 -24.65871 -22.51735 -22.07259 -21.52567 -20.44542 -19.56385 -18.63044 -18.44279 -16.89414 -16.47569 -16.38378 -16.14875 -15.91166 -15.39054 -14.78947 -14.67498 -14.38575 -14.32530 -13.98012 -13.55345 -13.23620 -13.19785 -13.07398 -12.78637 -12.69237 -12.42638 -12.29810 -12.13906 -12.07369 -11.94965 -11.87504 -11.71018 -11.63279 -11.59984 -11.36189 -11.10385 -10.94308 -10.84324 -10.77793 -10.52318 -10.39602 -8.79584 -8.17161 -6.25863 1.38816 1.39981 1.51201 2.41959 3.15789 3.21548 3.41097 3.66424 3.73121 3.85795 4.06753 4.18420 4.29064 4.32721 4.43530 4.50456 4.54261 4.57995 4.60863 4.69392 4.74942 4.79856 4.91841 4.97333 5.01751 5.05255 5.09175 5.13984 5.15878 5.20382 5.23584 5.29952 5.31603 5.35290 5.37583 5.43283 5.49405 5.50612 5.53892 5.61298 5.81245 5.84624 5.91471 6.29559 6.45899 6.50715 6.88509 6.89625 7.42080 8.94753 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022560 B = 0.004670 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.838232 B = 5994.402099 C = 6555.323157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.071 4.071 3 H 0.041 0.959 4 C 0.040 3.960 5 C -0.528 4.528 6 H 0.055 0.945 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.059 3.941 14 N -0.524 5.524 15 C 0.054 3.946 16 C -0.113 4.113 17 C -0.125 4.125 18 C 0.092 3.908 19 H 0.064 0.936 20 C -0.107 4.107 21 H 0.063 0.937 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.146 4.146 25 C 0.100 3.900 26 H 0.035 0.965 27 O -0.544 6.544 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.031 0.969 31 H -0.015 1.015 32 H -0.015 1.015 33 H 0.262 0.738 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.977 -0.911 20.686 21.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 H 0.060 0.940 4 C 0.002 3.998 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.190 1.190 13 C -0.069 4.069 14 N -0.247 5.247 15 C -0.073 4.073 16 C -0.151 4.151 17 C -0.162 4.162 18 C -0.016 4.016 19 H 0.082 0.918 20 C -0.126 4.126 21 H 0.081 0.919 22 C -0.150 4.150 23 C -0.158 4.158 24 C -0.184 4.184 25 C 0.041 3.959 26 H 0.054 0.946 27 O -0.352 6.352 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.003 0.997 32 H 0.004 0.996 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.127 0.873 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.102 0.898 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.904 -0.811 20.715 20.933 hybrid contribution 1.015 -0.179 -1.650 1.946 sum 3.919 -0.990 19.065 19.489 Atomic orbital electron populations 1.21455 0.95674 0.99809 0.99884 1.21009 0.95912 0.98136 0.93962 0.94017 1.18944 0.93863 0.94292 0.92685 1.21628 1.34316 1.08400 0.92265 0.92648 1.25912 0.95272 0.96068 1.02462 1.70096 1.40401 1.22831 1.24217 0.85542 0.78992 0.78457 0.78655 1.19763 1.20737 1.19033 1.22631 0.99306 0.95753 0.89184 1.63630 1.52659 1.06588 1.01792 1.22931 0.95893 0.91796 0.96686 1.22473 1.01062 0.97203 0.94356 1.23075 1.02023 0.94361 0.96776 1.22217 0.97436 0.91074 0.90921 0.91835 1.22445 0.94796 0.97046 0.98334 0.91894 1.22375 0.98145 0.97675 0.96790 1.22401 0.94850 0.97223 1.01295 1.23042 0.97945 0.98326 0.99070 1.22356 0.94266 0.82410 0.96841 0.94647 1.87053 1.36784 1.23792 1.87550 0.92193 0.94841 0.94945 0.99674 0.99631 0.92953 0.92929 0.92281 0.92106 0.93823 0.92448 0.90544 0.92205 0.87318 0.90248 0.91308 0.91929 0.89803 0.91338 0.89682 0.77452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.70 8.89 71.98 0.64 -4.06 16 2 C -0.07 -3.15 2.39 -10.79 -0.03 -3.18 16 3 H 0.04 1.91 7.59 -2.38 -0.02 1.89 16 4 C 0.04 2.17 4.45 29.85 0.13 2.30 16 5 C -0.53 -30.95 8.41 25.60 0.22 -30.73 16 6 H 0.06 3.18 7.06 -2.91 -0.02 3.16 16 7 C 0.00 0.00 5.46 84.65 0.46 0.46 16 8 N -0.93 -57.92 13.29 21.45 0.28 -57.63 16 9 Si 0.96 45.52 29.54 68.60 2.03 47.54 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.06 2.15 2.66 86.30 0.23 2.38 16 14 N -0.52 -16.44 4.54 -860.57 -3.91 -20.35 16 15 C 0.05 1.58 5.29 86.77 0.46 2.04 16 16 C -0.11 -2.55 6.97 31.98 0.22 -2.33 16 17 C -0.12 -2.62 4.73 31.77 0.15 -2.47 16 18 C 0.09 2.36 3.17 45.26 0.14 2.50 16 19 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 20 C -0.11 -2.56 2.17 -10.07 -0.02 -2.58 16 21 H 0.06 1.82 6.02 -2.39 -0.01 1.81 16 22 C -0.11 -2.02 6.21 31.67 0.20 -1.82 16 23 C -0.12 -1.93 6.91 31.89 0.22 -1.71 16 24 C -0.15 -2.46 6.34 31.67 0.20 -2.26 16 25 C 0.10 2.26 2.41 31.32 0.08 2.34 16 26 H 0.04 1.00 7.31 -2.39 -0.02 0.98 16 27 O -0.54 -11.80 3.64 -148.98 -0.54 -12.34 16 28 H 0.06 2.30 7.75 -2.39 -0.02 2.28 16 29 H 0.03 1.49 6.95 -2.39 -0.02 1.47 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 31 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 32 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 33 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.05 2.00 5.57 -2.39 -0.01 1.99 16 35 H 0.06 2.15 4.01 -2.39 -0.01 2.14 16 36 H 0.06 1.81 5.61 -2.39 -0.01 1.79 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.11 8.05 -2.39 -0.02 1.09 16 41 H 0.11 2.18 4.35 -1.80 -0.01 2.17 16 42 H 0.08 1.30 6.95 -2.39 -0.02 1.28 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.08 1.27 7.53 -2.38 -0.02 1.25 16 48 H 0.38 6.16 9.11 -72.42 -0.66 5.50 16 Total: -1.00 -65.92 340.50 1.43 -64.48 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.27 Total: 17.43 kcal Atomic # 6 Polarization: -42.43 SS G_CDS: 3.30 Total: -39.13 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -3.62 Total: -77.98 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.54 Total: -12.34 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -65.92 1.43 -64.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602675307.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.870 kcal (2) G-P(sol) polarization free energy of solvation -65.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds